Wall clock time and date at job start Sun Mar 29 2020 22:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47370 * 2 1 4 4 C 1.52998 * 109.47104 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47397 * 180.02562 * 4 3 2 6 6 C 1.42896 * 114.00426 * 179.97438 * 5 4 3 7 7 H 1.09006 * 112.84909 * 338.30995 * 6 5 4 8 8 C 1.53788 * 113.61613 * 109.50234 * 6 5 4 9 9 C 1.53780 * 87.07925 * 89.20000 * 8 6 5 10 10 H 1.09004 * 113.60812 * 140.06808 * 9 8 6 11 11 N 1.46496 * 113.61522 * 270.88328 * 9 8 6 12 12 C 1.36939 * 120.00077 * 255.49681 * 11 9 8 13 13 H 1.07997 * 119.99728 * 359.72656 * 12 11 9 14 14 C 1.38815 * 119.99845 * 180.02562 * 12 11 9 15 15 N 1.31619 * 119.99884 * 359.72042 * 14 12 11 16 16 Si 1.86798 * 119.99660 * 179.72678 * 14 12 11 17 17 H 1.48498 * 109.47416 * 59.99578 * 16 14 12 18 18 H 1.48508 * 109.46609 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46903 * 299.99163 * 16 14 12 20 20 C 1.53780 * 87.08217 * 25.43640 * 9 8 6 21 21 C 1.52994 * 113.61824 * 89.11103 * 20 9 8 22 22 C 1.53001 * 113.61352 * 220.01683 * 20 9 8 23 23 H 1.08997 * 109.47817 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46856 * 300.00389 * 1 2 3 25 25 H 1.09003 * 109.47272 * 59.99717 * 1 2 3 26 26 H 1.09003 * 109.46417 * 239.99854 * 2 1 3 27 27 H 1.08996 * 109.46889 * 120.00142 * 2 1 3 28 28 H 1.08998 * 109.47197 * 59.99819 * 3 2 1 29 29 H 1.08996 * 109.47231 * 299.99933 * 3 2 1 30 30 H 1.08998 * 109.47462 * 59.99710 * 4 3 2 31 31 H 1.09003 * 109.47184 * 300.00066 * 4 3 2 32 32 H 1.09002 * 113.60922 * 334.65341 * 8 6 5 33 33 H 1.08993 * 113.61730 * 203.75378 * 8 6 5 34 34 H 0.97004 * 120.00009 * 75.50299 * 11 9 8 35 35 H 0.97000 * 119.99517 * 180.02562 * 15 14 12 36 36 H 1.08999 * 109.46948 * 60.00024 * 21 20 9 37 37 H 1.09001 * 109.47269 * 179.97438 * 21 20 9 38 38 H 1.09001 * 109.47486 * 300.00129 * 21 20 9 39 39 H 1.09002 * 109.47153 * 60.00081 * 22 20 9 40 40 H 1.08998 * 109.47161 * 179.97438 * 22 20 9 41 41 H 1.08993 * 109.47312 * 299.99940 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 8 4.0465 2.7896 0.0000 6 6 5.4710 2.9024 0.0000 7 1 5.9666 2.0051 0.3709 8 6 6.0480 3.4205 -1.3280 9 6 5.8845 4.8383 -0.7551 10 1 6.7133 5.5043 -0.9951 11 7 4.5759 5.4358 -1.0320 12 6 4.4546 6.4031 -1.9937 13 1 5.3244 6.7286 -2.5449 14 6 3.2147 6.9697 -2.2556 15 7 2.1548 6.5732 -1.5835 16 14 3.0506 8.2946 -3.5621 17 1 3.4814 7.7511 -4.8752 18 1 1.6339 8.7317 -3.6485 19 1 3.9057 9.4539 -3.2016 20 6 5.9880 4.2012 0.6407 21 6 7.4225 4.0983 1.1627 22 6 5.0241 4.8061 1.6634 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6768 1.9563 -0.8900 30 1 3.9330 0.9286 -0.8908 31 1 3.9337 0.9283 0.8891 32 1 5.4096 3.2211 -2.1887 33 1 7.0863 3.1338 -1.4944 34 1 3.7954 5.1463 -0.5340 35 1 1.2883 6.9689 -1.7668 36 1 7.8581 5.0954 1.2271 37 1 7.4173 3.6399 2.1516 38 1 8.0141 3.4868 0.4814 39 1 3.9984 4.6716 1.3198 40 1 5.1534 4.3072 2.6239 41 1 5.2334 5.8699 1.7751 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336765655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:52 Heat of formation + Delta-G solvation = -32.290029 kcal Electronic energy + Delta-G solvation = -18366.676591 eV Core-core repulsion = 15668.169564 eV Total energy + Delta-G solvation = -2698.507026 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.61372 -36.56230 -34.38907 -33.24871 -30.40635 -29.45272 -28.71970 -26.68656 -24.32553 -23.23148 -22.29270 -21.45419 -20.90042 -17.70683 -17.10414 -15.92166 -15.66410 -14.74423 -14.66716 -14.34853 -13.81349 -13.60693 -13.46952 -12.81045 -12.73050 -12.29410 -12.09966 -11.84089 -11.75915 -11.60323 -11.25030 -10.99539 -10.95268 -10.81307 -10.74592 -10.72337 -10.44170 -10.23206 -10.09462 -9.84990 -9.51757 -9.14305 -8.73273 -8.70707 -6.79030 -5.64395 -2.91390 3.49976 3.54021 3.55162 3.98577 4.67231 5.01673 5.05437 5.19991 5.21855 5.25115 5.46499 5.49372 5.57431 5.66114 5.70622 5.74047 5.80560 5.89888 5.95845 5.98353 5.99764 6.10384 6.18490 6.20433 6.24602 6.33828 6.43517 6.44756 6.50842 6.57603 6.66582 6.80556 6.99669 7.15976 7.24029 7.80119 7.90654 8.55552 9.66553 10.30043 10.67369 11.57612 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.008091 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.040833 B = 3459.971295 C = 4821.558293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.120 4.120 4 C 0.066 3.934 5 O -0.345 6.345 6 C 0.080 3.920 7 H 0.053 0.947 8 C -0.200 4.200 9 C 0.184 3.816 10 H 0.056 0.944 11 N -0.697 5.697 12 C -0.239 4.239 13 H 0.068 0.932 14 C -0.013 4.013 15 N -0.928 5.928 16 Si 0.904 3.096 17 H -0.288 1.288 18 H -0.292 1.292 19 H -0.287 1.287 20 C -0.108 4.108 21 C -0.119 4.119 22 C -0.121 4.121 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.395 0.605 35 H 0.254 0.746 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.035 0.965 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.184 -11.982 5.615 13.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.157 4.157 4 C -0.011 4.011 5 O -0.263 6.263 6 C 0.021 3.979 7 H 0.071 0.929 8 C -0.242 4.242 9 C 0.071 3.929 10 H 0.074 0.926 11 N -0.336 5.336 12 C -0.370 4.370 13 H 0.086 0.914 14 C -0.209 4.209 15 N -0.576 5.576 16 Si 0.736 3.264 17 H -0.214 1.214 18 H -0.218 1.218 19 H -0.214 1.214 20 C -0.110 4.110 21 C -0.177 4.177 22 C -0.178 4.178 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.232 0.768 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.013 -11.654 5.479 13.488 hybrid contribution -0.194 0.282 -0.673 0.755 sum 3.819 -11.372 4.806 12.923 Atomic orbital electron populations 1.21751 0.95635 1.01187 1.02286 1.21424 0.96093 0.96557 1.01614 1.21526 0.93757 0.96448 1.04010 1.22436 0.94981 0.84789 0.98879 1.88006 1.19456 1.24475 1.94345 1.22980 0.81540 0.96085 0.97251 0.92875 1.24353 0.99194 1.02772 0.97859 1.21057 0.90231 0.90958 0.90677 0.92594 1.42209 1.04025 1.43750 1.43659 1.19239 0.93661 1.12228 1.11870 0.91449 1.24716 0.95723 1.00391 1.00056 1.69685 0.98755 1.45515 1.43653 0.86311 0.76509 0.81934 0.81674 1.21446 1.21799 1.21385 1.22630 0.94875 0.95951 0.97542 1.21486 0.94514 1.01721 0.99946 1.21401 1.00631 0.99712 0.96048 0.93035 0.92627 0.92436 0.92164 0.92316 0.91166 0.90564 0.94154 0.94423 0.90985 0.91107 0.76832 0.93656 0.92132 0.93075 0.92822 0.90803 0.94610 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 37.16 0.37 -1.26 16 2 C -0.12 -1.37 5.93 -26.73 -0.16 -1.53 16 3 C -0.12 -1.77 5.58 -26.73 -0.15 -1.92 16 4 C 0.07 1.03 5.79 37.16 0.22 1.24 16 5 O -0.34 -6.69 7.64 -35.23 -0.27 -6.96 16 6 C 0.08 1.41 3.77 -25.91 -0.10 1.31 16 7 H 0.05 0.81 7.85 -51.93 -0.41 0.41 16 8 C -0.20 -3.77 7.36 -25.92 -0.19 -3.96 16 9 C 0.18 3.91 4.00 -67.12 -0.27 3.64 16 10 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 11 N -0.70 -18.29 4.73 -52.64 -0.25 -18.54 16 12 C -0.24 -6.85 9.98 -15.06 -0.15 -7.00 16 13 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 14 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 15 N -0.93 -28.70 13.06 55.49 0.72 -27.98 16 16 Si 0.90 22.93 29.55 -169.99 -5.02 17.91 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 20 C -0.11 -1.92 1.34 -153.70 -0.21 -2.12 16 21 C -0.12 -1.67 9.07 37.15 0.34 -1.33 16 22 C -0.12 -2.26 8.43 37.16 0.31 -1.95 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.07 1.13 7.65 -51.93 -0.40 0.73 16 34 H 0.39 11.05 5.27 -40.82 -0.22 10.84 16 35 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.68 7.34 -51.93 -0.38 0.30 16 39 H 0.07 1.60 5.64 -51.93 -0.29 1.30 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 324.92 15.07 4.90 4.90 Total: -1.00 -30.84 324.92 -7.58 -38.42 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -7.58 Total: 7.62 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -0.08 Total: -15.36 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.48 Total: -46.52 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.27 Total: -6.96 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.84 -7.58 -38.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336765655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.127 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds