Wall clock time and date at job start Sun Mar 29 2020 22:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47370 * 2 1 4 4 C 1.52998 * 109.47104 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47397 * 180.02562 * 4 3 2 6 6 C 1.42896 * 114.00426 * 179.97438 * 5 4 3 7 7 H 1.09006 * 112.84909 * 338.30995 * 6 5 4 8 8 C 1.53788 * 113.61613 * 109.50234 * 6 5 4 9 9 C 1.53780 * 87.07925 * 89.20000 * 8 6 5 10 10 H 1.09004 * 113.60812 * 140.06808 * 9 8 6 11 11 N 1.46496 * 113.61522 * 270.88328 * 9 8 6 12 12 C 1.36939 * 120.00077 * 255.49681 * 11 9 8 13 13 H 1.07997 * 119.99728 * 359.72656 * 12 11 9 14 14 C 1.38815 * 119.99845 * 180.02562 * 12 11 9 15 15 N 1.31619 * 119.99884 * 359.72042 * 14 12 11 16 16 Si 1.86798 * 119.99660 * 179.72678 * 14 12 11 17 17 H 1.48498 * 109.47416 * 59.99578 * 16 14 12 18 18 H 1.48508 * 109.46609 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46903 * 299.99163 * 16 14 12 20 20 C 1.53780 * 87.08217 * 25.43640 * 9 8 6 21 21 C 1.52994 * 113.61824 * 89.11103 * 20 9 8 22 22 C 1.53001 * 113.61352 * 220.01683 * 20 9 8 23 23 H 1.08997 * 109.47817 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46856 * 300.00389 * 1 2 3 25 25 H 1.09003 * 109.47272 * 59.99717 * 1 2 3 26 26 H 1.09003 * 109.46417 * 239.99854 * 2 1 3 27 27 H 1.08996 * 109.46889 * 120.00142 * 2 1 3 28 28 H 1.08998 * 109.47197 * 59.99819 * 3 2 1 29 29 H 1.08996 * 109.47231 * 299.99933 * 3 2 1 30 30 H 1.08998 * 109.47462 * 59.99710 * 4 3 2 31 31 H 1.09003 * 109.47184 * 300.00066 * 4 3 2 32 32 H 1.09002 * 113.60922 * 334.65341 * 8 6 5 33 33 H 1.08993 * 113.61730 * 203.75378 * 8 6 5 34 34 H 0.97004 * 120.00009 * 75.50299 * 11 9 8 35 35 H 0.97000 * 119.99517 * 180.02562 * 15 14 12 36 36 H 1.08999 * 109.46948 * 60.00024 * 21 20 9 37 37 H 1.09001 * 109.47269 * 179.97438 * 21 20 9 38 38 H 1.09001 * 109.47486 * 300.00129 * 21 20 9 39 39 H 1.09002 * 109.47153 * 60.00081 * 22 20 9 40 40 H 1.08998 * 109.47161 * 179.97438 * 22 20 9 41 41 H 1.08993 * 109.47312 * 299.99940 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 8 4.0465 2.7896 0.0000 6 6 5.4710 2.9024 0.0000 7 1 5.9666 2.0051 0.3709 8 6 6.0480 3.4205 -1.3280 9 6 5.8845 4.8383 -0.7551 10 1 6.7133 5.5043 -0.9951 11 7 4.5759 5.4358 -1.0320 12 6 4.4546 6.4031 -1.9937 13 1 5.3244 6.7286 -2.5449 14 6 3.2147 6.9697 -2.2556 15 7 2.1548 6.5732 -1.5835 16 14 3.0506 8.2946 -3.5621 17 1 3.4814 7.7511 -4.8752 18 1 1.6339 8.7317 -3.6485 19 1 3.9057 9.4539 -3.2016 20 6 5.9880 4.2012 0.6407 21 6 7.4225 4.0983 1.1627 22 6 5.0241 4.8061 1.6634 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6768 1.9563 -0.8900 30 1 3.9330 0.9286 -0.8908 31 1 3.9337 0.9283 0.8891 32 1 5.4096 3.2211 -2.1887 33 1 7.0863 3.1338 -1.4944 34 1 3.7954 5.1463 -0.5340 35 1 1.2883 6.9689 -1.7668 36 1 7.8581 5.0954 1.2271 37 1 7.4173 3.6399 2.1516 38 1 8.0141 3.4868 0.4814 39 1 3.9984 4.6716 1.3198 40 1 5.1534 4.3072 2.6239 41 1 5.2334 5.8699 1.7751 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336765655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:52 Heat of formation + Delta-G solvation = -50.479042 kcal Electronic energy + Delta-G solvation = -18367.465325 eV Core-core repulsion = 15668.169564 eV Total energy + Delta-G solvation = -2699.295761 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.08941 -37.89308 -35.66140 -35.15575 -32.26611 -31.03223 -29.91381 -28.01801 -26.23340 -24.52048 -23.85048 -22.97383 -21.98756 -19.45539 -18.92757 -17.34464 -16.88156 -16.60255 -16.16189 -15.67776 -15.51002 -15.14113 -14.60641 -14.32877 -14.08006 -13.86556 -13.39822 -13.07514 -13.04012 -12.91035 -12.79303 -12.77461 -12.59745 -12.21434 -12.19369 -12.07586 -11.95643 -11.76642 -11.58615 -11.38102 -11.34760 -10.76770 -10.60517 -10.11792 -8.88360 -7.88296 -5.14990 1.45230 1.49061 1.54978 2.56979 2.74063 3.40837 3.63911 3.82845 3.95782 4.02104 4.19123 4.24790 4.27319 4.37440 4.43169 4.46334 4.49045 4.59755 4.74595 4.84709 4.88366 4.92659 4.94189 4.96029 5.03526 5.06070 5.15347 5.19739 5.25209 5.30555 5.35439 5.39583 5.45419 5.53062 5.66376 5.73180 6.33999 6.60836 7.40067 8.24895 8.48878 9.34701 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.008091 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.040833 B = 3459.971295 C = 4821.558293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.118 4.118 4 C 0.062 3.938 5 O -0.381 6.381 6 C 0.082 3.918 7 H 0.090 0.910 8 C -0.189 4.189 9 C 0.155 3.845 10 H 0.053 0.947 11 N -0.713 5.713 12 C -0.242 4.242 13 H 0.072 0.928 14 C -0.077 4.077 15 N -0.966 5.966 16 Si 0.972 3.028 17 H -0.280 1.280 18 H -0.296 1.296 19 H -0.277 1.277 20 C -0.097 4.097 21 C -0.113 4.113 22 C -0.115 4.115 23 H 0.072 0.928 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.107 0.893 34 H 0.383 0.617 35 H 0.248 0.752 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.036 0.964 40 H 0.064 0.936 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.105 -13.556 6.243 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.155 4.155 4 C -0.014 4.014 5 O -0.300 6.300 6 C 0.024 3.976 7 H 0.107 0.893 8 C -0.230 4.230 9 C 0.045 3.955 10 H 0.071 0.929 11 N -0.351 5.351 12 C -0.374 4.374 13 H 0.090 0.910 14 C -0.270 4.270 15 N -0.617 5.617 16 Si 0.801 3.199 17 H -0.207 1.207 18 H -0.222 1.222 19 H -0.203 1.203 20 C -0.099 4.099 21 C -0.171 4.171 22 C -0.172 4.172 23 H 0.091 0.909 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.125 0.875 34 H 0.217 0.783 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.997 -13.251 6.108 15.775 hybrid contribution -0.736 0.741 -0.847 1.345 sum 5.260 -12.510 5.261 14.555 Atomic orbital electron populations 1.21769 0.95234 1.02370 1.01604 1.21391 0.96420 0.94151 1.02917 1.21525 0.93887 0.98413 1.01711 1.22632 0.94978 0.83497 1.00317 1.88002 1.20708 1.26893 1.94445 1.23049 0.81112 0.97334 0.96072 0.89254 1.24242 1.00788 1.00676 0.97303 1.21458 0.87825 0.91999 0.94252 0.92938 1.42343 1.05617 1.43921 1.43265 1.19653 0.93776 1.12145 1.11811 0.91017 1.25539 0.95530 1.03166 1.02716 1.69868 0.98963 1.47199 1.45665 0.85235 0.76125 0.79366 0.79164 1.20676 1.22246 1.20341 1.22624 0.97141 0.95102 0.94987 1.21488 0.91507 1.02594 1.01480 1.21308 0.98922 0.99220 0.97793 0.90859 0.92821 0.93715 0.91404 0.90308 0.92331 0.94029 0.93610 0.91696 0.94271 0.87464 0.78271 0.94327 0.92011 0.90736 0.90874 0.94446 0.91669 0.94475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.91 71.98 0.71 -2.44 16 2 C -0.11 -2.42 5.93 30.59 0.18 -2.23 16 3 C -0.12 -3.53 5.58 30.59 0.17 -3.36 16 4 C 0.06 1.86 5.79 71.98 0.42 2.28 16 5 O -0.38 -14.82 7.64 -148.98 -1.14 -15.96 16 6 C 0.08 2.73 3.77 31.12 0.12 2.85 16 7 H 0.09 2.34 7.85 -2.38 -0.02 2.32 16 8 C -0.19 -6.85 7.36 31.12 0.23 -6.62 16 9 C 0.16 6.56 4.00 45.52 0.18 6.75 16 10 H 0.05 2.20 8.08 -2.39 -0.02 2.19 16 11 N -0.71 -38.54 4.73 -320.45 -1.51 -40.05 16 12 C -0.24 -14.22 9.98 84.03 0.84 -13.38 16 13 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 14 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 15 N -0.97 -62.15 13.06 21.65 0.28 -61.87 16 16 Si 0.97 48.22 29.55 68.60 2.03 50.24 16 17 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 18 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 19 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 20 C -0.10 -3.26 1.34 -51.66 -0.07 -3.33 16 21 C -0.11 -2.72 9.07 71.98 0.65 -2.07 16 22 C -0.11 -4.27 8.43 71.98 0.61 -3.66 16 23 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.11 3.06 7.65 -2.39 -0.02 3.04 16 34 H 0.38 22.45 5.27 -92.71 -0.49 21.96 16 35 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.07 1.49 7.34 -2.39 -0.02 1.48 16 39 H 0.04 1.66 5.64 -2.39 -0.01 1.64 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -69.46 324.92 4.64 -64.81 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: 0.48 Total: 32.26 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: 4.51 Total: -29.44 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -1.23 Total: -101.92 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -1.14 Total: -15.96 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.24 kcal Total: -69.46 4.64 -64.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336765655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.333 kcal (2) G-P(sol) polarization free energy of solvation -69.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds