Wall clock time and date at job start Sun Mar 29 2020 22:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47042 * 2 1 4 4 C 1.52995 * 109.47320 * 120.00712 * 2 1 3 5 5 C 1.53008 * 109.53060 * 299.90115 * 4 2 1 6 6 O 1.42905 * 109.46790 * 186.43565 * 5 4 2 7 7 C 1.53118 * 109.50755 * 59.99765 * 4 2 1 8 8 C 1.53113 * 109.16326 * 177.59828 * 7 4 2 9 9 C 1.53034 * 109.28004 * 302.34455 * 8 7 4 10 10 N 1.46847 * 109.52219 * 59.17948 * 9 8 7 11 11 C 1.46894 * 111.00445 * 174.16186 * 10 9 8 12 12 C 1.50706 * 109.47217 * 294.21433 * 11 10 9 13 13 H 1.08002 * 119.99328 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00245 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00112 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00031 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47110 * 90.00060 * 16 14 12 18 18 H 1.48505 * 109.47379 * 209.99895 * 16 14 12 19 19 H 1.48492 * 109.47127 * 330.00103 * 16 14 12 20 20 C 1.46852 * 111.19652 * 298.26084 * 10 9 8 21 21 H 1.09002 * 109.46927 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47010 * 299.99550 * 1 2 3 23 23 H 1.08997 * 109.46837 * 59.99817 * 1 2 3 24 24 H 1.09002 * 109.46916 * 240.00153 * 2 1 3 25 25 H 1.08997 * 109.47313 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47594 * 300.00575 * 3 2 1 27 27 H 1.09010 * 109.46583 * 60.00584 * 3 2 1 28 28 H 1.08999 * 109.47255 * 306.43102 * 5 4 2 29 29 H 1.08997 * 109.47058 * 66.43354 * 5 4 2 30 30 H 0.96701 * 114.00018 * 180.02562 * 6 5 4 31 31 H 1.08994 * 109.52120 * 57.68962 * 7 4 2 32 32 H 1.09005 * 109.51769 * 297.50396 * 7 4 2 33 33 H 1.09003 * 109.50263 * 62.28854 * 8 7 4 34 34 H 1.09002 * 109.50307 * 182.40516 * 8 7 4 35 35 H 1.08998 * 109.46652 * 179.19282 * 9 8 7 36 36 H 1.09000 * 109.46191 * 299.16522 * 9 8 7 37 37 H 1.09000 * 109.46893 * 54.20734 * 11 10 9 38 38 H 1.08999 * 109.47442 * 174.20863 * 11 10 9 39 39 H 0.96996 * 119.99826 * 180.02562 * 15 14 12 40 40 H 1.08997 * 109.46358 * 301.72031 * 20 10 9 41 41 H 1.09002 * 109.46223 * 181.75849 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.5329 0.0001 2.4994 6 8 2.1294 -0.5820 3.6602 7 6 1.5301 -2.1651 1.2498 8 6 2.0938 -2.8967 2.4711 9 6 3.6225 -2.8384 2.4339 10 7 4.0604 -1.4367 2.4354 11 6 5.5225 -1.3419 2.5398 12 6 5.9652 -1.8629 3.8829 13 1 5.2333 -2.2275 4.5884 14 6 7.3043 -1.8741 4.2108 15 7 8.1955 -1.4305 3.3514 16 14 7.8528 -2.5192 5.8758 17 1 8.1193 -3.9768 5.7786 18 1 9.0919 -1.8164 6.2953 19 1 6.7833 -2.2773 6.8772 20 6 3.5704 -0.7261 1.2473 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9562 0.8901 28 1 1.8005 1.0553 2.4438 29 1 0.4490 -0.0970 2.5604 30 1 1.8523 -0.1735 4.4917 31 1 1.8587 -2.6679 0.3403 32 1 0.4410 -2.1667 1.2948 33 1 1.7333 -2.4169 3.3810 34 1 1.7688 -3.9370 2.4542 35 1 4.0268 -3.3460 3.3097 36 1 3.9829 -3.3304 1.5305 37 1 5.9824 -1.9361 1.7501 38 1 5.8275 -0.3007 2.4354 39 1 9.1376 -1.4387 3.5820 40 1 3.9310 -1.2280 0.3495 41 1 3.9368 0.3004 1.2613 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339707263.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:55 Heat of formation + Delta-G solvation = -49.547732 kcal Electronic energy + Delta-G solvation = -19137.221134 eV Core-core repulsion = 16437.965757 eV Total energy + Delta-G solvation = -2699.255377 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.72446 -35.73463 -35.14077 -32.87780 -31.54782 -29.51244 -27.55729 -26.53765 -25.42377 -23.48241 -22.53231 -21.18528 -19.37880 -18.01849 -16.96017 -16.10402 -15.11804 -14.95520 -14.38080 -14.31465 -13.79217 -13.50416 -13.13056 -13.00225 -12.98024 -12.24671 -12.01844 -11.98333 -11.87444 -11.54612 -11.32782 -11.08625 -10.92284 -10.74757 -10.64612 -10.40975 -10.34916 -9.91951 -9.77069 -9.68491 -9.36398 -8.95100 -8.88638 -8.31515 -6.78854 -5.90579 -3.90137 3.38458 3.44110 3.49203 4.51752 4.66287 4.81223 4.90408 5.16905 5.31228 5.40699 5.44887 5.54993 5.62397 5.69532 5.72511 5.77301 5.84426 5.89276 5.96770 6.02024 6.16515 6.22912 6.27225 6.33675 6.35757 6.44786 6.50340 6.51712 6.63146 6.73068 7.02740 7.19651 7.49857 7.55801 7.97768 8.30427 8.36346 8.51197 8.80272 9.19640 9.73292 11.20517 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.036538 B = 0.006594 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.134832 B = 4245.164238 C = 4474.671221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.152 4.152 4 C -0.050 4.050 5 C 0.095 3.905 6 O -0.512 6.512 7 C -0.103 4.103 8 C -0.124 4.124 9 C 0.075 3.925 10 N -0.503 5.503 11 C 0.193 3.807 12 C -0.494 4.494 13 H 0.064 0.936 14 C 0.051 3.949 15 N -0.903 5.903 16 Si 0.896 3.104 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.273 1.273 20 C 0.073 3.927 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.036 0.964 29 H 0.027 0.973 30 H 0.350 0.650 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.004 0.996 37 H -0.017 1.017 38 H 0.025 0.975 39 H 0.259 0.741 40 H 0.012 0.988 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.585 2.906 -4.974 16.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.104 4.104 3 C -0.209 4.209 4 C -0.050 4.050 5 C 0.016 3.984 6 O -0.314 6.314 7 C -0.141 4.141 8 C -0.162 4.162 9 C -0.053 4.053 10 N -0.227 5.227 11 C 0.068 3.932 12 C -0.533 4.533 13 H 0.082 0.918 14 C -0.149 4.149 15 N -0.544 5.544 16 Si 0.724 3.276 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.198 1.198 20 C -0.056 4.056 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.195 0.805 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.022 0.978 37 H 0.000 1.000 38 H 0.043 0.957 39 H 0.068 0.932 40 H 0.030 0.970 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.291 2.779 -5.032 16.336 hybrid contribution 0.588 -0.322 0.363 0.762 sum -14.703 2.457 -4.669 15.621 Atomic orbital electron populations 1.21930 0.95566 1.01728 1.01343 1.21082 0.95380 0.96242 0.97706 1.21973 1.01820 0.95854 1.01293 1.20672 0.96440 0.95003 0.92919 1.22014 0.94015 0.95349 0.86986 1.87168 1.70702 1.59184 1.14297 1.21608 0.98990 0.94777 0.98701 1.21861 0.96720 0.97883 0.99688 1.21781 0.93562 0.90484 0.99482 1.61887 1.13919 1.11510 1.35411 1.19684 0.80838 0.96502 0.96219 1.21200 0.91568 1.39996 1.00553 0.91774 1.25000 0.96788 0.95978 0.97157 1.69972 1.01334 1.47807 1.35268 0.86532 0.77981 0.78682 0.84396 1.20925 1.21450 1.19826 1.21968 0.92372 0.99044 0.92249 0.92467 0.92632 0.93130 0.91184 0.92003 0.93158 0.92434 0.94548 0.95477 0.80527 0.93235 0.92810 0.88481 0.93942 0.90549 0.97839 0.99957 0.95697 0.93174 0.97017 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.50 37.16 0.32 -1.20 16 2 C -0.09 -1.04 2.28 -90.62 -0.21 -1.25 16 3 C -0.15 -1.79 8.50 37.16 0.32 -1.47 16 4 C -0.05 -0.74 0.32 -154.43 -0.05 -0.79 16 5 C 0.09 1.34 5.13 37.16 0.19 1.53 16 6 O -0.51 -8.45 8.11 -35.23 -0.29 -8.73 16 7 C -0.10 -1.54 4.36 -26.61 -0.12 -1.65 16 8 C -0.12 -2.11 5.62 -26.66 -0.15 -2.26 16 9 C 0.08 1.59 5.24 -3.84 -0.02 1.57 16 10 N -0.50 -11.33 2.68 -236.12 -0.63 -11.96 16 11 C 0.19 5.28 4.72 -4.98 -0.02 5.25 16 12 C -0.49 -14.36 8.43 -34.44 -0.29 -14.65 16 13 H 0.06 1.85 7.12 -52.49 -0.37 1.48 16 14 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 15 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 16 Si 0.90 22.27 29.54 -169.99 -5.02 17.24 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 20 C 0.07 1.39 3.79 -3.83 -0.01 1.37 16 21 H 0.06 0.58 6.49 -51.93 -0.34 0.24 16 22 H 0.05 0.55 6.59 -51.93 -0.34 0.21 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.81 6.45 -51.93 -0.34 0.47 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.65 6.30 -51.92 -0.33 0.33 16 28 H 0.04 0.51 6.11 -51.93 -0.32 0.19 16 29 H 0.03 0.34 6.80 -51.93 -0.35 -0.02 16 30 H 0.35 4.46 9.12 45.56 0.42 4.88 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.70 6.58 -51.93 -0.34 0.36 16 33 H 0.10 1.70 5.42 -51.93 -0.28 1.41 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.76 6.70 -51.93 -0.35 1.41 16 36 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 37 H -0.02 -0.51 8.12 -51.93 -0.42 -0.93 16 38 H 0.02 0.73 7.99 -51.93 -0.41 0.31 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 40 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.06 1.26 6.36 -51.93 -0.33 0.93 16 LS Contribution 298.71 15.07 4.50 4.50 Total: -1.00 -31.52 298.71 -7.05 -38.57 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.20 Total: -0.47 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.14 Total: -12.15 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.10 Total: -38.95 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.29 Total: -8.73 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.52 -7.05 -38.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339707263.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.982 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds