Wall clock time and date at job start Sun Mar 29 2020 22:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47270 * 2 1 4 4 C 1.53003 * 109.47053 * 239.99715 * 2 1 3 5 5 O 1.42901 * 109.46666 * 60.00451 * 4 2 1 6 6 C 1.52999 * 109.46987 * 120.00050 * 2 1 3 7 7 H 1.09003 * 109.47165 * 59.99780 * 6 2 1 8 8 N 1.46907 * 109.47024 * 299.99826 * 6 2 1 9 9 C 1.46899 * 110.99669 * 152.23891 * 8 6 2 10 10 C 1.53003 * 109.46861 * 186.03935 * 9 8 6 11 11 C 1.50699 * 109.47303 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99758 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00242 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99992 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 120.00038 * 359.97438 * 13 11 10 16 16 H 1.48492 * 109.47382 * 89.99778 * 15 13 11 17 17 H 1.48502 * 109.47110 * 210.00141 * 15 13 11 18 18 H 1.48509 * 109.47057 * 329.99758 * 15 13 11 19 19 C 1.53001 * 109.46987 * 179.97438 * 6 2 1 20 20 C 1.52997 * 117.49559 * 117.90788 * 19 6 2 21 21 C 1.53005 * 117.49465 * 186.56474 * 19 6 2 22 22 H 1.08998 * 109.47169 * 300.00107 * 1 2 3 23 23 H 1.08999 * 109.47081 * 59.99549 * 1 2 3 24 24 H 1.08993 * 109.47470 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47031 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.46724 * 300.00389 * 3 2 1 27 27 H 1.08998 * 109.47112 * 59.99858 * 3 2 1 28 28 H 1.08992 * 109.46905 * 179.97438 * 4 2 1 29 29 H 1.08993 * 109.47176 * 300.00417 * 4 2 1 30 30 H 0.96702 * 113.99980 * 180.02562 * 5 4 2 31 31 H 1.00895 * 110.99888 * 276.19244 * 8 6 2 32 32 H 1.08995 * 109.47314 * 306.03659 * 9 8 6 33 33 H 1.09000 * 109.47174 * 66.04419 * 9 8 6 34 34 H 1.09004 * 109.47005 * 300.00261 * 10 9 8 35 35 H 1.08991 * 109.47000 * 60.00209 * 10 9 8 36 36 H 0.96999 * 120.00006 * 180.02562 * 14 13 11 37 37 H 1.08992 * 115.55075 * 332.23160 * 19 6 2 38 38 H 1.09005 * 117.49597 * 214.99732 * 20 19 6 39 39 H 1.08992 * 117.50264 * 0.02562 * 20 19 6 40 40 H 1.08998 * 117.50375 * 359.97438 * 21 19 6 41 41 H 1.08995 * 117.49549 * 144.99802 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5637 -0.0476 -2.4160 6 6 2.0400 -0.7213 1.2492 7 1 1.6766 -1.7489 1.2492 8 7 1.5503 -0.0287 2.4487 9 6 1.4253 -0.9584 3.5792 10 6 0.7736 -0.2387 4.7617 11 6 0.6459 -1.1922 5.9216 12 1 0.9943 -2.2100 5.8249 13 6 0.0833 -0.7658 7.1059 14 7 -0.0286 -1.5981 8.1181 15 14 -0.5200 0.9942 7.2730 16 1 -1.9434 1.0711 6.8572 17 1 -0.3931 1.4288 8.6873 18 1 0.2973 1.8819 6.4072 19 6 3.5700 -0.7218 1.2489 20 6 4.2768 -0.0009 2.3984 21 6 4.2763 -1.5305 2.3390 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 3.1299 1.4424 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1299 -0.7209 -1.2494 29 1 1.6766 -1.7489 -1.2492 30 1 1.8487 -0.4514 -3.2472 31 1 2.1465 0.7501 2.6852 32 1 0.8076 -1.8070 3.2851 33 1 2.4145 -1.3123 3.8697 34 1 1.3913 0.6099 5.0557 35 1 -0.2155 0.1151 4.4712 36 1 -0.4247 -1.2982 8.9511 37 1 4.0399 -0.6838 0.2662 38 1 5.2119 0.5115 2.1719 39 1 3.6520 0.4734 3.1551 40 1 3.6510 -2.0617 3.0566 41 1 5.2109 -2.0244 2.0733 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339731219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:02 Heat of formation + Delta-G solvation = -31.715036 kcal Electronic energy + Delta-G solvation = -18372.689800 eV Core-core repulsion = 15674.207707 eV Total energy + Delta-G solvation = -2698.482093 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.77543 -37.15915 -34.68953 -34.16563 -32.33723 -29.56941 -27.05652 -26.90012 -25.46149 -23.49182 -22.23731 -20.61941 -20.26435 -18.25728 -17.55411 -16.76521 -16.47865 -15.24269 -15.02131 -14.69824 -14.19684 -13.56099 -13.30080 -13.10122 -12.87504 -12.65597 -12.43948 -12.27875 -11.66610 -11.47305 -11.40104 -11.26431 -11.03084 -11.00031 -10.79632 -10.40145 -10.28340 -10.05454 -9.94447 -9.81325 -9.76074 -9.56654 -9.20511 -8.52013 -7.81899 -6.03076 -4.01183 3.34269 3.41075 3.46012 3.80644 4.11719 4.47777 4.61505 4.86466 4.89825 5.03727 5.07787 5.15990 5.27023 5.28192 5.31931 5.50886 5.65719 5.71631 5.72851 5.86413 5.95347 6.07855 6.16264 6.18195 6.22063 6.25658 6.26454 6.41042 6.43031 6.57952 6.72788 6.82997 7.17445 7.41113 7.52919 7.64692 7.79115 7.94682 8.54556 9.01055 9.59758 11.10329 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029568 B = 0.005793 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.730813 B = 4832.017324 C = 5249.431565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.045 4.045 3 C -0.132 4.132 4 C 0.083 3.917 5 O -0.568 6.568 6 C 0.127 3.873 7 H 0.078 0.922 8 N -0.684 5.684 9 C 0.066 3.934 10 C -0.008 4.008 11 C -0.520 4.520 12 H 0.070 0.930 13 C 0.067 3.933 14 N -0.905 5.905 15 Si 0.882 3.118 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.265 1.265 19 C -0.183 4.183 20 C -0.184 4.184 21 C -0.185 4.185 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.044 0.956 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.373 0.627 31 H 0.339 0.661 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.011 0.989 35 H 0.020 0.980 36 H 0.263 0.737 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.051 2.962 -18.651 20.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.046 4.046 3 C -0.189 4.189 4 C 0.005 3.995 5 O -0.373 6.373 6 C 0.016 3.984 7 H 0.096 0.904 8 N -0.316 5.316 9 C -0.061 4.061 10 C -0.046 4.046 11 C -0.558 4.558 12 H 0.088 0.912 13 C -0.134 4.134 14 N -0.544 5.544 15 Si 0.709 3.291 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.190 1.190 19 C -0.202 4.202 20 C -0.222 4.222 21 C -0.221 4.221 22 H 0.090 0.910 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.219 0.781 31 H 0.161 0.839 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.030 0.970 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.038 3.295 -18.160 19.419 hybrid contribution 0.991 0.222 0.101 1.020 sum 7.029 3.517 -18.059 19.695 Atomic orbital electron populations 1.21648 0.93423 1.01317 1.02096 1.20439 0.96957 0.95885 0.91343 1.21712 0.99963 0.95342 1.01928 1.22331 0.96875 0.94709 0.85616 1.86491 1.77613 1.57316 1.15865 1.21038 0.88905 0.97572 0.90926 0.90370 1.60660 1.54775 1.11600 1.04612 1.22166 0.98985 0.94923 0.90065 1.19520 0.95996 0.96236 0.92844 1.21071 1.40281 0.98682 0.95799 0.91204 1.24998 0.95292 0.97394 0.95691 1.69918 1.45394 1.35353 1.03718 0.86743 0.79674 0.85648 0.76986 1.20275 1.21566 1.18988 1.23303 0.96634 1.05752 0.94548 1.23087 1.02274 0.95307 1.01502 1.23213 1.02421 0.94204 1.02300 0.90957 0.93033 0.93731 0.93433 0.92680 0.91992 0.93806 0.93936 0.78131 0.83936 0.91937 0.95132 0.97023 0.96172 0.92766 0.87961 0.89112 0.87977 0.87659 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 8.17 37.16 0.30 -1.45 16 2 C -0.05 -0.57 0.45 -154.51 -0.07 -0.64 16 3 C -0.13 -1.64 7.84 37.16 0.29 -1.35 16 4 C 0.08 0.87 5.67 37.16 0.21 1.08 16 5 O -0.57 -5.88 12.31 -35.23 -0.43 -6.31 16 6 C 0.13 1.72 1.70 -67.71 -0.11 1.60 16 7 H 0.08 1.13 7.66 -51.93 -0.40 0.73 16 8 N -0.68 -11.05 4.72 -106.72 -0.50 -11.56 16 9 C 0.07 1.30 4.83 -3.82 -0.02 1.28 16 10 C -0.01 -0.19 4.35 -27.88 -0.12 -0.32 16 11 C -0.52 -14.84 9.66 -34.44 -0.33 -15.18 16 12 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 15 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 18 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 19 C -0.18 -2.21 4.26 -90.62 -0.39 -2.60 16 20 C -0.18 -2.34 9.27 -26.69 -0.25 -2.59 16 21 C -0.18 -2.38 9.69 -26.69 -0.26 -2.64 16 22 H 0.07 1.11 7.60 -51.93 -0.39 0.71 16 23 H 0.05 0.69 7.68 -51.93 -0.40 0.30 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.55 7.18 -51.93 -0.37 0.18 16 26 H 0.05 0.69 7.68 -51.93 -0.40 0.30 16 27 H 0.06 0.82 7.28 -51.93 -0.38 0.44 16 28 H 0.04 0.42 6.14 -51.93 -0.32 0.10 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.37 2.14 9.12 45.56 0.42 2.55 16 31 H 0.34 5.34 5.43 -39.29 -0.21 5.13 16 32 H 0.06 1.27 7.90 -51.93 -0.41 0.86 16 33 H 0.03 0.59 4.86 -51.93 -0.25 0.34 16 34 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 35 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.10 1.11 6.02 -51.93 -0.31 0.79 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.10 1.47 5.44 -51.93 -0.28 1.18 16 40 H 0.11 1.57 5.77 -51.93 -0.30 1.27 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 309.97 15.07 4.67 4.67 Total: -1.00 -30.95 309.97 -7.06 -38.01 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.06 Total: 5.99 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -0.84 Total: -20.91 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.27 Total: -38.87 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.43 Total: -6.31 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.95 -7.06 -38.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339731219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.298 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds