Wall clock time and date at job start Sun Mar 29 2020 22:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47270 * 2 1 4 4 C 1.53003 * 109.47053 * 239.99715 * 2 1 3 5 5 O 1.42901 * 109.46666 * 60.00451 * 4 2 1 6 6 C 1.52999 * 109.46987 * 120.00050 * 2 1 3 7 7 H 1.09003 * 109.47165 * 59.99780 * 6 2 1 8 8 N 1.46907 * 109.47024 * 299.99826 * 6 2 1 9 9 C 1.46899 * 110.99669 * 152.23891 * 8 6 2 10 10 C 1.53003 * 109.46861 * 186.03935 * 9 8 6 11 11 C 1.50699 * 109.47303 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99758 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00242 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99992 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 120.00038 * 359.97438 * 13 11 10 16 16 H 1.48492 * 109.47382 * 89.99778 * 15 13 11 17 17 H 1.48502 * 109.47110 * 210.00141 * 15 13 11 18 18 H 1.48509 * 109.47057 * 329.99758 * 15 13 11 19 19 C 1.53001 * 109.46987 * 179.97438 * 6 2 1 20 20 C 1.52997 * 117.49559 * 117.90788 * 19 6 2 21 21 C 1.53005 * 117.49465 * 186.56474 * 19 6 2 22 22 H 1.08998 * 109.47169 * 300.00107 * 1 2 3 23 23 H 1.08999 * 109.47081 * 59.99549 * 1 2 3 24 24 H 1.08993 * 109.47470 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47031 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.46724 * 300.00389 * 3 2 1 27 27 H 1.08998 * 109.47112 * 59.99858 * 3 2 1 28 28 H 1.08992 * 109.46905 * 179.97438 * 4 2 1 29 29 H 1.08993 * 109.47176 * 300.00417 * 4 2 1 30 30 H 0.96702 * 113.99980 * 180.02562 * 5 4 2 31 31 H 1.00895 * 110.99888 * 276.19244 * 8 6 2 32 32 H 1.08995 * 109.47314 * 306.03659 * 9 8 6 33 33 H 1.09000 * 109.47174 * 66.04419 * 9 8 6 34 34 H 1.09004 * 109.47005 * 300.00261 * 10 9 8 35 35 H 1.08991 * 109.47000 * 60.00209 * 10 9 8 36 36 H 0.96999 * 120.00006 * 180.02562 * 14 13 11 37 37 H 1.08992 * 115.55075 * 332.23160 * 19 6 2 38 38 H 1.09005 * 117.49597 * 214.99732 * 20 19 6 39 39 H 1.08992 * 117.50264 * 0.02562 * 20 19 6 40 40 H 1.08998 * 117.50375 * 359.97438 * 21 19 6 41 41 H 1.08995 * 117.49549 * 144.99802 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5637 -0.0476 -2.4160 6 6 2.0400 -0.7213 1.2492 7 1 1.6766 -1.7489 1.2492 8 7 1.5503 -0.0287 2.4487 9 6 1.4253 -0.9584 3.5792 10 6 0.7736 -0.2387 4.7617 11 6 0.6459 -1.1922 5.9216 12 1 0.9943 -2.2100 5.8249 13 6 0.0833 -0.7658 7.1059 14 7 -0.0286 -1.5981 8.1181 15 14 -0.5200 0.9942 7.2730 16 1 -1.9434 1.0711 6.8572 17 1 -0.3931 1.4288 8.6873 18 1 0.2973 1.8819 6.4072 19 6 3.5700 -0.7218 1.2489 20 6 4.2768 -0.0009 2.3984 21 6 4.2763 -1.5305 2.3390 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 3.1299 1.4424 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1299 -0.7209 -1.2494 29 1 1.6766 -1.7489 -1.2492 30 1 1.8487 -0.4514 -3.2472 31 1 2.1465 0.7501 2.6852 32 1 0.8076 -1.8070 3.2851 33 1 2.4145 -1.3123 3.8697 34 1 1.3913 0.6099 5.0557 35 1 -0.2155 0.1151 4.4712 36 1 -0.4247 -1.2982 8.9511 37 1 4.0399 -0.6838 0.2662 38 1 5.2119 0.5115 2.1719 39 1 3.6520 0.4734 3.1551 40 1 3.6510 -2.0617 3.0566 41 1 5.2109 -2.0244 2.0733 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339731219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:01 Heat of formation + Delta-G solvation = -53.486297 kcal Electronic energy + Delta-G solvation = -18373.633873 eV Core-core repulsion = 15674.207707 eV Total energy + Delta-G solvation = -2699.426166 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.85958 -38.06072 -36.03031 -35.48323 -34.25516 -31.33661 -28.15983 -27.94036 -26.80349 -24.96830 -23.45995 -21.98523 -21.64032 -19.36381 -18.90037 -18.33901 -17.72251 -16.38100 -16.19848 -16.03820 -15.66627 -14.89829 -14.72685 -14.51545 -14.43850 -14.00884 -13.56346 -13.43946 -13.13882 -12.94090 -12.66187 -12.54068 -12.41280 -12.21777 -12.00670 -11.80789 -11.75424 -11.55776 -11.40502 -11.23131 -11.05721 -10.84533 -10.76615 -10.65429 -9.15474 -8.30161 -6.34050 1.36739 1.37120 1.50011 2.36081 2.79089 3.05859 3.17002 3.59682 3.80809 3.91004 4.03059 4.10334 4.19038 4.31143 4.31222 4.43754 4.56733 4.63912 4.67543 4.73156 4.78563 4.89284 4.97371 5.03673 5.07303 5.16211 5.20769 5.22420 5.24523 5.37157 5.38779 5.51329 5.56419 5.61670 5.66185 6.20185 6.27711 6.58072 6.75000 7.01239 7.30973 8.86604 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029568 B = 0.005793 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.730813 B = 4832.017324 C = 5249.431565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.044 4.044 3 C -0.126 4.126 4 C 0.087 3.913 5 O -0.584 6.584 6 C 0.127 3.873 7 H 0.068 0.932 8 N -0.683 5.683 9 C 0.083 3.917 10 C -0.002 4.002 11 C -0.530 4.530 12 H 0.032 0.968 13 C 0.007 3.993 14 N -0.951 5.951 15 Si 0.952 3.048 16 H -0.269 1.269 17 H -0.284 1.284 18 H -0.248 1.248 19 C -0.169 4.169 20 C -0.186 4.186 21 C -0.193 4.193 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.040 0.960 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.394 0.606 31 H 0.344 0.656 32 H 0.049 0.951 33 H 0.030 0.970 34 H 0.016 0.984 35 H 0.017 0.983 36 H 0.266 0.734 37 H 0.127 0.873 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.006 4.520 -20.656 22.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.045 4.045 3 C -0.183 4.183 4 C 0.009 3.991 5 O -0.391 6.391 6 C 0.017 3.983 7 H 0.086 0.914 8 N -0.316 5.316 9 C -0.046 4.046 10 C -0.040 4.040 11 C -0.569 4.569 12 H 0.050 0.950 13 C -0.190 4.190 14 N -0.592 5.592 15 Si 0.775 3.225 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.171 1.171 19 C -0.189 4.189 20 C -0.223 4.223 21 C -0.229 4.229 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.243 0.757 31 H 0.166 0.834 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.145 0.855 38 H 0.130 0.870 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.008 4.847 -20.206 21.929 hybrid contribution 0.698 -0.355 0.691 1.044 sum 7.706 4.492 -19.515 21.457 Atomic orbital electron populations 1.21593 0.94623 1.00776 1.01138 1.20402 0.95956 0.96250 0.91881 1.21647 1.00626 0.94867 1.01209 1.22212 0.97682 0.94359 0.84801 1.86434 1.78003 1.57859 1.16841 1.21049 0.90230 0.96930 0.90140 0.91367 1.60549 1.55743 1.11167 1.04145 1.21797 0.98254 0.94563 0.89956 1.19405 0.96272 0.95526 0.92786 1.21403 1.39747 0.98028 0.97692 0.94994 1.25955 0.95499 1.02283 0.95225 1.70064 1.46748 1.37844 1.04531 0.85635 0.79465 0.79909 0.77454 1.19466 1.20932 1.17147 1.23250 0.95287 1.04892 0.95430 1.23111 1.02959 0.95049 1.01177 1.23190 1.03051 0.94407 1.02297 0.92952 0.92846 0.94076 0.92226 0.92832 0.93249 0.92111 0.93541 0.75700 0.83375 0.93198 0.95193 0.96546 0.96447 0.92485 0.85524 0.86965 0.89888 0.90321 0.87368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.28 8.17 71.98 0.59 -2.69 16 2 C -0.04 -1.01 0.45 -52.18 -0.02 -1.04 16 3 C -0.13 -2.83 7.84 71.98 0.56 -2.27 16 4 C 0.09 1.58 5.67 71.98 0.41 1.99 16 5 O -0.58 -10.31 12.31 -148.98 -1.83 -12.14 16 6 C 0.13 3.26 1.70 44.91 0.08 3.34 16 7 H 0.07 1.91 7.66 -2.39 -0.02 1.90 16 8 N -0.68 -21.60 4.72 -491.55 -2.32 -23.92 16 9 C 0.08 3.28 4.83 86.30 0.42 3.70 16 10 C 0.00 -0.10 4.35 29.85 0.13 0.03 16 11 C -0.53 -31.08 9.66 25.60 0.25 -30.83 16 12 H 0.03 2.05 7.99 -2.91 -0.02 2.02 16 13 C 0.01 0.43 5.47 84.65 0.46 0.89 16 14 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 15 Si 0.95 45.43 27.47 68.60 1.88 47.31 16 16 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 18 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 19 C -0.17 -3.67 4.26 -10.79 -0.05 -3.71 16 20 C -0.19 -4.31 9.27 30.62 0.28 -4.03 16 21 C -0.19 -4.66 9.69 30.62 0.30 -4.37 16 22 H 0.05 1.57 7.60 -2.39 -0.02 1.56 16 23 H 0.05 1.37 7.68 -2.39 -0.02 1.35 16 24 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.06 1.19 7.18 -2.39 -0.02 1.17 16 26 H 0.05 1.22 7.68 -2.39 -0.02 1.21 16 27 H 0.05 1.22 7.28 -2.39 -0.02 1.20 16 28 H 0.06 0.90 6.14 -2.39 -0.01 0.89 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.39 3.24 9.12 -74.06 -0.68 2.56 16 31 H 0.34 10.43 5.43 -89.70 -0.49 9.95 16 32 H 0.05 2.08 7.90 -2.39 -0.02 2.06 16 33 H 0.03 1.19 4.86 -2.39 -0.01 1.18 16 34 H 0.02 0.76 7.20 -2.39 -0.02 0.75 16 35 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 36 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 37 H 0.13 2.20 6.02 -2.39 -0.01 2.18 16 38 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.08 2.28 5.44 -2.39 -0.01 2.26 16 40 H 0.08 2.35 5.77 -2.39 -0.01 2.34 16 41 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -67.26 309.97 1.24 -66.03 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -0.20 Total: 21.86 kcal Atomic # 6 Polarization: -42.39 SS G_CDS: 3.40 Total: -38.99 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -2.02 Total: -84.07 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -1.83 Total: -12.14 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.31 kcal Total: -67.26 1.24 -66.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339731219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.539 kcal (2) G-P(sol) polarization free energy of solvation -67.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds