Wall clock time and date at job start Sun Mar 29 2020 22:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47136 * 2 1 4 4 C 1.53001 * 109.47080 * 120.00140 * 2 1 3 5 5 O 1.42900 * 109.47163 * 300.00144 * 4 2 1 6 6 C 1.53001 * 109.47418 * 239.99667 * 2 1 3 7 7 H 1.08996 * 109.47466 * 300.00814 * 6 2 1 8 8 N 1.46901 * 109.46778 * 60.00073 * 6 2 1 9 9 C 1.46900 * 111.00374 * 222.93949 * 8 6 2 10 10 C 1.52998 * 109.47351 * 186.06788 * 9 8 6 11 11 C 1.50700 * 109.46782 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00750 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99649 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00011 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99911 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47343 * 89.99757 * 15 13 11 17 17 H 1.48498 * 109.47344 * 209.99592 * 15 13 11 18 18 H 1.48501 * 109.47302 * 329.99678 * 15 13 11 19 19 C 1.53000 * 109.47418 * 179.97438 * 6 2 1 20 20 C 1.52999 * 117.49854 * 251.78407 * 19 6 2 21 21 C 1.52998 * 117.49996 * 183.12298 * 19 6 2 22 22 H 1.09008 * 109.46918 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47252 * 60.00380 * 1 2 3 24 24 H 1.08997 * 109.47213 * 300.00006 * 1 2 3 25 25 H 1.09010 * 109.47070 * 60.00214 * 3 2 1 26 26 H 1.09002 * 109.47319 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47371 * 299.99650 * 3 2 1 28 28 H 1.09004 * 109.47255 * 59.99717 * 4 2 1 29 29 H 1.08996 * 109.47615 * 180.02562 * 4 2 1 30 30 H 0.96696 * 114.00162 * 180.02562 * 5 4 2 31 31 H 1.00900 * 111.00075 * 346.89732 * 8 6 2 32 32 H 1.08999 * 109.46844 * 306.07662 * 9 8 6 33 33 H 1.09002 * 109.46798 * 66.07161 * 9 8 6 34 34 H 1.08995 * 109.47435 * 300.00501 * 10 9 8 35 35 H 1.09002 * 109.46865 * 60.00414 * 10 9 8 36 36 H 0.97005 * 119.99967 * 180.02562 * 14 13 11 37 37 H 1.08998 * 115.54617 * 37.44922 * 19 6 2 38 38 H 1.09004 * 117.50141 * 0.02562 * 20 19 6 39 39 H 1.09003 * 117.49474 * 145.01674 * 20 19 6 40 40 H 1.08993 * 117.49929 * 214.97706 * 21 19 6 41 41 H 1.09003 * 117.49737 * 359.97438 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.5636 -0.0477 2.4160 6 6 2.0401 -0.7213 -1.2492 7 1 1.6767 -1.7489 -1.2493 8 7 1.5504 -0.0288 -2.4486 9 6 1.0854 -0.9893 -3.4582 10 6 0.7262 -0.2432 -4.7447 11 6 0.2486 -1.2286 -5.7801 12 1 0.2052 -2.2816 -5.5440 13 6 -0.1329 -0.7858 -7.0289 14 7 -0.0804 0.4965 -7.3162 15 14 -0.7256 -2.0071 -8.3121 16 1 -2.1966 -2.1735 -8.1949 17 1 -0.3911 -1.5020 -9.6679 18 1 -0.0603 -3.3166 -8.0936 19 6 3.5701 -0.7208 -1.2495 20 6 4.2760 0.1836 -2.2618 21 6 4.2765 -1.3343 -2.4600 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 0.5138 0.8899 25 1 1.6766 1.9563 0.8901 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 -1.7490 1.2493 29 1 3.1299 -0.7209 1.2495 30 1 1.8493 -0.4510 3.2472 31 1 0.8230 0.6300 -2.2142 32 1 1.8762 -1.7105 -3.6649 33 1 0.2054 -1.5124 -3.0838 34 1 -0.0644 0.4779 -4.5379 35 1 1.6062 0.2798 -5.1191 36 1 -0.3492 0.8080 -8.1947 37 1 4.0404 -0.8479 -0.2744 38 1 3.6504 0.7785 -2.9273 39 1 5.2109 0.6511 -1.9528 40 1 5.2118 -1.8647 -2.2815 41 1 3.6512 -1.7387 -3.2560 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339731222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:04 Heat of formation + Delta-G solvation = -39.493476 kcal Electronic energy + Delta-G solvation = -18303.195905 eV Core-core repulsion = 15604.376513 eV Total energy + Delta-G solvation = -2698.819391 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.54765 -36.85596 -34.91347 -34.01314 -32.32960 -29.03118 -27.22130 -26.87270 -25.25001 -23.37572 -21.92473 -20.55877 -20.32439 -18.34508 -17.63786 -16.28524 -15.70928 -15.17182 -14.97907 -14.57742 -14.21566 -13.87024 -13.48150 -13.12520 -12.79855 -12.46095 -12.20145 -12.07351 -11.78642 -11.50178 -11.09393 -11.01452 -10.94746 -10.85125 -10.79222 -10.53844 -10.34134 -9.97996 -9.92194 -9.73733 -9.49542 -9.26197 -9.11282 -8.33407 -7.73711 -5.97957 -4.00330 3.32811 3.39163 3.42328 4.03047 4.28940 4.46242 4.75143 4.80624 4.97278 5.05796 5.24395 5.36613 5.38145 5.43294 5.49599 5.55125 5.69560 5.83397 5.90128 5.97592 6.04139 6.09551 6.13879 6.25537 6.27969 6.31220 6.45732 6.49706 6.56232 6.68812 6.89847 7.04847 7.49645 7.55986 7.76846 7.84890 8.01595 8.12098 8.46072 9.07122 9.63400 11.13381 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031912 B = 0.005280 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.207820 B = 5301.494281 C = 5654.046017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.066 4.066 3 C -0.129 4.129 4 C 0.086 3.914 5 O -0.570 6.570 6 C 0.126 3.874 7 H 0.051 0.949 8 N -0.680 5.680 9 C 0.064 3.936 10 C 0.028 3.972 11 C -0.521 4.521 12 H 0.053 0.947 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.891 3.109 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.152 4.152 20 C -0.155 4.155 21 C -0.184 4.184 22 H 0.049 0.951 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.374 0.626 31 H 0.338 0.662 32 H 0.059 0.941 33 H 0.013 0.987 34 H 0.012 0.988 35 H 0.025 0.975 36 H 0.260 0.740 37 H 0.094 0.906 38 H 0.118 0.882 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.848 -1.698 17.001 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.067 4.067 3 C -0.187 4.187 4 C 0.008 3.992 5 O -0.374 6.374 6 C 0.015 3.985 7 H 0.069 0.931 8 N -0.312 5.312 9 C -0.064 4.064 10 C -0.009 4.009 11 C -0.560 4.560 12 H 0.071 0.929 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.719 3.281 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.171 4.171 20 C -0.193 4.193 21 C -0.221 4.221 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.220 0.780 31 H 0.159 0.841 32 H 0.078 0.922 33 H 0.032 0.968 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.137 0.863 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.150 -1.118 16.104 17.275 hybrid contribution -0.867 -1.446 0.009 1.686 sum 5.283 -2.564 16.113 17.150 Atomic orbital electron populations 1.21860 0.94248 1.01681 1.02243 1.20792 0.95957 0.97044 0.92918 1.21693 1.01013 0.94322 1.01623 1.22281 0.97254 0.94408 0.85226 1.86482 1.77580 1.57431 1.15917 1.20914 0.92831 0.95957 0.88807 0.93138 1.60648 1.42314 1.18705 1.09576 1.22304 0.96630 0.94216 0.93204 1.19027 0.96814 0.95369 0.89720 1.21180 1.43670 0.93690 0.97460 0.92901 1.24985 0.95797 0.95082 0.98393 1.69972 1.48171 1.13349 1.21703 0.86615 0.79004 0.81467 0.81022 1.20744 1.21211 1.19927 1.22374 0.94070 1.06996 0.93687 1.22892 1.00570 0.93098 1.02698 1.22963 1.01458 0.97024 1.00609 0.93145 0.92285 0.91727 0.92816 0.92544 0.91949 0.94023 0.93317 0.78037 0.84107 0.92231 0.96833 0.96946 0.95691 0.93033 0.88822 0.86337 0.90727 0.90229 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.14 37.16 0.30 -1.56 16 2 C -0.07 -0.84 0.37 -154.51 -0.06 -0.89 16 3 C -0.13 -1.65 7.90 37.15 0.29 -1.36 16 4 C 0.09 0.93 5.66 37.16 0.21 1.14 16 5 O -0.57 -5.89 12.31 -35.23 -0.43 -6.32 16 6 C 0.13 1.80 1.78 -67.71 -0.12 1.68 16 7 H 0.05 0.77 7.63 -51.93 -0.40 0.38 16 8 N -0.68 -11.63 4.11 -106.73 -0.44 -12.07 16 9 C 0.06 1.33 5.21 -3.83 -0.02 1.31 16 10 C 0.03 0.73 5.28 -27.88 -0.15 0.58 16 11 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 15 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 C -0.15 -2.06 4.26 -90.62 -0.39 -2.45 16 20 C -0.16 -2.27 9.71 -26.69 -0.26 -2.53 16 21 C -0.18 -2.69 10.07 -26.69 -0.27 -2.95 16 22 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 23 H 0.06 0.81 6.37 -51.93 -0.33 0.48 16 24 H 0.06 0.83 7.68 -51.93 -0.40 0.43 16 25 H 0.05 0.68 7.68 -51.92 -0.40 0.28 16 26 H 0.06 0.71 7.08 -51.93 -0.37 0.34 16 27 H 0.06 0.85 7.00 -51.93 -0.36 0.49 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.48 6.17 -51.93 -0.32 0.16 16 30 H 0.37 2.15 9.12 45.56 0.42 2.57 16 31 H 0.34 5.76 5.40 -39.29 -0.21 5.55 16 32 H 0.06 1.24 5.99 -51.93 -0.31 0.93 16 33 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.09 1.11 6.12 -51.93 -0.32 0.80 16 38 H 0.12 2.03 6.99 -51.93 -0.36 1.67 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.10 1.68 5.94 -51.93 -0.31 1.37 16 LS Contribution 315.72 15.07 4.76 4.76 Total: -1.00 -30.30 315.72 -7.44 -37.74 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.17 Total: 5.93 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -0.86 Total: -20.55 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.30 Total: -38.32 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.43 Total: -6.32 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.30 -7.44 -37.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339731222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.754 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds