Wall clock time and date at job start Sun Mar 29 2020 22:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47391 * 2 1 4 4 C 1.53001 * 109.47333 * 120.00034 * 2 1 3 5 5 H 1.09008 * 109.10097 * 60.87448 * 4 2 1 6 6 C 1.46258 * 109.11289 * 179.97438 * 4 2 1 7 7 N 1.47805 * 112.31233 * 179.97438 * 6 4 2 8 8 C 1.46903 * 111.00118 * 155.84908 * 7 6 4 9 9 C 1.53003 * 109.46720 * 65.26648 * 8 7 6 10 10 C 1.50700 * 109.46944 * 181.77422 * 9 8 7 11 11 H 1.07999 * 119.99915 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99967 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99995 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99790 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46806 * 90.00348 * 14 12 10 16 16 H 1.48498 * 109.46926 * 209.99847 * 14 12 10 17 17 H 1.48496 * 109.47389 * 330.00434 * 14 12 10 18 18 C 1.44015 * 109.44990 * 278.71571 * 7 6 4 19 19 C 1.54622 * 112.48298 * 94.31207 * 18 7 6 20 20 C 1.54573 * 110.90362 * 319.60947 * 19 18 7 21 21 O 1.39911 * 113.22388 * 319.28289 * 20 19 18 22 22 H 1.09006 * 109.46937 * 299.99864 * 1 2 3 23 23 H 1.09003 * 109.47126 * 59.99566 * 1 2 3 24 24 H 1.09000 * 109.47696 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47360 * 239.99807 * 2 1 3 26 26 H 1.09001 * 109.47438 * 60.00191 * 3 2 1 27 27 H 1.09002 * 109.47715 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47339 * 300.00303 * 3 2 1 29 29 H 1.08997 * 108.91335 * 59.23940 * 6 4 2 30 30 H 1.08997 * 108.91713 * 300.68744 * 6 4 2 31 31 H 1.08992 * 109.47051 * 305.26722 * 8 7 6 32 32 H 1.09002 * 109.47341 * 185.26232 * 8 7 6 33 33 H 1.09000 * 109.46816 * 301.77133 * 9 8 7 34 34 H 1.09000 * 109.47124 * 61.77141 * 9 8 7 35 35 H 0.97004 * 119.99893 * 179.97438 * 13 12 10 36 36 H 1.09000 * 108.87857 * 215.08188 * 18 7 6 37 37 H 1.08995 * 108.88017 * 333.53656 * 18 7 6 38 38 H 1.09002 * 109.18836 * 199.24484 * 19 18 7 39 39 H 1.08995 * 109.15439 * 79.94869 * 19 18 7 40 40 H 1.08998 * 108.73346 * 198.32334 * 20 19 18 41 41 H 1.08996 * 108.64260 * 80.18674 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6862 -1.7522 1.2353 6 6 3.5025 -0.7172 1.2410 7 7 4.0723 -1.3986 2.4223 8 6 5.4297 -1.8869 2.1448 9 6 6.3609 -0.6966 1.9059 10 6 7.7436 -1.1984 1.5783 11 1 7.9388 -2.2601 1.5442 12 6 8.7595 -0.3021 1.3219 13 7 8.5217 0.9907 1.3629 14 14 10.4736 -0.9242 0.9165 15 1 10.5996 -1.1062 -0.5520 16 1 11.4811 0.0628 1.3811 17 1 10.7026 -2.2236 1.5978 18 6 4.0678 -0.4964 3.5449 19 6 2.8106 -0.6599 4.4299 20 6 1.5491 -0.8721 3.5622 21 8 1.5194 -0.0593 2.4238 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 3.8529 0.3148 1.2251 30 1 3.8522 -1.2211 0.3400 31 1 5.4138 -2.5196 1.2574 32 1 5.7894 -2.4644 2.9964 33 1 5.9838 -0.1015 1.0742 34 1 6.4012 -0.0808 2.8044 35 1 9.2365 1.6212 1.1829 36 1 4.9534 -0.6844 4.1520 37 1 4.1075 0.5279 3.1743 38 1 2.6811 0.2358 5.0374 39 1 2.9438 -1.5209 5.0849 40 1 0.6680 -0.6589 4.1674 41 1 1.5133 -1.9153 3.2486 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339824864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:55 Heat of formation + Delta-G solvation = -58.400030 kcal Electronic energy + Delta-G solvation = -18644.395704 eV Core-core repulsion = 15944.756463 eV Total energy + Delta-G solvation = -2699.639241 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.78691 -36.57567 -35.30341 -33.00728 -31.47028 -29.96454 -27.60215 -26.89948 -25.65700 -24.07269 -22.22882 -21.19445 -19.81271 -19.09725 -16.66389 -16.26831 -15.68934 -15.36581 -14.82438 -14.50149 -14.01740 -13.78815 -13.53166 -13.09861 -12.86743 -12.50458 -12.21216 -12.10676 -11.83230 -11.65908 -11.35037 -11.08296 -10.97894 -10.83842 -10.76362 -10.65691 -10.39006 -10.21835 -9.99345 -9.88356 -9.71795 -9.23941 -9.14715 -8.38129 -7.57395 -6.03565 -4.06937 3.29300 3.35762 3.39086 4.02684 4.37678 4.46764 5.02103 5.08199 5.18366 5.31649 5.33861 5.38482 5.53533 5.57040 5.72617 5.77710 5.80923 5.83714 5.98204 6.00083 6.05812 6.08232 6.17557 6.27692 6.30019 6.35606 6.40701 6.46239 6.53616 6.59828 6.70833 6.87793 7.47379 7.54177 7.59579 7.70063 7.85977 7.98009 8.39334 9.00200 9.57551 11.07372 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029779 B = 0.005932 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.030473 B = 4719.129114 C = 5221.601593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 C -0.148 4.148 4 C 0.103 3.897 5 H 0.060 0.940 6 C 0.022 3.978 7 N -0.537 5.537 8 C 0.059 3.941 9 C -0.008 4.008 10 C -0.521 4.521 11 H 0.056 0.944 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.892 3.108 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C 0.058 3.942 19 C -0.140 4.140 20 C 0.073 3.927 21 O -0.368 6.368 22 H 0.062 0.938 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.016 0.984 34 H 0.017 0.983 35 H 0.260 0.740 36 H 0.065 0.935 37 H 0.041 0.959 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.934 -2.365 0.543 15.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 C -0.205 4.205 4 C 0.046 3.954 5 H 0.078 0.922 6 C -0.106 4.106 7 N -0.259 5.259 8 C -0.068 4.068 9 C -0.046 4.046 10 C -0.560 4.560 11 H 0.074 0.926 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.720 3.280 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.071 4.071 19 C -0.179 4.179 20 C -0.005 4.005 21 O -0.287 6.287 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.034 0.966 34 H 0.036 0.964 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.209 -2.433 0.644 15.416 hybrid contribution 1.814 0.211 -0.359 1.861 sum -13.395 -2.222 0.285 13.581 Atomic orbital electron populations 1.21743 0.94877 1.01320 1.01839 1.21195 0.96270 0.97290 0.96220 1.21844 1.01600 0.95407 1.01622 1.21210 0.93349 0.95345 0.85502 0.92212 1.21716 0.94919 0.99324 0.94640 1.61814 1.23304 1.36755 1.04052 1.22444 0.85330 0.98694 1.00333 1.19696 0.94287 0.93468 0.97159 1.21165 0.94401 0.92882 1.47530 0.92615 1.25023 0.99033 0.94854 0.95427 1.69968 1.32873 1.00990 1.49528 0.86594 0.84169 0.78638 0.78617 1.20649 1.21220 1.19829 1.21769 0.96835 0.95280 0.93210 1.22711 0.95735 1.01284 0.98134 1.22047 0.96331 0.94710 0.87374 1.87683 1.82859 1.41153 1.17006 0.91868 0.93083 0.93208 0.90325 0.91922 0.92066 0.93211 0.92614 0.90693 0.92056 0.91921 0.96561 0.96439 0.92991 0.91604 0.94026 0.92104 0.91657 0.91589 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.03 37.15 0.34 -1.19 16 2 C -0.09 -1.14 2.77 -90.62 -0.25 -1.39 16 3 C -0.15 -1.97 8.66 37.15 0.32 -1.65 16 4 C 0.10 1.50 2.06 -29.94 -0.06 1.44 16 5 H 0.06 0.84 7.46 -51.92 -0.39 0.46 16 6 C 0.02 0.38 3.19 -6.53 -0.02 0.36 16 7 N -0.54 -9.83 4.48 -239.17 -1.07 -10.91 16 8 C 0.06 1.23 5.01 -3.82 -0.02 1.21 16 9 C -0.01 -0.20 4.42 -27.88 -0.12 -0.33 16 10 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 11 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 14 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 C 0.06 1.05 4.14 -4.51 -0.02 1.03 16 19 C -0.14 -2.02 6.52 -25.05 -0.16 -2.18 16 20 C 0.07 1.00 6.20 37.98 0.24 1.24 16 21 O -0.37 -5.54 8.64 -32.69 -0.28 -5.83 16 22 H 0.06 0.73 7.61 -51.93 -0.40 0.34 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.88 7.71 -51.93 -0.40 0.48 16 27 H 0.06 0.92 6.39 -51.93 -0.33 0.59 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.07 4.85 -51.93 -0.25 0.82 16 30 H 0.07 1.30 7.70 -51.93 -0.40 0.90 16 31 H 0.06 1.27 7.92 -51.93 -0.41 0.86 16 32 H 0.06 1.31 8.11 -51.93 -0.42 0.89 16 33 H 0.02 0.44 7.01 -51.93 -0.36 0.08 16 34 H 0.02 0.48 6.80 -51.93 -0.35 0.13 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.07 1.26 6.94 -51.93 -0.36 0.90 16 37 H 0.04 0.82 7.11 -51.93 -0.37 0.45 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.68 7.24 -51.93 -0.38 0.31 16 LS Contribution 309.72 15.07 4.67 4.67 Total: -1.00 -29.59 309.72 -8.47 -38.06 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -7.32 Total: -1.50 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -0.18 Total: -14.92 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.34 Total: -37.12 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.28 Total: -5.83 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.59 -8.47 -38.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339824864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.340 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds