Wall clock time and date at job start Sun Mar 29 2020 22:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47391 * 2 1 4 4 C 1.53001 * 109.47333 * 120.00034 * 2 1 3 5 5 H 1.09008 * 109.10097 * 60.87448 * 4 2 1 6 6 C 1.46258 * 109.11289 * 179.97438 * 4 2 1 7 7 N 1.47805 * 112.31233 * 179.97438 * 6 4 2 8 8 C 1.46903 * 111.00118 * 155.84908 * 7 6 4 9 9 C 1.53003 * 109.46720 * 65.26648 * 8 7 6 10 10 C 1.50700 * 109.46944 * 181.77422 * 9 8 7 11 11 H 1.07999 * 119.99915 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99967 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99995 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99790 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46806 * 90.00348 * 14 12 10 16 16 H 1.48498 * 109.46926 * 209.99847 * 14 12 10 17 17 H 1.48496 * 109.47389 * 330.00434 * 14 12 10 18 18 C 1.44015 * 109.44990 * 278.71571 * 7 6 4 19 19 C 1.54622 * 112.48298 * 94.31207 * 18 7 6 20 20 C 1.54573 * 110.90362 * 319.60947 * 19 18 7 21 21 O 1.39911 * 113.22388 * 319.28289 * 20 19 18 22 22 H 1.09006 * 109.46937 * 299.99864 * 1 2 3 23 23 H 1.09003 * 109.47126 * 59.99566 * 1 2 3 24 24 H 1.09000 * 109.47696 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47360 * 239.99807 * 2 1 3 26 26 H 1.09001 * 109.47438 * 60.00191 * 3 2 1 27 27 H 1.09002 * 109.47715 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47339 * 300.00303 * 3 2 1 29 29 H 1.08997 * 108.91335 * 59.23940 * 6 4 2 30 30 H 1.08997 * 108.91713 * 300.68744 * 6 4 2 31 31 H 1.08992 * 109.47051 * 305.26722 * 8 7 6 32 32 H 1.09002 * 109.47341 * 185.26232 * 8 7 6 33 33 H 1.09000 * 109.46816 * 301.77133 * 9 8 7 34 34 H 1.09000 * 109.47124 * 61.77141 * 9 8 7 35 35 H 0.97004 * 119.99893 * 179.97438 * 13 12 10 36 36 H 1.09000 * 108.87857 * 215.08188 * 18 7 6 37 37 H 1.08995 * 108.88017 * 333.53656 * 18 7 6 38 38 H 1.09002 * 109.18836 * 199.24484 * 19 18 7 39 39 H 1.08995 * 109.15439 * 79.94869 * 19 18 7 40 40 H 1.08998 * 108.73346 * 198.32334 * 20 19 18 41 41 H 1.08996 * 108.64260 * 80.18674 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6862 -1.7522 1.2353 6 6 3.5025 -0.7172 1.2410 7 7 4.0723 -1.3986 2.4223 8 6 5.4297 -1.8869 2.1448 9 6 6.3609 -0.6966 1.9059 10 6 7.7436 -1.1984 1.5783 11 1 7.9388 -2.2601 1.5442 12 6 8.7595 -0.3021 1.3219 13 7 8.5217 0.9907 1.3629 14 14 10.4736 -0.9242 0.9165 15 1 10.5996 -1.1062 -0.5520 16 1 11.4811 0.0628 1.3811 17 1 10.7026 -2.2236 1.5978 18 6 4.0678 -0.4964 3.5449 19 6 2.8106 -0.6599 4.4299 20 6 1.5491 -0.8721 3.5622 21 8 1.5194 -0.0593 2.4238 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 3.8529 0.3148 1.2251 30 1 3.8522 -1.2211 0.3400 31 1 5.4138 -2.5196 1.2574 32 1 5.7894 -2.4644 2.9964 33 1 5.9838 -0.1015 1.0742 34 1 6.4012 -0.0808 2.8044 35 1 9.2365 1.6212 1.1829 36 1 4.9534 -0.6844 4.1520 37 1 4.1075 0.5279 3.1743 38 1 2.6811 0.2358 5.0374 39 1 2.9438 -1.5209 5.0849 40 1 0.6680 -0.6589 4.1674 41 1 1.5133 -1.9153 3.2486 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339824864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:55 Heat of formation + Delta-G solvation = -76.894627 kcal Electronic energy + Delta-G solvation = -18645.197690 eV Core-core repulsion = 15944.756463 eV Total energy + Delta-G solvation = -2700.441227 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.08436 -38.06005 -36.40259 -35.10825 -32.80300 -31.68631 -29.11439 -27.96874 -27.10165 -25.82591 -23.83802 -22.58875 -20.95535 -20.61639 -18.67311 -17.61434 -17.05272 -16.79686 -16.50977 -16.04037 -15.27672 -15.12328 -14.93607 -14.54628 -14.31869 -14.02146 -13.80325 -13.41258 -13.31347 -12.95103 -12.87240 -12.81132 -12.49877 -12.26799 -12.16826 -11.95755 -11.82270 -11.71687 -11.51737 -11.39567 -11.22225 -11.19318 -10.60722 -10.38864 -9.22736 -8.24042 -6.37076 1.37324 1.38628 1.50024 2.37089 2.89614 2.98670 3.08544 3.89107 3.91719 4.03856 4.14821 4.18805 4.24825 4.35625 4.42507 4.53095 4.62798 4.65339 4.76918 4.79186 4.86596 4.90922 4.95186 4.99429 5.02058 5.08661 5.09978 5.14189 5.19668 5.26360 5.42064 5.45494 5.51352 5.56097 5.70157 5.97578 6.19274 6.30218 6.46235 6.80533 7.32937 8.86955 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029779 B = 0.005932 C = 0.005361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.030473 B = 4719.129114 C = 5221.601593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 C -0.144 4.144 4 C 0.107 3.893 5 H 0.073 0.927 6 C 0.027 3.973 7 N -0.524 5.524 8 C 0.072 3.928 9 C 0.004 3.996 10 C -0.543 4.543 11 H 0.064 0.936 12 C 0.001 3.999 13 N -0.934 5.934 14 Si 0.967 3.033 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.261 1.261 18 C 0.060 3.940 19 C -0.133 4.133 20 C 0.069 3.931 21 O -0.378 6.378 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.088 0.912 26 H 0.052 0.948 27 H 0.033 0.967 28 H 0.068 0.932 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.067 0.933 33 H -0.012 1.012 34 H -0.012 1.012 35 H 0.263 0.737 36 H 0.047 0.953 37 H 0.012 0.988 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.923 -3.865 0.342 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.109 4.109 3 C -0.201 4.201 4 C 0.049 3.951 5 H 0.091 0.909 6 C -0.101 4.101 7 N -0.246 5.246 8 C -0.056 4.056 9 C -0.034 4.034 10 C -0.581 4.581 11 H 0.082 0.918 12 C -0.197 4.197 13 N -0.574 5.574 14 Si 0.791 3.209 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.185 1.185 18 C -0.070 4.070 19 C -0.172 4.172 20 C -0.008 4.008 21 O -0.297 6.297 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.106 0.894 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.007 0.993 34 H 0.006 0.994 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.030 0.970 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.219 -3.942 0.451 16.697 hybrid contribution 2.129 0.735 -0.278 2.269 sum -14.090 -3.208 0.173 14.452 Atomic orbital electron populations 1.21678 0.92906 1.02243 1.02196 1.21238 0.97822 0.96254 0.95573 1.21795 0.99768 0.96512 1.02027 1.21204 0.91065 0.96398 0.86384 0.90876 1.21772 0.97054 0.97319 0.93955 1.61960 1.21177 1.36831 1.04619 1.22230 0.85863 0.96738 1.00752 1.19534 0.94862 0.94493 0.94538 1.21620 0.95584 0.93425 1.47496 0.91825 1.26002 1.03751 0.94919 0.95060 1.70116 1.34399 1.02458 1.50470 0.85423 0.78354 0.78399 0.78739 1.19675 1.20871 1.18506 1.21792 0.98437 0.93504 0.93217 1.22691 0.94157 1.02549 0.97761 1.22209 0.96667 0.94844 0.87119 1.87693 1.82562 1.41910 1.17526 0.92609 0.91633 0.91987 0.89376 0.92921 0.94814 0.91348 0.95531 0.91000 0.91332 0.91497 0.99348 0.99393 0.92820 0.93417 0.96963 0.91180 0.89986 0.88813 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.03 71.98 0.65 -1.91 16 2 C -0.09 -2.16 2.77 -10.80 -0.03 -2.19 16 3 C -0.14 -3.86 8.66 71.98 0.62 -3.24 16 4 C 0.11 2.99 2.06 28.52 0.06 3.05 16 5 H 0.07 1.89 7.46 -2.38 -0.02 1.87 16 6 C 0.03 0.94 3.19 84.05 0.27 1.21 16 7 N -0.52 -19.38 4.48 -910.58 -4.08 -23.46 16 8 C 0.07 3.06 5.01 86.30 0.43 3.49 16 9 C 0.00 0.22 4.42 29.85 0.13 0.35 16 10 C -0.54 -31.14 9.11 25.60 0.23 -30.91 16 11 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 12 C 0.00 0.03 5.46 84.66 0.46 0.49 16 13 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 14 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 17 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 18 C 0.06 2.21 4.14 87.39 0.36 2.57 16 19 C -0.13 -3.67 6.52 31.68 0.21 -3.47 16 20 C 0.07 1.73 6.20 72.52 0.45 2.18 16 21 O -0.38 -10.91 8.64 -139.90 -1.21 -12.12 16 22 H 0.05 1.17 7.61 -2.38 -0.02 1.15 16 23 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 25 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 26 H 0.05 1.49 7.71 -2.39 -0.02 1.48 16 27 H 0.03 1.07 6.39 -2.39 -0.02 1.05 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.03 1.09 4.85 -2.39 -0.01 1.08 16 30 H 0.07 2.53 7.70 -2.39 -0.02 2.51 16 31 H 0.07 2.82 7.92 -2.39 -0.02 2.80 16 32 H 0.07 2.79 8.11 -2.39 -0.02 2.77 16 33 H -0.01 -0.69 7.01 -2.39 -0.02 -0.71 16 34 H -0.01 -0.72 6.80 -2.39 -0.02 -0.74 16 35 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 36 H 0.05 1.90 6.94 -2.39 -0.02 1.88 16 37 H 0.01 0.51 7.11 -2.39 -0.02 0.49 16 38 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.05 1.34 7.24 -2.39 -0.02 1.32 16 Total: -1.00 -64.80 309.72 1.84 -62.96 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.97 Total: 11.98 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: 3.85 Total: -28.36 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -3.79 Total: -81.03 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -1.21 Total: -12.12 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -64.80 1.84 -62.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339824864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.932 kcal (2) G-P(sol) polarization free energy of solvation -64.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds