Wall clock time and date at job start Sun Mar 29 2020 22:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99747 * 2 1 4 4 C 1.50702 * 109.47171 * 293.96039 * 3 2 1 5 5 H 1.07995 * 120.00199 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99860 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00255 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00022 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47136 * 89.99713 * 8 6 4 10 10 H 1.48502 * 109.47245 * 210.00060 * 8 6 4 11 11 H 1.48501 * 109.47237 * 329.99714 * 8 6 4 12 12 C 1.46896 * 111.00429 * 123.95370 * 2 1 3 13 13 C 1.53787 * 113.60991 * 56.04862 * 12 2 1 14 14 C 1.53784 * 87.07923 * 139.98129 * 13 12 2 15 15 O 1.42894 * 113.61434 * 220.01675 * 14 13 12 16 16 C 1.42903 * 114.00393 * 209.99830 * 15 14 13 17 17 C 1.52998 * 109.46738 * 60.00120 * 16 15 14 18 18 C 1.52997 * 109.47299 * 179.97438 * 16 15 14 19 19 C 1.53001 * 109.46897 * 300.00413 * 16 15 14 20 20 C 1.53779 * 87.08045 * 334.56667 * 14 13 12 21 21 H 1.09000 * 109.46978 * 296.03829 * 1 2 3 22 22 H 1.08997 * 109.47640 * 56.04644 * 1 2 3 23 23 H 1.09007 * 109.46955 * 176.04462 * 1 2 3 24 24 H 1.09000 * 109.47142 * 53.95388 * 3 2 1 25 25 H 1.08996 * 109.47521 * 173.95345 * 3 2 1 26 26 H 0.96999 * 120.00064 * 180.02562 * 7 6 4 27 27 H 1.09000 * 112.91010 * 284.79781 * 12 2 1 28 28 H 1.09004 * 113.61202 * 254.52882 * 13 12 2 29 29 H 1.08994 * 113.61447 * 25.43314 * 13 12 2 30 30 H 1.09002 * 113.61478 * 89.11632 * 14 13 12 31 31 H 1.09000 * 109.47187 * 59.99924 * 17 16 15 32 32 H 1.08994 * 109.47098 * 180.02562 * 17 16 15 33 33 H 1.09001 * 109.47331 * 299.99947 * 17 16 15 34 34 H 1.08997 * 109.46909 * 60.00160 * 18 16 15 35 35 H 1.09006 * 109.47057 * 180.02562 * 18 16 15 36 36 H 1.09000 * 109.47072 * 300.00349 * 18 16 15 37 37 H 1.08995 * 109.47503 * 59.99486 * 19 16 15 38 38 H 1.09006 * 109.46825 * 179.97438 * 19 16 15 39 39 H 1.08993 * 109.46740 * 299.99375 * 19 16 15 40 40 H 1.09006 * 113.61307 * 270.88660 * 20 14 13 41 41 H 1.09007 * 113.61642 * 139.98417 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6367 2.0472 -1.2984 5 1 1.0744 1.5114 -2.0487 6 6 2.0274 3.3493 -1.5288 7 7 2.7126 4.0017 -0.6153 8 14 1.5835 4.1867 -3.1384 9 1 0.2714 4.8674 -2.9968 10 1 2.6261 5.1874 -3.4799 11 1 1.5000 3.1708 -4.2184 12 6 1.9955 -0.7659 1.1375 13 6 1.4816 -2.2142 1.1956 14 6 2.9045 -2.6191 1.6156 15 8 3.3544 -3.8352 1.0151 16 6 4.2791 -4.5723 1.8174 17 6 3.6184 -4.9427 3.1468 18 6 4.6901 -5.8482 1.0799 19 6 5.5181 -3.7155 2.0849 20 6 3.3940 -1.3553 0.8889 21 1 -0.3633 0.4511 0.9234 22 1 -0.3634 0.5739 -0.8524 23 1 -0.3633 -1.0253 -0.0709 24 1 1.5610 1.9274 0.8309 25 1 3.0796 1.3446 0.1082 26 1 2.9872 4.9178 -0.7773 27 1 1.9082 -0.2333 2.0845 28 1 0.7334 -2.3813 1.9705 29 1 1.1833 -2.6109 0.2252 30 1 3.0657 -2.5931 2.6933 31 1 2.7357 -5.5530 2.9563 32 1 4.3238 -5.5045 3.7590 33 1 3.3253 -4.0339 3.6725 34 1 5.1606 -5.5847 0.1327 35 1 5.3951 -6.4107 1.6921 36 1 3.8071 -6.4584 0.8897 37 1 5.2250 -2.8068 2.6105 38 1 6.2233 -4.2776 2.6973 39 1 5.9887 -3.4517 1.1379 40 1 3.6184 -1.5173 -0.1655 41 1 4.1897 -0.8290 1.4161 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341630878.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:13 Heat of formation + Delta-G solvation = -30.998487 kcal Electronic energy + Delta-G solvation = -18015.424986 eV Core-core repulsion = 15316.973965 eV Total energy + Delta-G solvation = -2698.451021 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.68948 -37.61644 -34.62894 -32.72491 -31.96230 -27.63762 -27.52937 -27.23799 -25.73728 -24.64762 -23.05173 -20.88900 -19.70480 -18.89930 -16.69470 -16.29472 -15.49417 -15.05861 -14.83299 -14.48511 -13.82410 -13.70299 -13.35811 -12.95832 -12.89998 -12.40648 -12.06900 -12.02760 -11.92826 -11.85834 -11.81889 -11.37631 -11.20250 -10.96061 -10.89257 -10.80375 -10.52659 -10.35546 -10.28114 -9.98632 -9.66606 -9.17845 -9.08642 -8.40009 -7.18563 -5.99053 -3.99931 3.34215 3.40217 3.45204 3.77578 4.46400 4.72742 4.75922 4.94181 4.98566 5.09109 5.11005 5.18169 5.33146 5.36785 5.40955 5.46765 5.60371 5.64594 5.72445 5.77543 5.82128 5.95344 6.03817 6.17690 6.19186 6.20826 6.27250 6.35736 6.42276 6.62877 6.69990 6.83098 7.37297 7.39011 7.55000 7.86129 8.15837 8.26625 8.62027 9.08110 9.64085 11.11989 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.040580 B = 0.004600 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.825141 B = 6085.399565 C = 6296.441632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.526 5.526 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.057 3.943 13 C -0.125 4.125 14 C 0.060 3.940 15 O -0.360 6.360 16 C 0.104 3.896 17 C -0.178 4.178 18 C -0.137 4.137 19 C -0.176 4.176 20 C -0.133 4.133 21 H 0.008 0.992 22 H 0.073 0.927 23 H 0.046 0.954 24 H -0.011 1.011 25 H 0.030 0.970 26 H 0.260 0.740 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.369 -16.637 7.387 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.251 5.251 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.052 4.052 13 C -0.163 4.163 14 C 0.002 3.998 15 O -0.279 6.279 16 C 0.064 3.936 17 C -0.235 4.235 18 C -0.194 4.194 19 C -0.233 4.233 20 C -0.171 4.171 21 H 0.027 0.973 22 H 0.092 0.908 23 H 0.065 0.935 24 H 0.006 0.994 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.115 0.885 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.556 -16.750 6.804 18.259 hybrid contribution -0.341 1.206 0.279 1.284 sum 2.215 -15.544 7.083 17.224 Atomic orbital electron populations 1.22174 0.89019 0.99543 1.00311 1.62315 1.06715 1.17771 1.38300 1.19706 0.95499 0.81600 0.96430 1.21184 1.34603 0.96884 1.01751 0.91867 1.24987 0.95327 0.97370 0.96961 1.69964 1.38512 1.11377 1.34131 0.86510 0.77942 0.79223 0.83828 1.20786 1.21283 1.19747 1.22734 0.96139 0.92719 0.93630 1.23283 0.94955 0.95768 1.02293 1.23577 0.95878 0.83899 0.96491 1.88051 1.61358 1.34610 1.43871 1.21464 0.89154 0.92124 0.90830 1.22459 1.01453 1.02072 0.97509 1.21744 1.01517 0.95395 1.00747 1.22461 0.97996 1.00281 1.02591 1.23466 0.96582 0.94717 1.02353 0.97327 0.90813 0.93548 0.99358 0.95177 0.93001 0.92854 0.92095 0.88620 0.89877 0.91839 0.91844 0.92168 0.91774 0.91534 0.91991 0.92112 0.92080 0.91576 0.88466 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 9.14 60.07 0.55 1.32 16 2 N -0.53 -11.74 4.71 -235.35 -1.11 -12.85 16 3 C 0.19 5.16 4.69 -4.97 -0.02 5.13 16 4 C -0.51 -14.50 8.46 -34.44 -0.29 -14.79 16 5 H 0.06 1.80 7.12 -52.49 -0.37 1.42 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 8 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 12 C 0.06 1.06 3.20 -66.90 -0.21 0.85 16 13 C -0.13 -1.94 6.44 -25.91 -0.17 -2.11 16 14 C 0.06 0.86 2.82 -25.92 -0.07 0.79 16 15 O -0.36 -5.21 10.00 -35.23 -0.35 -5.56 16 16 C 0.10 1.16 1.11 -90.62 -0.10 1.06 16 17 C -0.18 -1.71 8.38 37.16 0.31 -1.39 16 18 C -0.14 -1.32 8.84 37.16 0.33 -0.99 16 19 C -0.18 -1.87 8.39 37.16 0.31 -1.56 16 20 C -0.13 -2.29 7.49 -25.92 -0.19 -2.48 16 21 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 22 H 0.07 1.58 6.76 -51.93 -0.35 1.23 16 23 H 0.05 0.80 7.05 -51.92 -0.37 0.44 16 24 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 25 H 0.03 0.86 7.91 -51.93 -0.41 0.45 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.10 1.59 7.89 -51.93 -0.41 1.18 16 30 H 0.08 1.07 5.55 -51.93 -0.29 0.78 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.59 6.25 -51.93 -0.32 0.26 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.68 7.02 -51.93 -0.36 0.31 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 322.94 15.07 4.87 4.87 Total: -1.00 -30.46 322.94 -8.06 -38.52 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -7.52 Total: -2.78 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 0.34 Total: -12.71 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: -0.37 Total: -39.26 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.35 Total: -5.56 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.46 -8.06 -38.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341630878.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.517 kcal (2) G-P(sol) polarization free energy of solvation -30.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds