Wall clock time and date at job start Sun Mar 29 2020 22:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99747 * 2 1 4 4 C 1.50702 * 109.47171 * 293.96039 * 3 2 1 5 5 H 1.07995 * 120.00199 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99860 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00255 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00022 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47136 * 89.99713 * 8 6 4 10 10 H 1.48502 * 109.47245 * 210.00060 * 8 6 4 11 11 H 1.48501 * 109.47237 * 329.99714 * 8 6 4 12 12 C 1.46896 * 111.00429 * 123.95370 * 2 1 3 13 13 C 1.53787 * 113.60991 * 56.04862 * 12 2 1 14 14 C 1.53784 * 87.07923 * 139.98129 * 13 12 2 15 15 O 1.42894 * 113.61434 * 220.01675 * 14 13 12 16 16 C 1.42903 * 114.00393 * 209.99830 * 15 14 13 17 17 C 1.52998 * 109.46738 * 60.00120 * 16 15 14 18 18 C 1.52997 * 109.47299 * 179.97438 * 16 15 14 19 19 C 1.53001 * 109.46897 * 300.00413 * 16 15 14 20 20 C 1.53779 * 87.08045 * 334.56667 * 14 13 12 21 21 H 1.09000 * 109.46978 * 296.03829 * 1 2 3 22 22 H 1.08997 * 109.47640 * 56.04644 * 1 2 3 23 23 H 1.09007 * 109.46955 * 176.04462 * 1 2 3 24 24 H 1.09000 * 109.47142 * 53.95388 * 3 2 1 25 25 H 1.08996 * 109.47521 * 173.95345 * 3 2 1 26 26 H 0.96999 * 120.00064 * 180.02562 * 7 6 4 27 27 H 1.09000 * 112.91010 * 284.79781 * 12 2 1 28 28 H 1.09004 * 113.61202 * 254.52882 * 13 12 2 29 29 H 1.08994 * 113.61447 * 25.43314 * 13 12 2 30 30 H 1.09002 * 113.61478 * 89.11632 * 14 13 12 31 31 H 1.09000 * 109.47187 * 59.99924 * 17 16 15 32 32 H 1.08994 * 109.47098 * 180.02562 * 17 16 15 33 33 H 1.09001 * 109.47331 * 299.99947 * 17 16 15 34 34 H 1.08997 * 109.46909 * 60.00160 * 18 16 15 35 35 H 1.09006 * 109.47057 * 180.02562 * 18 16 15 36 36 H 1.09000 * 109.47072 * 300.00349 * 18 16 15 37 37 H 1.08995 * 109.47503 * 59.99486 * 19 16 15 38 38 H 1.09006 * 109.46825 * 179.97438 * 19 16 15 39 39 H 1.08993 * 109.46740 * 299.99375 * 19 16 15 40 40 H 1.09006 * 113.61307 * 270.88660 * 20 14 13 41 41 H 1.09007 * 113.61642 * 139.98417 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6367 2.0472 -1.2984 5 1 1.0744 1.5114 -2.0487 6 6 2.0274 3.3493 -1.5288 7 7 2.7126 4.0017 -0.6153 8 14 1.5835 4.1867 -3.1384 9 1 0.2714 4.8674 -2.9968 10 1 2.6261 5.1874 -3.4799 11 1 1.5000 3.1708 -4.2184 12 6 1.9955 -0.7659 1.1375 13 6 1.4816 -2.2142 1.1956 14 6 2.9045 -2.6191 1.6156 15 8 3.3544 -3.8352 1.0151 16 6 4.2791 -4.5723 1.8174 17 6 3.6184 -4.9427 3.1468 18 6 4.6901 -5.8482 1.0799 19 6 5.5181 -3.7155 2.0849 20 6 3.3940 -1.3553 0.8889 21 1 -0.3633 0.4511 0.9234 22 1 -0.3634 0.5739 -0.8524 23 1 -0.3633 -1.0253 -0.0709 24 1 1.5610 1.9274 0.8309 25 1 3.0796 1.3446 0.1082 26 1 2.9872 4.9178 -0.7773 27 1 1.9082 -0.2333 2.0845 28 1 0.7334 -2.3813 1.9705 29 1 1.1833 -2.6109 0.2252 30 1 3.0657 -2.5931 2.6933 31 1 2.7357 -5.5530 2.9563 32 1 4.3238 -5.5045 3.7590 33 1 3.3253 -4.0339 3.6725 34 1 5.1606 -5.5847 0.1327 35 1 5.3951 -6.4107 1.6921 36 1 3.8071 -6.4584 0.8897 37 1 5.2250 -2.8068 2.6105 38 1 6.2233 -4.2776 2.6973 39 1 5.9887 -3.4517 1.1379 40 1 3.6184 -1.5173 -0.1655 41 1 4.1897 -0.8290 1.4161 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341630878.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:12 Heat of formation + Delta-G solvation = -50.324518 kcal Electronic energy + Delta-G solvation = -18016.263025 eV Core-core repulsion = 15316.973965 eV Total energy + Delta-G solvation = -2699.289061 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.90492 -38.89328 -36.26179 -34.44064 -33.41980 -29.36107 -28.38628 -28.27372 -27.37438 -26.05783 -24.76844 -22.53492 -20.72870 -20.34761 -18.49347 -17.71438 -16.90311 -16.64123 -16.15321 -15.89681 -15.27775 -15.03525 -14.82763 -14.30102 -14.11892 -13.81707 -13.36542 -13.25946 -13.11856 -12.98261 -12.80163 -12.75749 -12.66949 -12.58989 -12.34698 -12.26942 -12.17337 -11.96637 -11.79382 -11.27532 -11.18496 -11.10430 -10.62186 -10.29159 -9.01081 -8.20913 -6.31126 1.40236 1.42038 1.53857 2.39955 2.74760 3.11545 3.46927 3.63639 3.73936 3.91279 3.94063 4.00300 4.06294 4.17265 4.36585 4.52581 4.68531 4.70322 4.71860 4.78002 4.84414 4.89089 4.90086 4.97634 4.98617 5.04670 5.07141 5.14561 5.17894 5.24690 5.34221 5.35276 5.40111 5.45477 5.67205 6.07371 6.34196 6.50614 6.69030 6.85497 7.38728 8.90410 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.040580 B = 0.004600 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.825141 B = 6085.399565 C = 6296.441632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.537 5.537 3 C 0.210 3.790 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.266 1.266 12 C 0.044 3.956 13 C -0.112 4.112 14 C 0.081 3.919 15 O -0.379 6.379 16 C 0.092 3.908 17 C -0.174 4.174 18 C -0.136 4.136 19 C -0.175 4.175 20 C -0.138 4.138 21 H 0.010 0.990 22 H 0.055 0.945 23 H 0.079 0.921 24 H -0.041 1.041 25 H 0.002 0.998 26 H 0.264 0.736 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.084 0.916 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.948 -18.160 7.670 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.261 5.261 3 C 0.084 3.916 4 C -0.564 4.564 5 H 0.080 0.920 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.190 1.190 12 C -0.065 4.065 13 C -0.150 4.150 14 C 0.023 3.977 15 O -0.298 6.298 16 C 0.054 3.946 17 C -0.231 4.231 18 C -0.193 4.193 19 C -0.233 4.233 20 C -0.176 4.176 21 H 0.029 0.971 22 H 0.074 0.926 23 H 0.098 0.902 24 H -0.023 1.023 25 H 0.020 0.980 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.123 0.877 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.129 -18.302 7.093 19.744 hybrid contribution -0.158 1.623 0.227 1.646 sum 1.971 -16.679 7.320 18.321 Atomic orbital electron populations 1.22175 0.87616 1.01318 0.99589 1.62232 1.08106 1.15163 1.40612 1.19323 0.93619 0.83863 0.94810 1.21492 1.34868 0.97574 1.02419 0.91973 1.25926 0.94935 0.98022 1.00767 1.70091 1.39360 1.11856 1.36284 0.85370 0.78021 0.78071 0.79086 1.19645 1.20649 1.18991 1.22909 0.97463 0.93930 0.92242 1.23175 0.96340 0.92728 1.02743 1.23348 0.94415 0.82901 0.97077 1.88030 1.62150 1.34408 1.45227 1.21791 0.88817 0.92347 0.91687 1.22429 1.01876 1.02278 0.96551 1.21775 1.02023 0.94837 1.00628 1.22461 0.98319 1.00301 1.02183 1.23450 0.96023 0.96817 1.01324 0.97150 0.92574 0.90228 1.02294 0.98025 0.92681 0.92972 0.89456 0.89524 0.87658 0.91790 0.89755 0.92321 0.92803 0.89077 0.91967 0.92847 0.89738 0.93014 0.90935 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.64 9.14 127.69 1.17 2.81 16 2 N -0.54 -24.38 4.71 -898.50 -4.24 -28.62 16 3 C 0.21 11.70 4.69 85.56 0.40 12.10 16 4 C -0.53 -30.82 8.46 25.60 0.22 -30.61 16 5 H 0.06 3.58 7.12 -2.91 -0.02 3.56 16 6 C 0.00 0.08 5.46 84.65 0.46 0.54 16 7 N -0.94 -57.57 13.29 21.45 0.28 -57.28 16 8 Si 0.97 45.25 29.54 68.60 2.03 47.27 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 12 C 0.04 1.62 3.20 45.44 0.15 1.77 16 13 C -0.11 -3.29 6.44 31.12 0.20 -3.09 16 14 C 0.08 2.23 2.82 31.12 0.09 2.31 16 15 O -0.38 -10.46 10.00 -148.98 -1.49 -11.95 16 16 C 0.09 1.88 1.11 -10.79 -0.01 1.87 16 17 C -0.17 -2.82 8.38 71.98 0.60 -2.22 16 18 C -0.14 -2.33 8.84 71.98 0.64 -1.69 16 19 C -0.18 -3.46 8.39 71.98 0.60 -2.86 16 20 C -0.14 -4.83 7.49 31.12 0.23 -4.59 16 21 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 22 H 0.06 2.41 6.76 -2.39 -0.02 2.40 16 23 H 0.08 2.63 7.05 -2.38 -0.02 2.61 16 24 H -0.04 -2.44 8.12 -2.39 -0.02 -2.46 16 25 H 0.00 0.10 7.91 -2.39 -0.02 0.08 16 26 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.09 2.74 7.89 -2.39 -0.02 2.72 16 30 H 0.11 2.46 5.55 -2.39 -0.01 2.45 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 0.97 6.25 -2.39 -0.01 0.95 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.05 1.12 7.02 -2.39 -0.02 1.10 16 38 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 2.89 8.14 -2.38 -0.02 2.87 16 41 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -66.62 322.94 2.29 -64.33 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.96 Total: 9.91 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 4.75 Total: -23.66 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -3.95 Total: -85.90 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -1.49 Total: -11.95 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -66.62 2.29 -64.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341630878.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.001 kcal (2) G-P(sol) polarization free energy of solvation -66.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds