Wall clock time and date at job start Sun Mar 29 2020 22:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46892 * 2 1 4 4 C 1.52997 * 109.47032 * 120.00210 * 2 1 3 5 5 H 1.08997 * 109.54554 * 59.89145 * 4 2 1 6 6 C 1.53102 * 109.50248 * 180.02562 * 4 2 1 7 7 N 1.47018 * 109.25750 * 176.78223 * 6 4 2 8 8 C 1.46895 * 111.00040 * 177.60522 * 7 6 4 9 9 C 1.53005 * 109.47064 * 170.00180 * 8 7 6 10 10 C 1.52992 * 109.47274 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47257 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99988 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00047 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 10 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47088 * 89.99795 * 15 13 11 17 17 H 1.48495 * 109.47293 * 209.99997 * 15 13 11 18 18 H 1.48507 * 109.47015 * 329.99955 * 15 13 11 19 19 C 1.47016 * 110.75173 * 301.38573 * 7 6 4 20 20 C 1.53091 * 109.25951 * 58.61087 * 19 7 6 21 21 O 1.43013 * 109.26035 * 303.15073 * 20 19 7 22 22 H 1.09005 * 109.47389 * 299.99932 * 1 2 3 23 23 H 1.09003 * 109.47068 * 60.00286 * 1 2 3 24 24 H 1.09004 * 109.47160 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46886 * 240.00175 * 2 1 3 26 26 H 1.09003 * 109.47030 * 299.99737 * 3 2 1 27 27 H 1.08996 * 109.47519 * 60.00171 * 3 2 1 28 28 H 1.09008 * 109.46719 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.51373 * 56.84508 * 6 4 2 30 30 H 1.09003 * 109.53908 * 296.73305 * 6 4 2 31 31 H 1.08999 * 109.47537 * 50.00376 * 8 7 6 32 32 H 1.09000 * 109.47104 * 289.99505 * 8 7 6 33 33 H 1.09004 * 109.47166 * 59.99485 * 9 8 7 34 34 H 1.09005 * 109.46988 * 299.99873 * 9 8 7 35 35 H 1.09004 * 109.47330 * 59.99726 * 10 9 8 36 36 H 1.08997 * 109.47279 * 300.00213 * 10 9 8 37 37 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 38 38 H 1.09004 * 109.50726 * 178.55278 * 19 7 6 39 39 H 1.09009 * 109.50176 * 298.67881 * 19 7 6 40 40 H 1.09003 * 109.50657 * 183.21681 * 20 19 7 41 41 H 1.08997 * 109.50831 * 63.09101 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6757 -1.7486 1.2513 6 6 3.5710 -0.7212 1.2503 7 7 4.0550 -1.3467 2.4895 8 6 5.5222 -1.4181 2.5049 9 6 5.9977 -1.8390 3.8970 10 6 7.5257 -1.9139 3.9129 11 6 7.9941 -2.3278 5.2842 12 1 7.2739 -2.5180 6.0662 13 6 9.3421 -2.4627 5.5407 14 7 10.2189 -2.2355 4.5871 15 14 9.9227 -2.9765 7.2402 16 1 10.0153 -4.4572 7.3050 17 1 11.2583 -2.3849 7.5069 18 1 8.9558 -2.4959 8.2598 19 6 3.5500 -0.6273 3.6679 20 6 2.0193 -0.6282 3.6425 21 8 1.5675 -0.0450 2.4174 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 3.1300 1.4425 -0.0005 29 1 3.9350 0.3047 1.1942 30 1 3.9362 -1.2845 0.3915 31 1 5.9362 -0.4400 2.2599 32 1 5.8581 -2.1494 1.7698 33 1 5.5837 -2.8171 4.1421 34 1 5.6617 -1.1077 4.6322 35 1 7.9401 -0.9360 3.6677 36 1 7.8613 -2.6453 3.1778 37 1 11.1672 -2.3301 4.7677 38 1 3.8994 -1.1223 4.5740 39 1 3.9137 0.4002 3.6505 40 1 1.6410 -0.0472 4.4836 41 1 1.6548 -1.6529 3.7141 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351208221.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:03 Heat of formation + Delta-G solvation = -65.969081 kcal Electronic energy + Delta-G solvation = -17876.426558 eV Core-core repulsion = 15176.459098 eV Total energy + Delta-G solvation = -2699.967460 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.85037 -36.52658 -35.11606 -33.50833 -31.35825 -30.15622 -27.90866 -27.20574 -25.43038 -23.97070 -22.72504 -20.92151 -19.78142 -19.64693 -16.58764 -16.23695 -15.88310 -15.27378 -15.02532 -14.91485 -14.43145 -14.05563 -13.79654 -13.66642 -13.05290 -12.79804 -12.28822 -12.18326 -11.86964 -11.71083 -11.58434 -11.39606 -11.18154 -10.91542 -10.85420 -10.76373 -10.55548 -10.41739 -10.27993 -9.66740 -9.52839 -9.33748 -9.03519 -8.34652 -8.09345 -5.99979 -4.02273 3.32041 3.38099 3.41444 3.75027 4.02248 4.46460 4.69317 4.75544 4.92442 5.11421 5.12917 5.28276 5.33373 5.35844 5.42080 5.53689 5.58346 5.62214 5.72956 5.75412 5.80534 5.88621 5.91719 5.94193 6.00866 6.06750 6.20667 6.26704 6.30445 6.65610 6.74139 7.04571 7.18678 7.31367 7.32346 7.67069 7.81679 7.99933 8.42899 9.04726 9.61728 11.11479 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.054815 B = 0.004013 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.685089 B = 6975.472128 C = 7276.526270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.147 4.147 4 C 0.099 3.901 5 H 0.064 0.936 6 C 0.020 3.980 7 N -0.538 5.538 8 C 0.056 3.944 9 C -0.112 4.112 10 C 0.022 3.978 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.013 3.987 20 C 0.065 3.935 21 O -0.380 6.380 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.013 0.987 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.096 0.904 39 H 0.039 0.961 40 H 0.094 0.906 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.829 4.767 -8.048 20.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 C -0.204 4.204 4 C 0.041 3.959 5 H 0.082 0.918 6 C -0.108 4.108 7 N -0.263 5.263 8 C -0.071 4.071 9 C -0.149 4.149 10 C -0.015 4.015 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.116 4.116 20 C -0.012 4.012 21 O -0.299 6.299 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.098 0.902 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.032 0.968 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.057 0.943 40 H 0.112 0.888 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.936 4.451 -8.075 20.167 hybrid contribution 1.100 0.272 0.899 1.447 sum -16.836 4.723 -7.175 18.901 Atomic orbital electron populations 1.21750 0.94599 1.01643 1.01956 1.21139 0.96547 0.96985 0.95960 1.21836 1.01020 0.95637 1.01878 1.22152 0.92283 0.95702 0.85745 0.91828 1.22856 0.95680 0.98342 0.93917 1.62330 1.11352 1.51340 1.01300 1.22316 0.84453 0.99758 1.00564 1.21786 0.99883 1.00267 0.93001 1.19066 0.88278 0.97072 0.97127 1.21242 0.91724 1.45959 0.96838 0.92703 1.25034 0.96976 0.95531 0.96977 1.69970 1.01536 1.49689 1.32359 0.86589 0.78047 0.78752 0.84594 1.20637 1.21243 1.19882 1.22872 0.95490 0.97454 0.95735 1.22670 0.93250 0.98650 0.86644 1.87920 1.72832 1.55537 1.13657 0.91830 0.92927 0.92939 0.90155 0.93017 0.91850 0.92588 0.93769 0.90157 0.95261 0.90946 0.92536 0.93196 0.96814 0.96528 0.93019 0.88548 0.94257 0.88759 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.05 37.16 0.34 -0.93 16 2 C -0.09 -0.86 2.81 -90.62 -0.25 -1.11 16 3 C -0.15 -1.45 8.70 37.16 0.32 -1.12 16 4 C 0.10 1.18 2.54 -26.68 -0.07 1.12 16 5 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 6 C 0.02 0.27 4.64 -3.71 -0.02 0.26 16 7 N -0.54 -8.41 4.88 -234.30 -1.14 -9.55 16 8 C 0.06 1.00 5.28 -3.82 -0.02 0.98 16 9 C -0.11 -2.33 4.42 -26.73 -0.12 -2.45 16 10 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 11 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 15 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.01 0.18 4.94 -3.71 -0.02 0.17 16 20 C 0.06 0.80 7.01 37.20 0.26 1.06 16 21 O -0.38 -4.94 9.13 -35.23 -0.32 -5.26 16 22 H 0.06 0.63 7.69 -51.93 -0.40 0.23 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.69 7.68 -51.93 -0.40 0.29 16 28 H 0.06 0.58 6.36 -51.92 -0.33 0.25 16 29 H 0.04 0.61 6.27 -51.93 -0.33 0.29 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.03 0.53 8.08 -51.93 -0.42 0.11 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 1.02 6.28 -51.93 -0.33 0.69 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.10 1.46 6.05 -51.93 -0.31 1.14 16 39 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 317.38 15.07 4.78 4.78 Total: -1.00 -30.25 317.38 -8.64 -38.89 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -7.55 Total: -3.95 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -0.13 Total: -15.25 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.41 Total: -36.00 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.32 Total: -5.26 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.25 -8.64 -38.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351208221.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.080 kcal (2) G-P(sol) polarization free energy of solvation -30.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds