Wall clock time and date at job start Sun Mar 29 2020 22:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46892 * 2 1 4 4 C 1.52997 * 109.47032 * 120.00210 * 2 1 3 5 5 H 1.08997 * 109.54554 * 59.89145 * 4 2 1 6 6 C 1.53102 * 109.50248 * 180.02562 * 4 2 1 7 7 N 1.47018 * 109.25750 * 176.78223 * 6 4 2 8 8 C 1.46895 * 111.00040 * 177.60522 * 7 6 4 9 9 C 1.53005 * 109.47064 * 170.00180 * 8 7 6 10 10 C 1.52992 * 109.47274 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47257 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99988 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00047 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 10 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47088 * 89.99795 * 15 13 11 17 17 H 1.48495 * 109.47293 * 209.99997 * 15 13 11 18 18 H 1.48507 * 109.47015 * 329.99955 * 15 13 11 19 19 C 1.47016 * 110.75173 * 301.38573 * 7 6 4 20 20 C 1.53091 * 109.25951 * 58.61087 * 19 7 6 21 21 O 1.43013 * 109.26035 * 303.15073 * 20 19 7 22 22 H 1.09005 * 109.47389 * 299.99932 * 1 2 3 23 23 H 1.09003 * 109.47068 * 60.00286 * 1 2 3 24 24 H 1.09004 * 109.47160 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46886 * 240.00175 * 2 1 3 26 26 H 1.09003 * 109.47030 * 299.99737 * 3 2 1 27 27 H 1.08996 * 109.47519 * 60.00171 * 3 2 1 28 28 H 1.09008 * 109.46719 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.51373 * 56.84508 * 6 4 2 30 30 H 1.09003 * 109.53908 * 296.73305 * 6 4 2 31 31 H 1.08999 * 109.47537 * 50.00376 * 8 7 6 32 32 H 1.09000 * 109.47104 * 289.99505 * 8 7 6 33 33 H 1.09004 * 109.47166 * 59.99485 * 9 8 7 34 34 H 1.09005 * 109.46988 * 299.99873 * 9 8 7 35 35 H 1.09004 * 109.47330 * 59.99726 * 10 9 8 36 36 H 1.08997 * 109.47279 * 300.00213 * 10 9 8 37 37 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 38 38 H 1.09004 * 109.50726 * 178.55278 * 19 7 6 39 39 H 1.09009 * 109.50176 * 298.67881 * 19 7 6 40 40 H 1.09003 * 109.50657 * 183.21681 * 20 19 7 41 41 H 1.08997 * 109.50831 * 63.09101 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6757 -1.7486 1.2513 6 6 3.5710 -0.7212 1.2503 7 7 4.0550 -1.3467 2.4895 8 6 5.5222 -1.4181 2.5049 9 6 5.9977 -1.8390 3.8970 10 6 7.5257 -1.9139 3.9129 11 6 7.9941 -2.3278 5.2842 12 1 7.2739 -2.5180 6.0662 13 6 9.3421 -2.4627 5.5407 14 7 10.2189 -2.2355 4.5871 15 14 9.9227 -2.9765 7.2402 16 1 10.0153 -4.4572 7.3050 17 1 11.2583 -2.3849 7.5069 18 1 8.9558 -2.4959 8.2598 19 6 3.5500 -0.6273 3.6679 20 6 2.0193 -0.6282 3.6425 21 8 1.5675 -0.0450 2.4174 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 3.1300 1.4425 -0.0005 29 1 3.9350 0.3047 1.1942 30 1 3.9362 -1.2845 0.3915 31 1 5.9362 -0.4400 2.2599 32 1 5.8581 -2.1494 1.7698 33 1 5.5837 -2.8171 4.1421 34 1 5.6617 -1.1077 4.6322 35 1 7.9401 -0.9360 3.6677 36 1 7.8613 -2.6453 3.1778 37 1 11.1672 -2.3301 4.7677 38 1 3.8994 -1.1223 4.5740 39 1 3.9137 0.4002 3.6505 40 1 1.6410 -0.0472 4.4836 41 1 1.6548 -1.6529 3.7141 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351208221.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:03 Heat of formation + Delta-G solvation = -84.837223 kcal Electronic energy + Delta-G solvation = -17877.244742 eV Core-core repulsion = 15176.459098 eV Total energy + Delta-G solvation = -2700.785644 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.91426 -37.80364 -36.04568 -35.46111 -33.22275 -31.17486 -29.43348 -28.02013 -27.02399 -25.06534 -24.36554 -22.33301 -21.15851 -20.68289 -18.53126 -17.38673 -17.13375 -16.50472 -16.46406 -16.18009 -15.96237 -15.12013 -15.05644 -14.82261 -14.31592 -14.09411 -13.77131 -13.51388 -13.20704 -13.04117 -12.81405 -12.71117 -12.58456 -12.43178 -12.31865 -11.93748 -11.70523 -11.64054 -11.53180 -11.36677 -11.31790 -11.05135 -10.57755 -10.50072 -9.36518 -8.21753 -6.33102 1.39416 1.40963 1.52063 2.39700 2.74822 2.88164 3.11466 3.74160 3.88436 4.01877 4.08815 4.12779 4.18407 4.24437 4.28430 4.46615 4.57203 4.60253 4.63102 4.72325 4.79324 4.84673 4.89655 4.92018 4.99657 5.05229 5.08100 5.09829 5.19446 5.23543 5.44377 5.48363 5.53352 5.69432 5.82299 5.95102 6.01487 6.23699 6.25312 6.83517 7.36297 8.90298 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.054815 B = 0.004013 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.685089 B = 6975.472128 C = 7276.526270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.086 4.086 3 C -0.144 4.144 4 C 0.101 3.899 5 H 0.064 0.936 6 C 0.020 3.980 7 N -0.542 5.542 8 C 0.067 3.933 9 C -0.095 4.095 10 C 0.026 3.974 11 C -0.543 4.543 12 H 0.060 0.940 13 C -0.002 4.002 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.262 1.262 19 C 0.011 3.989 20 C 0.069 3.931 21 O -0.387 6.387 22 H 0.051 0.949 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.095 0.905 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.039 0.961 30 H 0.089 0.911 31 H 0.022 0.978 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.054 0.946 35 H -0.011 1.011 36 H -0.008 1.008 37 H 0.264 0.736 38 H 0.089 0.911 39 H 0.029 0.971 40 H 0.115 0.885 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.217 4.589 -7.701 21.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.105 4.105 3 C -0.201 4.201 4 C 0.043 3.957 5 H 0.082 0.918 6 C -0.108 4.108 7 N -0.267 5.267 8 C -0.061 4.061 9 C -0.133 4.133 10 C -0.012 4.012 11 C -0.581 4.581 12 H 0.079 0.921 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.791 3.209 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.187 1.187 19 C -0.117 4.117 20 C -0.008 4.008 21 O -0.306 6.306 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.113 0.887 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.040 0.960 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.007 0.993 36 H 0.011 0.989 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.048 0.952 40 H 0.133 0.867 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.349 4.277 -7.733 21.271 hybrid contribution 1.532 0.345 0.747 1.739 sum -17.817 4.622 -6.986 19.688 Atomic orbital electron populations 1.21712 0.93705 1.02020 1.02105 1.21187 0.97244 0.96696 0.95333 1.21806 1.00463 0.95834 1.02007 1.22243 0.90977 0.96116 0.86394 0.91757 1.22956 0.96910 0.97926 0.93036 1.62321 1.09401 1.52188 1.02743 1.22061 0.86350 0.99194 0.98454 1.21526 0.96088 1.00477 0.95163 1.18964 0.91795 0.94727 0.95688 1.21682 0.92384 1.46163 0.97900 0.92144 1.26010 0.97135 0.95313 1.01473 1.70102 1.01991 1.50546 1.34785 0.85423 0.77645 0.78611 0.79235 1.19698 1.20715 1.18660 1.22920 0.97266 0.96549 0.94980 1.22717 0.91355 0.99461 0.87257 1.87929 1.72751 1.55907 1.14045 0.92995 0.91463 0.92457 0.88661 0.91409 0.93191 0.93395 0.94305 0.89278 0.95973 0.91061 0.92593 0.92706 0.99310 0.98912 0.92739 0.89267 0.95227 0.86687 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.05 71.98 0.65 -1.50 16 2 C -0.09 -1.50 2.81 -10.80 -0.03 -1.53 16 3 C -0.14 -2.62 8.70 71.98 0.63 -1.99 16 4 C 0.10 2.24 2.54 30.63 0.08 2.31 16 5 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 6 C 0.02 0.50 4.64 86.31 0.40 0.91 16 7 N -0.54 -16.54 4.88 -895.19 -4.36 -20.91 16 8 C 0.07 2.41 5.28 86.31 0.46 2.87 16 9 C -0.09 -4.00 4.42 30.59 0.14 -3.87 16 10 C 0.03 1.39 4.97 29.85 0.15 1.54 16 11 C -0.54 -31.41 9.11 25.60 0.23 -31.18 16 12 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 13 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 14 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 15 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 18 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 19 C 0.01 0.31 4.94 86.31 0.43 0.74 16 20 C 0.07 1.59 7.01 72.01 0.50 2.10 16 21 O -0.39 -9.45 9.13 -148.98 -1.36 -10.81 16 22 H 0.05 0.93 7.69 -2.38 -0.02 0.91 16 23 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 1.04 7.68 -2.39 -0.02 1.02 16 28 H 0.05 0.94 6.36 -2.38 -0.02 0.92 16 29 H 0.04 1.05 6.27 -2.39 -0.01 1.04 16 30 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.02 0.82 8.08 -2.39 -0.02 0.80 16 32 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 34 H 0.05 2.24 6.28 -2.38 -0.01 2.23 16 35 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 36 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.09 2.64 6.05 -2.38 -0.01 2.62 16 39 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -64.45 317.38 1.64 -62.82 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.96 Total: 8.76 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 4.09 Total: -29.24 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -4.08 Total: -78.16 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -1.36 Total: -10.81 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -64.45 1.64 -62.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351208221.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.022 kcal (2) G-P(sol) polarization free energy of solvation -64.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds