Wall clock time and date at job start Sun Mar 29 2020 22:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46853 * 2 1 4 4 C 1.52992 * 109.47634 * 120.00310 * 2 1 3 5 5 H 1.09003 * 109.50547 * 299.91686 * 4 2 1 6 6 C 1.53097 * 109.51108 * 179.78736 * 4 2 1 7 7 N 1.47015 * 109.26158 * 183.21709 * 6 4 2 8 8 C 1.46900 * 111.00069 * 182.38988 * 7 6 4 9 9 C 1.53005 * 109.47078 * 302.41103 * 8 7 6 10 10 C 1.52994 * 109.47058 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47193 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99843 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00196 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00294 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00099 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47143 * 90.00075 * 15 13 11 17 17 H 1.48504 * 109.46984 * 210.00109 * 15 13 11 18 18 H 1.48503 * 109.47070 * 329.99986 * 15 13 11 19 19 C 1.47016 * 110.75095 * 58.61128 * 7 6 4 20 20 C 1.53096 * 109.25899 * 301.38372 * 19 7 6 21 21 O 1.43013 * 109.50811 * 60.00064 * 4 2 1 22 22 H 1.08997 * 109.47085 * 299.99236 * 1 2 3 23 23 H 1.09001 * 109.47840 * 59.99772 * 1 2 3 24 24 H 1.08999 * 109.47158 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47085 * 240.00764 * 2 1 3 26 26 H 1.09004 * 109.47580 * 300.00137 * 3 2 1 27 27 H 1.09000 * 109.47145 * 60.00502 * 3 2 1 28 28 H 1.09000 * 109.47043 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.51093 * 63.27649 * 6 4 2 30 30 H 1.09010 * 109.50353 * 303.15376 * 6 4 2 31 31 H 1.09002 * 109.46965 * 62.40895 * 8 7 6 32 32 H 1.09000 * 109.47036 * 182.40875 * 8 7 6 33 33 H 1.09001 * 109.46593 * 300.00007 * 9 8 7 34 34 H 1.09000 * 109.46901 * 59.99735 * 9 8 7 35 35 H 1.09002 * 109.46779 * 299.99665 * 10 9 8 36 36 H 1.09000 * 109.47241 * 59.99658 * 10 9 8 37 37 H 0.96997 * 120.00692 * 179.97438 * 14 13 11 38 38 H 1.09004 * 109.50347 * 61.32188 * 19 7 6 39 39 H 1.08998 * 109.50027 * 181.40886 * 19 7 6 40 40 H 1.09003 * 109.50463 * 176.78181 * 20 19 7 41 41 H 1.08996 * 109.50939 * 296.91872 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6783 -0.2070 2.1395 6 6 3.5710 -0.7264 1.2472 7 7 4.0549 -1.4869 2.4086 8 6 5.5222 -1.4685 2.4757 9 6 6.0993 -2.0397 1.1789 10 6 7.6275 -2.0211 1.2491 11 6 8.1959 -2.5843 -0.0279 12 1 7.5334 -2.9213 -0.8114 13 6 9.5617 -2.6683 -0.1965 14 7 10.3686 -2.2565 0.7569 15 14 10.2663 -3.3657 -1.7798 16 1 10.4627 -2.2677 -2.7601 17 1 11.5711 -4.0159 -1.4967 18 1 9.3252 -4.3680 -2.3411 19 6 3.5461 -2.8658 2.3769 20 6 2.0154 -2.8392 2.3676 21 8 1.5639 -2.0698 1.2498 22 1 -0.3633 0.5137 0.8900 23 1 -0.3635 0.5138 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.6766 1.9565 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1299 1.4426 -0.0005 29 1 3.9385 0.2982 1.3043 30 1 3.9323 -1.1927 0.3305 31 1 5.8671 -0.4427 2.6061 32 1 5.8550 -2.0736 3.3191 33 1 5.7543 -3.0654 1.0486 34 1 5.7665 -1.4345 0.3356 35 1 7.9728 -0.9955 1.3796 36 1 7.9599 -2.6265 2.0924 37 1 11.3295 -2.3159 0.6385 38 1 3.9070 -3.3663 1.4784 39 1 3.8961 -3.4031 3.2584 40 1 1.6342 -3.8572 2.2865 41 1 1.6536 -2.3868 3.2909 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351208231.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:05 Heat of formation + Delta-G solvation = -68.451617 kcal Electronic energy + Delta-G solvation = -18072.617457 eV Core-core repulsion = 15372.542347 eV Total energy + Delta-G solvation = -2700.075111 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.82783 -36.52377 -35.29667 -33.42187 -31.20517 -30.12891 -27.98602 -27.01711 -25.20237 -24.02409 -22.69963 -21.06883 -20.21857 -19.33527 -16.57750 -16.40314 -15.97622 -15.26900 -14.73174 -14.63328 -14.17929 -14.08605 -13.85742 -13.58156 -13.10646 -12.78067 -12.28378 -12.22095 -11.92508 -11.80440 -11.43308 -11.22911 -11.15019 -10.90981 -10.85542 -10.80196 -10.65110 -10.56312 -10.24926 -9.63673 -9.47657 -9.43305 -9.19104 -8.36009 -7.92834 -6.00873 -4.03582 3.30679 3.36877 3.40523 3.74302 4.09319 4.45039 4.73703 4.86580 5.04131 5.10608 5.22957 5.29963 5.32761 5.34781 5.41758 5.55184 5.64390 5.66504 5.74089 5.76817 5.82215 5.88624 5.96557 6.01385 6.04531 6.11429 6.23808 6.27626 6.30951 6.56667 6.75120 7.02369 7.20031 7.30409 7.34303 7.64899 7.79294 7.98325 8.41818 9.03218 9.60655 11.10199 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028853 B = 0.004879 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.202611 B = 5737.566225 C = 6089.255358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.148 4.148 4 C 0.100 3.900 5 H 0.062 0.938 6 C 0.019 3.981 7 N -0.538 5.538 8 C 0.052 3.948 9 C -0.145 4.145 10 C 0.025 3.975 11 C -0.521 4.521 12 H 0.052 0.948 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.012 3.988 20 C 0.067 3.933 21 O -0.383 6.383 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.016 0.984 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.169 3.791 2.146 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 C -0.206 4.206 4 C 0.042 3.958 5 H 0.080 0.920 6 C -0.110 4.110 7 N -0.262 5.262 8 C -0.075 4.075 9 C -0.183 4.183 10 C -0.012 4.012 11 C -0.559 4.559 12 H 0.071 0.929 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.116 4.116 20 C -0.010 4.010 21 O -0.302 6.302 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.289 3.963 2.491 18.879 hybrid contribution 1.176 -0.742 -1.350 1.938 sum -17.113 3.221 1.141 17.451 Atomic orbital electron populations 1.21742 0.94657 1.02248 1.01183 1.21089 0.96422 0.95809 0.97486 1.21872 1.01715 0.95015 1.01976 1.22198 0.92532 0.83104 0.97963 0.92023 1.22862 0.95079 0.99616 0.93404 1.62563 1.10957 1.12384 1.40295 1.22347 0.84514 1.01749 0.98872 1.22223 1.00542 0.99432 0.96140 1.19015 0.88041 0.97140 0.97052 1.21249 0.91481 1.41248 1.01910 0.92926 1.25018 0.97267 0.95571 0.96534 1.69959 1.03264 1.47532 1.32735 0.86614 0.78493 0.79264 0.83767 1.20640 1.21160 1.19921 1.22788 0.95641 0.90972 1.02213 1.22623 0.93174 0.95896 0.89323 1.87929 1.72629 1.23183 1.46438 0.92996 0.92912 0.91947 0.90473 0.92197 0.92488 0.91918 0.89763 0.93052 0.90952 0.91013 0.93411 0.93224 0.96607 0.96634 0.92994 0.93230 0.89940 0.88835 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.05 37.16 0.34 -1.04 16 2 C -0.09 -0.99 2.72 -90.62 -0.25 -1.23 16 3 C -0.15 -1.44 8.85 37.16 0.33 -1.11 16 4 C 0.10 1.28 2.38 -26.69 -0.06 1.22 16 5 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 6 C 0.02 0.27 3.96 -3.71 -0.01 0.26 16 7 N -0.54 -8.34 4.94 -234.30 -1.16 -9.49 16 8 C 0.05 0.92 5.38 -3.82 -0.02 0.90 16 9 C -0.14 -3.03 4.44 -26.73 -0.12 -3.15 16 10 C 0.03 0.66 4.97 -27.89 -0.14 0.52 16 11 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 12 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 15 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 C 0.01 0.18 5.33 -3.71 -0.02 0.16 16 20 C 0.07 0.82 7.01 37.21 0.26 1.08 16 21 O -0.38 -5.32 9.80 -35.23 -0.35 -5.67 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.66 7.68 -51.93 -0.40 0.26 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.65 6.51 -51.93 -0.34 0.31 16 29 H 0.08 1.18 6.62 -51.93 -0.34 0.83 16 30 H 0.05 0.85 6.41 -51.92 -0.33 0.51 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 33 H 0.05 1.01 6.61 -51.93 -0.34 0.67 16 34 H 0.05 1.05 6.42 -51.93 -0.33 0.71 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.05 0.79 6.59 -51.93 -0.34 0.45 16 39 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 316.22 15.07 4.77 4.77 Total: -1.00 -30.48 316.22 -8.60 -39.08 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -7.47 Total: -3.00 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -0.11 Total: -16.16 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.42 Total: -35.92 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.35 Total: -5.67 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.48 -8.60 -39.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351208231.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.375 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds