Wall clock time and date at job start Sun Mar 29 2020 22:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99735 * 2 1 4 4 H 1.08989 * 110.27845 * 27.91207 * 3 2 1 5 5 C 1.54593 * 110.30679 * 265.71119 * 3 2 1 6 6 C 1.54934 * 102.92333 * 219.13092 * 5 3 2 7 7 N 1.48537 * 103.22527 * 37.41914 * 6 5 3 8 8 C 1.46901 * 110.99784 * 200.28194 * 7 6 5 9 9 C 1.53000 * 109.46914 * 279.05426 * 8 7 6 10 10 C 1.53008 * 109.47151 * 64.20416 * 9 8 7 11 11 C 1.52996 * 109.47243 * 184.20494 * 9 8 7 12 12 C 1.53004 * 109.47531 * 304.20663 * 9 8 7 13 13 C 1.50697 * 109.47507 * 179.97438 * 12 9 8 14 14 H 1.08001 * 119.99749 * 0.02562 * 13 12 9 15 15 C 1.37874 * 119.99803 * 179.97438 * 13 12 9 16 16 N 1.31515 * 119.99638 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00503 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47164 * 89.99480 * 17 15 13 19 19 H 1.48498 * 109.47404 * 210.00074 * 17 15 13 20 20 H 1.48504 * 109.47053 * 330.00417 * 17 15 13 21 21 C 1.47899 * 105.81699 * 320.78863 * 7 6 5 22 22 H 1.09000 * 109.47171 * 300.00293 * 1 2 3 23 23 H 1.08995 * 109.47332 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46772 * 60.00057 * 1 2 3 25 25 H 1.09000 * 110.72601 * 337.49020 * 5 3 2 26 26 H 1.09000 * 110.72352 * 100.77319 * 5 3 2 27 27 H 1.09002 * 110.66763 * 278.98063 * 6 5 3 28 28 H 1.09004 * 110.66879 * 155.84726 * 6 5 3 29 29 H 1.08997 * 109.47745 * 39.05161 * 8 7 6 30 30 H 1.08997 * 109.47320 * 159.06244 * 8 7 6 31 31 H 1.08997 * 109.46805 * 41.61600 * 10 9 8 32 32 H 1.09001 * 109.46882 * 161.61445 * 10 9 8 33 33 H 1.08995 * 109.47014 * 281.61569 * 10 9 8 34 34 H 1.08999 * 109.47330 * 62.45558 * 11 9 8 35 35 H 1.09009 * 109.47174 * 182.45368 * 11 9 8 36 36 H 1.09007 * 109.47117 * 302.44745 * 11 9 8 37 37 H 1.09002 * 109.46762 * 300.00159 * 12 9 8 38 38 H 1.09001 * 109.46969 * 59.99749 * 12 9 8 39 39 H 0.96999 * 119.99657 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.92070 * 265.97978 * 21 7 6 41 41 H 1.09007 * 110.08173 * 144.77786 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3385 2.0180 0.4786 5 6 2.3275 1.7515 -1.4458 6 6 3.6858 2.4810 -1.2932 7 7 4.3955 1.6678 -0.2728 8 6 5.4768 2.4384 0.3556 9 6 6.7074 2.4250 -0.5535 10 6 6.3818 3.1457 -1.8633 11 6 7.8663 3.1378 0.1464 12 6 7.1048 0.9781 -0.8528 13 6 8.3165 0.9649 -1.7486 14 1 8.7592 1.8955 -2.0719 15 6 8.8605 -0.2351 -2.1547 16 7 9.9183 -0.2465 -2.9362 17 14 8.0962 -1.8446 -1.5939 18 1 7.0608 -2.2677 -2.5707 19 1 9.1489 -2.8881 -1.5051 20 1 7.4710 -1.6574 -0.2600 21 6 3.3702 1.2850 0.7221 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 2.4253 0.8877 -2.1033 26 1 1.5624 2.4343 -1.8155 27 1 3.5371 3.5005 -0.9374 28 1 4.2325 2.4774 -2.2362 29 1 5.1491 3.4667 0.5081 30 1 5.7305 1.9914 1.3168 31 1 5.7993 4.0419 -1.6497 32 1 7.3086 3.4256 -2.3641 33 1 5.8056 2.4832 -2.5090 34 1 8.1270 2.5993 1.0575 35 1 8.7297 3.1666 -0.5184 36 1 7.5678 4.1555 0.3985 37 1 7.3368 0.4647 0.0804 38 1 6.2792 0.4703 -1.3514 39 1 10.3012 -1.0908 -3.2216 40 1 3.3650 2.0008 1.5442 41 1 3.5735 0.2840 1.1028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353883260.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:34 Heat of formation + Delta-G solvation = -45.411754 kcal Electronic energy + Delta-G solvation = -18531.906587 eV Core-core repulsion = 15832.830560 eV Total energy + Delta-G solvation = -2699.076027 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.50961 -37.56312 -35.50741 -32.23333 -30.58657 -28.91431 -27.65258 -26.60679 -26.14841 -24.94723 -22.24839 -21.01509 -20.75136 -17.91896 -17.02930 -16.56639 -15.94763 -15.06960 -14.66512 -14.59949 -14.33942 -13.71583 -13.45207 -12.89315 -12.51188 -12.47410 -12.30494 -12.10308 -12.03176 -11.67439 -11.48530 -11.17191 -11.00628 -10.87106 -10.83167 -10.61277 -10.24732 -10.20548 -9.71933 -9.56648 -9.51716 -9.17041 -8.74664 -8.35654 -7.98259 -5.87265 -3.81821 3.46532 3.52702 3.61238 3.67117 4.21948 4.63227 4.66219 4.77004 4.97889 5.16822 5.22542 5.34030 5.40710 5.47511 5.50992 5.53780 5.64977 5.76830 5.82277 5.90793 5.95834 6.02545 6.15654 6.22783 6.25031 6.39536 6.43885 6.73303 6.79243 7.05518 7.10849 7.18940 7.22090 7.31160 7.45632 7.59411 7.79058 8.02316 8.73613 9.19312 9.77927 11.26138 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023157 B = 0.007168 C = 0.006067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.866391 B = 3905.315761 C = 4614.009579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.377 6.377 3 C 0.079 3.921 4 H 0.063 0.937 5 C -0.147 4.147 6 C 0.030 3.970 7 N -0.500 5.500 8 C 0.058 3.942 9 C -0.046 4.046 10 C -0.126 4.126 11 C -0.128 4.128 12 C 0.006 3.994 13 C -0.506 4.506 14 H 0.073 0.927 15 C 0.063 3.937 16 N -0.911 5.911 17 Si 0.877 3.123 18 H -0.279 1.279 19 H -0.294 1.294 20 H -0.265 1.265 21 C 0.037 3.963 22 H 0.038 0.962 23 H 0.084 0.916 24 H 0.039 0.961 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.040 0.960 28 H 0.100 0.900 29 H 0.027 0.973 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.007 0.993 38 H 0.029 0.971 39 H 0.259 0.741 40 H 0.047 0.953 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.530 5.778 6.614 19.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C 0.021 3.979 4 H 0.081 0.919 5 C -0.185 4.185 6 C -0.097 4.097 7 N -0.224 5.224 8 C -0.070 4.070 9 C -0.047 4.047 10 C -0.183 4.183 11 C -0.186 4.186 12 C -0.032 4.032 13 C -0.544 4.544 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.552 5.552 17 Si 0.705 3.295 18 H -0.205 1.205 19 H -0.220 1.220 20 H -0.189 1.189 21 C -0.091 4.091 22 H 0.057 0.943 23 H 0.102 0.898 24 H 0.058 0.942 25 H 0.105 0.895 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.118 0.882 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.026 0.974 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.054 5.033 6.315 18.869 hybrid contribution -0.883 0.006 0.642 1.092 sum -17.937 5.039 6.957 19.888 Atomic orbital electron populations 1.22759 0.81609 1.02597 0.99614 1.88015 1.19112 1.27466 1.94907 1.23028 0.94531 0.84363 0.95986 0.91909 1.23060 0.97210 1.01148 0.97118 1.23566 0.93372 0.94206 0.98602 1.64727 1.07899 1.38681 1.11067 1.22510 0.92482 0.94249 0.97768 1.20378 0.91738 0.98885 0.93694 1.21946 1.00954 0.97695 0.97680 1.21761 0.99159 0.97233 1.00414 1.19540 0.96668 0.90624 0.96318 1.21266 1.10868 0.94008 1.28286 0.90931 1.24993 0.94788 0.98989 0.94862 1.69927 1.22847 1.26207 1.36178 0.86819 0.78760 0.83770 0.80168 1.20485 1.22012 1.18940 1.22929 0.89799 1.02325 0.94081 0.94349 0.89762 0.94206 0.89495 0.91421 0.94222 0.88160 0.95470 0.91587 0.95520 0.92556 0.92174 0.93686 0.91179 0.95187 0.97431 0.95245 0.93125 0.93518 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.85 101.05 1.10 1.39 16 2 O -0.38 -5.10 10.29 -35.23 -0.36 -5.46 16 3 C 0.08 0.99 3.48 -25.38 -0.09 0.91 16 4 H 0.06 0.65 7.81 -51.94 -0.41 0.25 16 5 C -0.15 -1.86 6.80 -24.87 -0.17 -2.03 16 6 C 0.03 0.43 5.12 -1.90 -0.01 0.42 16 7 N -0.50 -8.29 4.23 -230.45 -0.98 -9.26 16 8 C 0.06 0.97 3.89 -3.82 -0.01 0.95 16 9 C -0.05 -0.91 0.60 -154.50 -0.09 -1.01 16 10 C -0.13 -2.36 6.56 37.16 0.24 -2.11 16 11 C -0.13 -2.41 8.11 37.16 0.30 -2.11 16 12 C 0.01 0.14 2.83 -27.88 -0.08 0.06 16 13 C -0.51 -14.34 8.38 -34.44 -0.29 -14.63 16 14 H 0.07 2.18 6.10 -52.49 -0.32 1.86 16 15 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 16 N -0.91 -28.66 13.96 55.43 0.77 -27.88 16 17 Si 0.88 22.92 27.47 -169.99 -4.67 18.25 16 18 H -0.28 -7.26 7.11 56.52 0.40 -6.85 16 19 H -0.29 -7.62 7.11 56.52 0.40 -7.21 16 20 H -0.26 -6.77 6.54 56.52 0.37 -6.40 16 21 C 0.04 0.52 6.41 -2.75 -0.02 0.51 16 22 H 0.04 0.30 8.10 -51.93 -0.42 -0.12 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.09 1.23 8.08 -51.93 -0.42 0.81 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.51 7.70 -51.93 -0.40 0.11 16 28 H 0.10 1.54 5.23 -51.93 -0.27 1.27 16 29 H 0.03 0.41 7.56 -51.93 -0.39 0.02 16 30 H 0.07 1.10 7.96 -51.93 -0.41 0.68 16 31 H 0.03 0.42 7.58 -51.93 -0.39 0.02 16 32 H 0.06 1.14 7.15 -51.93 -0.37 0.77 16 33 H 0.06 1.17 5.78 -51.93 -0.30 0.87 16 34 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.47 6.65 -51.92 -0.35 1.13 16 36 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.01 0.19 7.20 -51.93 -0.37 -0.19 16 38 H 0.03 0.75 6.91 -51.93 -0.36 0.39 16 39 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 40 H 0.05 0.58 7.77 -51.93 -0.40 0.18 16 41 H 0.09 1.39 7.96 -51.92 -0.41 0.98 16 LS Contribution 309.79 15.07 4.67 4.67 Total: -1.00 -31.67 309.79 -7.07 -38.73 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -7.29 Total: -3.17 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 0.78 Total: -15.87 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.20 Total: -37.15 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.36 Total: -5.46 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.67 Total: 18.25 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.67 -7.07 -38.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353883260.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.679 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds