Wall clock time and date at job start Sun Mar 29 2020 22:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99735 * 2 1 4 4 H 1.08989 * 110.27845 * 27.91207 * 3 2 1 5 5 C 1.54593 * 110.30679 * 265.71119 * 3 2 1 6 6 C 1.54934 * 102.92333 * 219.13092 * 5 3 2 7 7 N 1.48537 * 103.22527 * 37.41914 * 6 5 3 8 8 C 1.46901 * 110.99784 * 200.28194 * 7 6 5 9 9 C 1.53000 * 109.46914 * 279.05426 * 8 7 6 10 10 C 1.53008 * 109.47151 * 64.20416 * 9 8 7 11 11 C 1.52996 * 109.47243 * 184.20494 * 9 8 7 12 12 C 1.53004 * 109.47531 * 304.20663 * 9 8 7 13 13 C 1.50697 * 109.47507 * 179.97438 * 12 9 8 14 14 H 1.08001 * 119.99749 * 0.02562 * 13 12 9 15 15 C 1.37874 * 119.99803 * 179.97438 * 13 12 9 16 16 N 1.31515 * 119.99638 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00503 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47164 * 89.99480 * 17 15 13 19 19 H 1.48498 * 109.47404 * 210.00074 * 17 15 13 20 20 H 1.48504 * 109.47053 * 330.00417 * 17 15 13 21 21 C 1.47899 * 105.81699 * 320.78863 * 7 6 5 22 22 H 1.09000 * 109.47171 * 300.00293 * 1 2 3 23 23 H 1.08995 * 109.47332 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46772 * 60.00057 * 1 2 3 25 25 H 1.09000 * 110.72601 * 337.49020 * 5 3 2 26 26 H 1.09000 * 110.72352 * 100.77319 * 5 3 2 27 27 H 1.09002 * 110.66763 * 278.98063 * 6 5 3 28 28 H 1.09004 * 110.66879 * 155.84726 * 6 5 3 29 29 H 1.08997 * 109.47745 * 39.05161 * 8 7 6 30 30 H 1.08997 * 109.47320 * 159.06244 * 8 7 6 31 31 H 1.08997 * 109.46805 * 41.61600 * 10 9 8 32 32 H 1.09001 * 109.46882 * 161.61445 * 10 9 8 33 33 H 1.08995 * 109.47014 * 281.61569 * 10 9 8 34 34 H 1.08999 * 109.47330 * 62.45558 * 11 9 8 35 35 H 1.09009 * 109.47174 * 182.45368 * 11 9 8 36 36 H 1.09007 * 109.47117 * 302.44745 * 11 9 8 37 37 H 1.09002 * 109.46762 * 300.00159 * 12 9 8 38 38 H 1.09001 * 109.46969 * 59.99749 * 12 9 8 39 39 H 0.96999 * 119.99657 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.92070 * 265.97978 * 21 7 6 41 41 H 1.09007 * 110.08173 * 144.77786 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3385 2.0180 0.4786 5 6 2.3275 1.7515 -1.4458 6 6 3.6858 2.4810 -1.2932 7 7 4.3955 1.6678 -0.2728 8 6 5.4768 2.4384 0.3556 9 6 6.7074 2.4250 -0.5535 10 6 6.3818 3.1457 -1.8633 11 6 7.8663 3.1378 0.1464 12 6 7.1048 0.9781 -0.8528 13 6 8.3165 0.9649 -1.7486 14 1 8.7592 1.8955 -2.0719 15 6 8.8605 -0.2351 -2.1547 16 7 9.9183 -0.2465 -2.9362 17 14 8.0962 -1.8446 -1.5939 18 1 7.0608 -2.2677 -2.5707 19 1 9.1489 -2.8881 -1.5051 20 1 7.4710 -1.6574 -0.2600 21 6 3.3702 1.2850 0.7221 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 2.4253 0.8877 -2.1033 26 1 1.5624 2.4343 -1.8155 27 1 3.5371 3.5005 -0.9374 28 1 4.2325 2.4774 -2.2362 29 1 5.1491 3.4667 0.5081 30 1 5.7305 1.9914 1.3168 31 1 5.7993 4.0419 -1.6497 32 1 7.3086 3.4256 -2.3641 33 1 5.8056 2.4832 -2.5090 34 1 8.1270 2.5993 1.0575 35 1 8.7297 3.1666 -0.5184 36 1 7.5678 4.1555 0.3985 37 1 7.3368 0.4647 0.0804 38 1 6.2792 0.4703 -1.3514 39 1 10.3012 -1.0908 -3.2216 40 1 3.3650 2.0008 1.5442 41 1 3.5735 0.2840 1.1028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353883260.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:34 Heat of formation + Delta-G solvation = -66.812892 kcal Electronic energy + Delta-G solvation = -18532.834610 eV Core-core repulsion = 15832.830560 eV Total energy + Delta-G solvation = -2700.004050 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.62472 -38.76302 -36.83777 -34.40968 -31.78848 -30.09818 -29.52477 -27.90894 -27.13826 -26.23360 -24.26155 -22.11535 -21.75306 -19.52908 -18.81937 -17.89361 -17.07667 -16.27262 -16.01394 -15.76184 -15.61054 -15.38190 -14.84275 -14.47252 -14.32085 -13.86455 -13.56543 -13.32257 -13.22497 -13.00870 -12.78649 -12.76551 -12.49620 -12.31154 -12.18197 -12.01072 -11.78997 -11.69446 -11.55410 -11.19729 -10.90031 -10.79236 -10.64929 -10.46583 -9.15261 -8.19211 -6.16771 1.36406 1.37682 1.50947 2.42250 2.82733 3.12423 3.17493 3.67415 3.77548 4.09744 4.12687 4.21621 4.35630 4.38257 4.47346 4.55339 4.59021 4.65928 4.68554 4.82623 4.85126 4.88104 4.92158 4.92926 4.95801 5.03409 5.14846 5.19979 5.22590 5.43458 5.52633 5.60079 5.68390 5.81822 5.90060 6.08629 6.25422 6.36239 6.46447 6.91015 7.45930 8.97277 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023157 B = 0.007168 C = 0.006067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.866391 B = 3905.315761 C = 4614.009579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.083 3.917 4 H 0.092 0.908 5 C -0.142 4.142 6 C 0.030 3.970 7 N -0.533 5.533 8 C 0.068 3.932 9 C -0.049 4.049 10 C -0.117 4.117 11 C -0.123 4.123 12 C 0.015 3.985 13 C -0.500 4.500 14 H 0.043 0.957 15 C 0.004 3.996 16 N -0.956 5.956 17 Si 0.938 3.062 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.256 1.256 21 C 0.036 3.964 22 H 0.055 0.945 23 H 0.091 0.909 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.096 0.904 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.029 0.971 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.036 0.964 36 H 0.064 0.936 37 H -0.002 1.002 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.068 0.932 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.231 6.682 8.102 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.024 3.976 4 H 0.110 0.890 5 C -0.180 4.180 6 C -0.097 4.097 7 N -0.258 5.258 8 C -0.060 4.060 9 C -0.050 4.050 10 C -0.174 4.174 11 C -0.181 4.181 12 C -0.023 4.023 13 C -0.538 4.538 14 H 0.062 0.938 15 C -0.192 4.192 16 N -0.598 5.598 17 Si 0.764 3.236 18 H -0.201 1.201 19 H -0.215 1.215 20 H -0.180 1.180 21 C -0.092 4.092 22 H 0.074 0.926 23 H 0.109 0.891 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.114 0.886 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.016 0.984 38 H 0.038 0.962 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.774 5.943 7.811 22.076 hybrid contribution -0.042 -0.227 0.149 0.274 sum -19.817 5.716 7.960 22.107 Atomic orbital electron populations 1.22959 0.79604 1.03614 1.00924 1.87975 1.21438 1.28263 1.95058 1.23050 0.94158 0.84731 0.95614 0.88968 1.23026 0.97203 1.00696 0.97116 1.23547 0.93656 0.95264 0.97267 1.64583 1.09088 1.39721 1.12394 1.22315 0.91172 0.95972 0.96575 1.20363 0.93768 0.95744 0.95123 1.21855 0.99925 0.98830 0.96823 1.21682 0.97672 0.99303 0.99449 1.19414 0.94272 0.94107 0.94494 1.21584 1.11628 0.92741 1.27854 0.93835 1.25815 0.95394 1.02623 0.95325 1.70062 1.24623 1.27092 1.38072 0.85837 0.77981 0.79775 0.80038 1.20131 1.21455 1.17980 1.22921 0.90224 1.01651 0.94372 0.92636 0.89079 0.93180 0.91851 0.88555 0.92022 0.89968 0.92695 0.91585 0.91946 0.95222 0.93261 0.93630 0.94456 0.91673 0.98393 0.96250 0.93063 0.91370 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.85 113.37 1.23 1.63 16 2 O -0.41 -10.21 10.29 -148.98 -1.53 -11.75 16 3 C 0.08 1.82 3.48 31.47 0.11 1.93 16 4 H 0.09 1.49 7.81 -2.39 -0.02 1.47 16 5 C -0.14 -3.22 6.80 31.80 0.22 -3.00 16 6 C 0.03 0.77 5.12 86.65 0.44 1.21 16 7 N -0.53 -16.56 4.23 -883.00 -3.74 -20.29 16 8 C 0.07 2.08 3.89 86.30 0.34 2.41 16 9 C -0.05 -1.89 0.60 -52.18 -0.03 -1.93 16 10 C -0.12 -4.30 6.56 71.98 0.47 -3.83 16 11 C -0.12 -4.52 8.11 71.98 0.58 -3.94 16 12 C 0.01 0.71 2.83 29.85 0.08 0.80 16 13 C -0.50 -29.10 8.38 25.60 0.21 -28.89 16 14 H 0.04 2.74 6.10 -2.91 -0.02 2.72 16 15 C 0.00 0.22 5.47 84.65 0.46 0.69 16 16 N -0.96 -61.84 13.96 21.45 0.30 -61.55 16 17 Si 0.94 48.00 27.47 68.60 1.88 49.88 16 18 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 19 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 20 H -0.26 -12.59 6.54 99.48 0.65 -11.94 16 21 C 0.04 0.94 6.41 86.45 0.55 1.49 16 22 H 0.06 0.69 8.10 -2.39 -0.02 0.67 16 23 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 1.73 8.08 -2.39 -0.02 1.71 16 26 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 1.33 7.70 -2.39 -0.02 1.31 16 28 H 0.08 2.42 5.23 -2.38 -0.01 2.40 16 29 H 0.05 1.40 7.56 -2.39 -0.02 1.38 16 30 H 0.07 2.02 7.96 -2.39 -0.02 2.00 16 31 H 0.06 1.81 7.58 -2.39 -0.02 1.79 16 32 H 0.03 1.21 7.15 -2.39 -0.02 1.19 16 33 H 0.05 1.90 5.78 -2.39 -0.01 1.89 16 34 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.04 1.58 6.65 -2.38 -0.02 1.57 16 36 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.00 -0.12 7.20 -2.39 -0.02 -0.13 16 38 H 0.02 0.98 6.91 -2.39 -0.02 0.96 16 39 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 40 H 0.07 1.46 7.77 -2.39 -0.02 1.44 16 41 H 0.07 2.04 7.96 -2.38 -0.02 2.02 16 Total: -1.00 -69.90 309.79 2.50 -67.39 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 0.92 Total: 7.73 kcal Atomic # 6 Polarization: -36.10 SS G_CDS: 4.67 Total: -31.42 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -3.44 Total: -81.84 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -1.53 Total: -11.75 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 1.88 Total: 49.88 kcal Total: -69.90 2.50 -67.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353883260.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.582 kcal (2) G-P(sol) polarization free energy of solvation -69.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds