Wall clock time and date at job start Sun Mar 29 2020 22:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 110.99952 * 2 1 4 4 C 1.53001 * 109.47102 * 286.12997 * 3 2 1 5 5 C 1.53001 * 109.47418 * 307.12438 * 4 3 2 6 6 C 1.53004 * 109.46706 * 67.12058 * 4 3 2 7 7 C 1.52994 * 109.47104 * 187.12015 * 4 3 2 8 8 C 1.50700 * 109.47143 * 179.97438 * 7 4 3 9 9 H 1.07996 * 119.99996 * 0.02562 * 8 7 4 10 10 C 1.37877 * 119.99925 * 180.02562 * 8 7 4 11 11 N 1.31503 * 120.00346 * 0.02562 * 10 8 7 12 12 Si 1.86810 * 119.99690 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47067 * 0.02562 * 12 10 8 14 14 H 1.48495 * 109.47069 * 120.00109 * 12 10 8 15 15 H 1.48495 * 109.46702 * 240.00178 * 12 10 8 16 16 C 1.46896 * 110.99888 * 123.95452 * 2 1 3 17 17 C 1.53778 * 113.61879 * 60.59895 * 16 2 1 18 18 C 1.53782 * 87.08700 * 220.01798 * 17 16 2 19 19 O 1.42897 * 113.61499 * 139.97601 * 18 17 16 20 20 C 1.53787 * 113.61555 * 323.10153 * 16 2 1 21 21 H 1.09000 * 109.47022 * 335.34002 * 1 2 3 22 22 H 1.09000 * 109.46838 * 95.33681 * 1 2 3 23 23 H 1.09002 * 109.47271 * 215.33743 * 1 2 3 24 24 H 1.09000 * 109.47390 * 46.13674 * 3 2 1 25 25 H 1.08998 * 109.46860 * 166.13714 * 3 2 1 26 26 H 1.08999 * 109.47192 * 59.99391 * 5 4 3 27 27 H 1.08996 * 109.47111 * 179.97438 * 5 4 3 28 28 H 1.09001 * 109.46933 * 300.00376 * 5 4 3 29 29 H 1.09000 * 109.46662 * 43.39672 * 6 4 3 30 30 H 1.09002 * 109.46838 * 163.39210 * 6 4 3 31 31 H 1.08995 * 109.47543 * 283.39474 * 6 4 3 32 32 H 1.08998 * 109.47671 * 300.00429 * 7 4 3 33 33 H 1.09004 * 109.47390 * 60.00413 * 7 4 3 34 34 H 0.97005 * 120.00214 * 180.02562 * 11 10 8 35 35 H 1.09007 * 112.85167 * 191.79427 * 16 2 1 36 36 H 1.09002 * 113.61529 * 105.46655 * 17 16 2 37 37 H 1.09001 * 113.61596 * 334.56863 * 17 16 2 38 38 H 1.08992 * 113.61564 * 270.80133 * 18 17 16 39 39 H 0.96700 * 113.99734 * 180.02562 * 19 18 17 40 40 H 1.08998 * 113.61122 * 25.43667 * 20 16 2 41 41 H 1.09004 * 113.61506 * 254.53230 * 20 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8041 1.9912 -1.3857 5 6 2.4023 1.0644 -2.4460 6 6 0.3103 2.1802 -1.6579 7 6 2.5080 3.3485 -1.4390 8 6 2.3200 3.9587 -2.8040 9 1 1.7547 3.4312 -3.5580 10 6 2.8698 5.1902 -3.0903 11 7 3.5587 5.8323 -2.1724 12 14 2.6362 5.9468 -4.7823 13 1 1.8280 5.0310 -5.6267 14 1 1.9323 7.2476 -4.6499 15 1 3.9621 6.1636 -5.4149 16 6 1.9954 -0.7660 1.1375 17 6 1.5705 -2.2439 1.1347 18 6 1.3910 -2.1139 2.6564 19 8 0.2391 -2.7953 3.1572 20 6 1.1642 -0.6110 2.4221 21 1 -0.3633 0.9339 0.4288 22 1 -0.3633 -0.0956 -1.0232 23 1 -0.3634 -0.8383 0.5944 24 1 1.4609 1.9659 0.7409 25 1 3.0571 1.3530 0.2462 26 1 1.9009 0.0974 -2.4080 27 1 2.2656 1.5058 -3.4332 28 1 3.4664 0.9296 -2.2520 29 1 -0.1731 2.5824 -0.7676 30 1 0.1773 2.8737 -2.4883 31 1 -0.1372 1.2193 -1.9117 32 1 2.0818 4.0088 -0.6836 33 1 3.5721 3.2139 -1.2451 34 1 3.9452 6.6989 -2.3737 35 1 3.0651 -0.6196 1.2878 36 1 2.3690 -2.9273 0.8460 37 1 0.6392 -2.4294 0.5994 38 1 2.2947 -2.3373 3.2233 39 1 0.1207 -2.7169 4.1137 40 1 0.1219 -0.3501 2.2388 41 1 1.6348 0.0239 3.1728 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355375213.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:48 Heat of formation + Delta-G solvation = -27.669337 kcal Electronic energy + Delta-G solvation = -18319.533603 eV Core-core repulsion = 15621.226945 eV Total energy + Delta-G solvation = -2698.306658 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.09026 -37.51040 -35.46907 -33.14255 -31.78717 -27.75195 -26.93878 -26.08072 -25.76774 -24.80630 -23.10535 -21.52686 -19.09986 -17.83844 -17.80012 -16.14220 -15.74186 -15.59140 -14.87329 -14.40511 -13.85297 -13.78030 -13.13444 -12.91848 -12.72485 -12.47000 -12.11070 -12.05547 -11.77753 -11.39854 -11.25656 -10.92875 -10.89085 -10.73307 -10.66887 -10.57880 -10.31559 -10.17495 -9.96292 -9.89453 -9.57286 -8.92780 -8.78305 -8.29290 -7.87862 -5.93869 -3.93403 3.34173 3.41986 3.45848 3.91019 4.36472 4.51103 4.53974 4.59800 4.79092 4.89506 5.34613 5.41760 5.43618 5.64876 5.67385 5.70420 5.80290 5.86120 5.89376 5.99685 6.07165 6.18270 6.25725 6.38256 6.42647 6.64271 6.76063 6.84751 6.93825 7.25745 7.30117 7.35289 7.42993 7.46651 7.55211 7.74850 7.90183 8.06974 8.52160 9.12251 9.69181 11.17912 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.057166 B = 0.004686 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.687250 B = 5973.255264 C = 6089.489651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.520 5.520 3 C 0.068 3.932 4 C -0.054 4.054 5 C -0.113 4.113 6 C -0.138 4.138 7 C 0.033 3.967 8 C -0.504 4.504 9 H 0.060 0.940 10 C 0.054 3.946 11 N -0.898 5.898 12 Si 0.887 3.113 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.285 1.285 16 C 0.067 3.933 17 C -0.121 4.121 18 C 0.075 3.925 19 O -0.561 6.561 20 C -0.209 4.209 21 H 0.038 0.962 22 H 0.073 0.927 23 H 0.057 0.943 24 H 0.029 0.971 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.037 0.963 29 H 0.034 0.966 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.011 0.989 33 H 0.014 0.986 34 H 0.258 0.742 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.375 0.625 40 H 0.095 0.905 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.564 -14.130 9.259 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.242 5.242 3 C -0.059 4.059 4 C -0.055 4.055 5 C -0.170 4.170 6 C -0.195 4.195 7 C -0.004 4.004 8 C -0.543 4.543 9 H 0.078 0.922 10 C -0.146 4.146 11 N -0.538 5.538 12 Si 0.715 3.285 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.212 1.212 16 C -0.043 4.043 17 C -0.159 4.159 18 C 0.016 3.984 19 O -0.366 6.366 20 C -0.248 4.248 21 H 0.057 0.943 22 H 0.091 0.909 23 H 0.075 0.925 24 H 0.047 0.953 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.030 0.970 33 H 0.032 0.968 34 H 0.067 0.933 35 H 0.121 0.879 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.221 0.779 40 H 0.114 0.886 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.378 -14.341 8.198 17.089 hybrid contribution -0.161 1.233 0.565 1.365 sum -4.539 -13.109 8.763 16.408 Atomic orbital electron populations 1.22855 0.88048 1.00264 1.02087 1.61978 1.07500 1.14959 1.39731 1.22398 0.98998 0.86218 0.98294 1.20578 0.95661 0.97242 0.92015 1.21570 0.99145 0.97618 0.98703 1.22137 0.95814 1.00330 1.01234 1.19124 0.94983 0.89319 0.96972 1.21285 1.32327 1.02572 0.98077 0.92187 1.25012 0.95559 0.97360 0.96683 1.69975 1.35822 1.14727 1.33324 0.86618 0.77785 0.79191 0.84917 1.19752 1.21224 1.21169 1.23002 0.98840 0.93974 0.88486 1.23228 1.02567 0.96687 0.93372 1.23264 0.88117 0.91298 0.95735 1.86528 1.46665 1.76154 1.27283 1.24501 1.02694 0.97387 1.00234 0.94327 0.90895 0.92478 0.95274 0.91658 0.93700 0.92923 0.94396 0.94706 0.91609 0.93733 0.97033 0.96775 0.93268 0.87933 0.90745 0.88825 0.90256 0.77863 0.88641 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 6.90 60.07 0.41 0.62 16 2 N -0.52 -7.72 3.76 -233.90 -0.88 -8.60 16 3 C 0.07 1.19 4.11 -3.82 -0.02 1.17 16 4 C -0.05 -1.10 0.60 -154.51 -0.09 -1.20 16 5 C -0.11 -2.24 7.91 37.16 0.29 -1.94 16 6 C -0.14 -2.65 7.14 37.16 0.27 -2.38 16 7 C 0.03 0.85 4.04 -27.89 -0.11 0.74 16 8 C -0.50 -13.91 7.41 -34.44 -0.26 -14.17 16 9 H 0.06 1.62 5.82 -52.49 -0.31 1.32 16 10 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 11 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 12 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 16 C 0.07 0.83 3.85 -66.90 -0.26 0.57 16 17 C -0.12 -1.36 7.29 -25.92 -0.19 -1.55 16 18 C 0.08 0.75 5.21 -25.91 -0.14 0.61 16 19 O -0.56 -5.74 13.67 -35.23 -0.48 -6.22 16 20 C -0.21 -2.32 7.11 -25.91 -0.18 -2.50 16 21 H 0.04 0.55 6.26 -51.93 -0.33 0.23 16 22 H 0.07 1.03 6.00 -51.93 -0.31 0.72 16 23 H 0.06 0.72 4.81 -51.93 -0.25 0.47 16 24 H 0.03 0.52 7.54 -51.93 -0.39 0.13 16 25 H 0.06 1.16 7.79 -51.93 -0.40 0.75 16 26 H 0.04 0.81 7.42 -51.93 -0.39 0.42 16 27 H 0.05 1.11 6.62 -51.93 -0.34 0.77 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.03 0.64 7.09 -51.93 -0.37 0.27 16 30 H 0.06 1.40 6.26 -51.93 -0.33 1.07 16 31 H 0.04 0.75 5.27 -51.93 -0.27 0.48 16 32 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.10 1.24 7.88 -51.92 -0.41 0.83 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.16 6.65 -51.93 -0.35 0.81 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.37 2.18 9.12 45.56 0.42 2.60 16 40 H 0.10 1.15 5.88 -51.93 -0.31 0.85 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 306.17 15.07 4.61 4.61 Total: -1.00 -30.46 306.17 -7.40 -37.85 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.00 Total: 0.49 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -0.37 Total: -18.57 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: -0.14 Total: -34.87 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.48 Total: -6.22 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.46 -7.40 -37.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355375213.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.185 kcal (2) G-P(sol) polarization free energy of solvation -30.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds