Wall clock time and date at job start Sun Mar 29 2020 22:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47100 * 2 1 4 4 C 1.52998 * 109.47287 * 119.99931 * 2 1 3 5 5 C 1.52997 * 109.47448 * 65.00016 * 4 2 1 6 6 O 1.42896 * 109.47699 * 180.02562 * 5 4 2 7 7 C 1.42895 * 114.00465 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47477 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.47125 * 65.00300 * 8 7 6 10 10 C 1.36939 * 120.00013 * 270.00262 * 9 8 7 11 11 H 1.07997 * 120.00318 * 144.69488 * 10 9 8 12 12 C 1.38811 * 119.99689 * 324.69413 * 10 9 8 13 13 N 1.31618 * 120.00384 * 338.16118 * 12 10 9 14 14 Si 1.86802 * 120.00164 * 158.15950 * 12 10 9 15 15 H 1.48497 * 109.46859 * 59.99884 * 14 12 10 16 16 H 1.48501 * 109.47351 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47208 * 300.00163 * 14 12 10 18 18 C 1.46497 * 120.00181 * 89.99754 * 9 8 7 19 19 C 1.53008 * 117.50032 * 183.23996 * 18 9 8 20 20 C 1.53003 * 117.49891 * 114.58229 * 18 9 8 21 21 H 1.08998 * 109.47364 * 300.00191 * 1 2 3 22 22 H 1.08994 * 109.47036 * 60.00297 * 1 2 3 23 23 H 1.09007 * 109.47135 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47364 * 239.99809 * 2 1 3 25 25 H 1.08999 * 109.47241 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.46933 * 299.99766 * 3 2 1 27 27 H 1.09001 * 109.47109 * 60.00203 * 3 2 1 28 28 H 1.09004 * 109.46930 * 305.00315 * 4 2 1 29 29 H 1.08999 * 109.47742 * 185.00622 * 4 2 1 30 30 H 1.08998 * 109.46841 * 59.99507 * 5 4 2 31 31 H 1.09006 * 109.46937 * 300.00626 * 5 4 2 32 32 H 1.09006 * 109.46993 * 300.00198 * 7 6 5 33 33 H 1.09004 * 109.46870 * 59.99638 * 7 6 5 34 34 H 1.09006 * 109.47247 * 184.99996 * 8 7 6 35 35 H 1.08997 * 109.47273 * 305.00368 * 8 7 6 36 36 H 0.97003 * 120.00478 * 175.75024 * 13 12 10 37 37 H 1.08995 * 115.55203 * 328.90730 * 18 9 8 38 38 H 1.09008 * 117.49639 * 0.02562 * 19 18 9 39 39 H 1.08997 * 117.50158 * 145.01926 * 19 18 9 40 40 H 1.08999 * 117.49737 * 214.98195 * 20 18 9 41 41 H 1.09000 * 117.49798 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 8 2.1111 -2.8690 2.3551 7 6 1.7852 -4.2596 2.3971 8 6 2.3417 -4.8752 3.6824 9 7 1.6657 -4.2837 4.8397 10 6 2.1763 -3.1581 5.4294 11 1 1.5100 -2.4127 5.8377 12 6 3.5504 -2.9753 5.5023 13 7 4.3577 -4.0114 5.4171 14 14 4.2540 -1.2588 5.7211 15 1 3.7465 -0.6737 6.9881 16 1 5.7364 -1.3337 5.7687 17 1 3.8384 -0.4042 4.5799 18 6 0.4435 -4.8961 5.3662 19 6 -0.2573 -4.1889 6.5280 20 6 0.5026 -5.4949 6.7729 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 3.1300 1.4426 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6053 -0.2617 2.1370 29 1 3.1263 -0.6443 1.2953 30 1 2.0698 -2.6549 0.3003 31 1 0.5489 -2.2724 1.1421 32 1 0.7020 -4.3797 2.3756 33 1 2.2236 -4.7618 1.5347 34 1 2.1711 -5.9518 3.6732 35 1 3.4117 -4.6775 3.7464 36 1 5.3184 -3.8781 5.4060 37 1 -0.1845 -5.3993 4.6310 38 1 0.1909 -3.2677 6.9004 39 1 -1.3462 -4.2272 6.5574 40 1 -0.0866 -6.3919 6.9633 41 1 1.4511 -5.4335 7.3065 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355941774.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:09 Heat of formation + Delta-G solvation = -16.811106 kcal Electronic energy + Delta-G solvation = -18230.082283 eV Core-core repulsion = 15532.246473 eV Total energy + Delta-G solvation = -2697.835810 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -37.74262 -36.84421 -35.70344 -33.31160 -30.90559 -29.17622 -27.34573 -27.09638 -24.13872 -22.62153 -21.60216 -21.16179 -19.81433 -19.49646 -16.33224 -15.92372 -15.54898 -15.09116 -14.87584 -14.35230 -13.92903 -13.68592 -13.51690 -13.01564 -12.63495 -12.22341 -12.02256 -11.81181 -11.63788 -11.27380 -11.18352 -10.80735 -10.75639 -10.58557 -10.52926 -10.46372 -10.25795 -10.10267 -9.97226 -9.56899 -9.51594 -9.20808 -8.69356 -8.28411 -6.43285 -5.62586 -3.20760 3.48399 3.53148 3.59325 4.40245 4.61553 4.97094 5.01310 5.02178 5.19268 5.33312 5.52634 5.53950 5.62671 5.74492 5.77812 5.80626 5.87736 5.95785 5.99196 6.10596 6.13033 6.15726 6.18648 6.24087 6.29889 6.39145 6.53900 6.54867 6.59571 6.63658 6.75155 6.80168 7.11136 7.28892 7.73266 7.94184 8.17880 8.63945 9.29482 9.94514 10.47556 11.34887 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019044 B = 0.007601 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.944730 B = 3683.068811 C = 4379.255797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.113 4.113 5 C 0.059 3.941 6 O -0.350 6.350 7 C 0.050 3.950 8 C 0.142 3.858 9 N -0.545 5.545 10 C -0.235 4.235 11 H 0.060 0.940 12 C 0.017 3.983 13 N -0.892 5.892 14 Si 0.894 3.106 15 H -0.286 1.286 16 H -0.294 1.294 17 H -0.279 1.279 18 C 0.120 3.880 19 C -0.196 4.196 20 C -0.222 4.222 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.031 0.969 31 H 0.038 0.962 32 H 0.026 0.974 33 H 0.024 0.976 34 H 0.041 0.959 35 H 0.109 0.891 36 H 0.252 0.748 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.243 3.768 -9.573 12.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.150 4.150 5 C -0.019 4.019 6 O -0.268 6.268 7 C -0.029 4.029 8 C 0.015 3.985 9 N -0.261 5.261 10 C -0.364 4.364 11 H 0.078 0.922 12 C -0.182 4.182 13 N -0.535 5.535 14 Si 0.724 3.276 15 H -0.212 1.212 16 H -0.220 1.220 17 H -0.206 1.206 18 C 0.011 3.989 19 C -0.234 4.234 20 C -0.264 4.264 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.042 0.958 34 H 0.059 0.941 35 H 0.126 0.874 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.924 3.859 -9.379 11.745 hybrid contribution 0.194 0.702 -0.134 0.741 sum -5.730 4.562 -9.512 12.005 Atomic orbital electron populations 1.21904 0.95401 1.01866 1.01455 1.21052 0.95822 0.96143 0.98232 1.21822 1.01040 0.95945 1.01501 1.21529 1.01694 0.94055 0.97751 1.22417 0.97256 0.93068 0.89118 1.88217 1.77520 1.21546 1.39539 1.23362 0.97560 0.82224 0.99772 1.21077 1.01973 0.92641 0.82776 1.43300 1.24723 1.28770 1.29346 1.18824 0.89321 0.94872 1.33404 0.92220 1.24951 0.96818 0.96658 0.99816 1.70006 1.02631 1.28221 1.52667 0.86505 0.77475 0.85558 0.78054 1.21203 1.21965 1.20557 1.21209 0.91790 0.98399 0.87517 1.23014 0.96567 0.97534 1.06323 1.23370 1.01772 0.94749 1.06469 0.92522 0.93135 0.92488 0.91478 0.92687 0.92964 0.92582 0.91026 0.91448 0.95055 0.94409 0.95591 0.95795 0.94068 0.87375 0.93811 0.89891 0.88487 0.90947 0.91380 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.95 37.16 0.33 -1.37 16 2 C -0.09 -1.16 2.92 -90.62 -0.26 -1.43 16 3 C -0.15 -1.63 9.19 37.16 0.34 -1.29 16 4 C -0.11 -1.81 5.05 -26.73 -0.14 -1.94 16 5 C 0.06 1.02 5.69 37.16 0.21 1.23 16 6 O -0.35 -7.80 9.82 -35.23 -0.35 -8.15 16 7 C 0.05 1.03 6.28 37.15 0.23 1.26 16 8 C 0.14 3.36 5.76 -4.05 -0.02 3.34 16 9 N -0.55 -13.74 2.76 -165.66 -0.46 -14.19 16 10 C -0.23 -6.49 8.13 -15.06 -0.12 -6.61 16 11 H 0.06 1.68 6.56 -52.49 -0.34 1.33 16 12 C 0.02 0.47 4.97 -17.43 -0.09 0.38 16 13 N -0.89 -26.04 11.33 55.49 0.63 -25.42 16 14 Si 0.89 22.52 29.61 -169.99 -5.03 17.49 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 17 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 18 C 0.12 2.64 6.56 -67.93 -0.45 2.19 16 19 C -0.20 -4.00 9.80 -26.69 -0.26 -4.27 16 20 C -0.22 -4.65 10.36 -26.69 -0.28 -4.93 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.66 6.57 -51.93 -0.34 0.32 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.62 6.57 -51.93 -0.34 0.28 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 35 H 0.11 2.93 5.36 -51.93 -0.28 2.66 16 36 H 0.25 7.17 8.32 -40.82 -0.34 6.83 16 37 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 38 H 0.10 2.17 6.38 -51.92 -0.33 1.84 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.09 2.19 8.14 -51.93 -0.42 1.76 16 LS Contribution 328.44 15.07 4.95 4.95 Total: -1.00 -29.55 328.44 -8.29 -37.84 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.53 Total: 0.90 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -0.50 Total: -13.42 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.17 Total: -39.61 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.35 Total: -8.15 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.55 -8.29 -37.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355941774.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.026 kcal (2) G-P(sol) polarization free energy of solvation -29.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds