Wall clock time and date at job start Sun Mar 29 2020 22:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47100 * 2 1 4 4 C 1.52998 * 109.47287 * 119.99931 * 2 1 3 5 5 C 1.52997 * 109.47448 * 65.00016 * 4 2 1 6 6 O 1.42896 * 109.47699 * 180.02562 * 5 4 2 7 7 C 1.42895 * 114.00465 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47477 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.47125 * 65.00300 * 8 7 6 10 10 C 1.36939 * 120.00013 * 270.00262 * 9 8 7 11 11 H 1.07997 * 120.00318 * 144.69488 * 10 9 8 12 12 C 1.38811 * 119.99689 * 324.69413 * 10 9 8 13 13 N 1.31618 * 120.00384 * 338.16118 * 12 10 9 14 14 Si 1.86802 * 120.00164 * 158.15950 * 12 10 9 15 15 H 1.48497 * 109.46859 * 59.99884 * 14 12 10 16 16 H 1.48501 * 109.47351 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47208 * 300.00163 * 14 12 10 18 18 C 1.46497 * 120.00181 * 89.99754 * 9 8 7 19 19 C 1.53008 * 117.50032 * 183.23996 * 18 9 8 20 20 C 1.53003 * 117.49891 * 114.58229 * 18 9 8 21 21 H 1.08998 * 109.47364 * 300.00191 * 1 2 3 22 22 H 1.08994 * 109.47036 * 60.00297 * 1 2 3 23 23 H 1.09007 * 109.47135 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47364 * 239.99809 * 2 1 3 25 25 H 1.08999 * 109.47241 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.46933 * 299.99766 * 3 2 1 27 27 H 1.09001 * 109.47109 * 60.00203 * 3 2 1 28 28 H 1.09004 * 109.46930 * 305.00315 * 4 2 1 29 29 H 1.08999 * 109.47742 * 185.00622 * 4 2 1 30 30 H 1.08998 * 109.46841 * 59.99507 * 5 4 2 31 31 H 1.09006 * 109.46937 * 300.00626 * 5 4 2 32 32 H 1.09006 * 109.46993 * 300.00198 * 7 6 5 33 33 H 1.09004 * 109.46870 * 59.99638 * 7 6 5 34 34 H 1.09006 * 109.47247 * 184.99996 * 8 7 6 35 35 H 1.08997 * 109.47273 * 305.00368 * 8 7 6 36 36 H 0.97003 * 120.00478 * 175.75024 * 13 12 10 37 37 H 1.08995 * 115.55203 * 328.90730 * 18 9 8 38 38 H 1.09008 * 117.49639 * 0.02562 * 19 18 9 39 39 H 1.08997 * 117.50158 * 145.01926 * 19 18 9 40 40 H 1.08999 * 117.49737 * 214.98195 * 20 18 9 41 41 H 1.09000 * 117.49798 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 8 2.1111 -2.8690 2.3551 7 6 1.7852 -4.2596 2.3971 8 6 2.3417 -4.8752 3.6824 9 7 1.6657 -4.2837 4.8397 10 6 2.1763 -3.1581 5.4294 11 1 1.5100 -2.4127 5.8377 12 6 3.5504 -2.9753 5.5023 13 7 4.3577 -4.0114 5.4171 14 14 4.2540 -1.2588 5.7211 15 1 3.7465 -0.6737 6.9881 16 1 5.7364 -1.3337 5.7687 17 1 3.8384 -0.4042 4.5799 18 6 0.4435 -4.8961 5.3662 19 6 -0.2573 -4.1889 6.5280 20 6 0.5026 -5.4949 6.7729 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 3.1300 1.4426 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6053 -0.2617 2.1370 29 1 3.1263 -0.6443 1.2953 30 1 2.0698 -2.6549 0.3003 31 1 0.5489 -2.2724 1.1421 32 1 0.7020 -4.3797 2.3756 33 1 2.2236 -4.7618 1.5347 34 1 2.1711 -5.9518 3.6732 35 1 3.4117 -4.6775 3.7464 36 1 5.3184 -3.8781 5.4060 37 1 -0.1845 -5.3993 4.6310 38 1 0.1909 -3.2677 6.9004 39 1 -1.3462 -4.2272 6.5574 40 1 -0.0866 -6.3919 6.9633 41 1 1.4511 -5.4335 7.3065 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355941774.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:08 Heat of formation + Delta-G solvation = -32.627649 kcal Electronic energy + Delta-G solvation = -18230.768140 eV Core-core repulsion = 15532.246473 eV Total energy + Delta-G solvation = -2698.521667 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.29978 -38.45530 -36.98902 -35.18719 -32.83184 -30.62005 -29.03029 -28.03086 -26.11196 -23.89719 -23.32550 -22.83310 -21.44226 -20.82123 -18.26810 -17.56529 -17.02970 -16.84658 -16.40508 -15.89117 -15.59731 -15.17448 -14.72306 -14.44201 -14.18988 -13.71064 -13.52415 -13.24908 -12.96087 -12.91268 -12.63691 -12.50138 -12.42776 -12.25804 -11.97430 -11.94040 -11.62566 -11.59330 -11.52008 -11.36961 -11.30160 -10.88145 -10.37351 -10.23849 -8.45883 -7.71406 -5.33315 1.43143 1.47522 1.54635 2.55759 3.00321 3.22680 3.49675 3.54597 3.91641 4.00278 4.11020 4.31490 4.31994 4.45395 4.48703 4.51015 4.54811 4.64200 4.69728 4.75660 4.80809 4.89717 4.93918 4.95304 4.97578 5.01808 5.09069 5.11147 5.15320 5.28286 5.38775 5.44041 5.49239 5.56667 5.72740 5.83941 6.48846 6.71529 7.23975 7.94747 8.41799 9.20319 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019044 B = 0.007601 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.944730 B = 3683.068811 C = 4379.255797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.145 4.145 4 C -0.111 4.111 5 C 0.057 3.943 6 O -0.391 6.391 7 C 0.059 3.941 8 C 0.138 3.862 9 N -0.562 5.562 10 C -0.229 4.229 11 H 0.049 0.951 12 C -0.029 4.029 13 N -0.919 5.919 14 Si 0.941 3.059 15 H -0.280 1.280 16 H -0.295 1.295 17 H -0.282 1.282 18 C 0.100 3.900 19 C -0.184 4.184 20 C -0.216 4.216 21 H 0.048 0.952 22 H 0.072 0.928 23 H 0.054 0.946 24 H 0.080 0.920 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.247 0.753 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.111 0.889 40 H 0.103 0.897 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.082 3.909 -10.955 14.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.203 4.203 4 C -0.149 4.149 5 C -0.020 4.020 6 O -0.310 6.310 7 C -0.020 4.020 8 C 0.012 3.988 9 N -0.279 5.279 10 C -0.359 4.359 11 H 0.067 0.933 12 C -0.225 4.225 13 N -0.564 5.564 14 Si 0.770 3.230 15 H -0.206 1.206 16 H -0.221 1.221 17 H -0.209 1.209 18 C -0.008 4.008 19 C -0.222 4.222 20 C -0.256 4.256 21 H 0.067 0.933 22 H 0.091 0.909 23 H 0.073 0.927 24 H 0.098 0.902 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.131 0.869 38 H 0.089 0.911 39 H 0.129 0.871 40 H 0.122 0.878 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.787 4.001 -10.761 13.872 hybrid contribution 0.700 0.628 0.292 0.985 sum -7.087 4.630 -10.469 13.463 Atomic orbital electron populations 1.21890 0.94400 1.01969 1.02179 1.21034 0.96601 0.96455 0.96552 1.21826 1.00895 0.95273 1.02280 1.21554 1.00556 0.93863 0.98884 1.22616 0.98037 0.93214 0.88139 1.88156 1.78394 1.22404 1.42078 1.23155 0.98151 0.81886 0.98781 1.21022 1.00061 0.93655 0.84035 1.43464 1.25688 1.28648 1.30091 1.18879 0.89220 0.95601 1.32234 0.93336 1.25473 0.97264 0.98968 1.00830 1.70120 1.02284 1.29405 1.54603 0.85755 0.76684 0.82649 0.77883 1.20631 1.22144 1.20859 1.21548 0.91172 0.99475 0.88621 1.23017 0.98489 0.96037 1.04671 1.23274 1.00760 0.96582 1.05020 0.93294 0.90935 0.92691 0.90182 0.93006 0.90731 0.93250 0.93301 0.93145 0.93244 0.93167 0.94279 0.93418 0.92777 0.90964 0.94428 0.86938 0.91119 0.87115 0.87844 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.95 71.98 0.64 -2.37 16 2 C -0.09 -2.01 2.92 -10.79 -0.03 -2.05 16 3 C -0.15 -3.00 9.19 71.98 0.66 -2.33 16 4 C -0.11 -3.52 5.05 30.59 0.15 -3.36 16 5 C 0.06 1.89 5.69 71.98 0.41 2.30 16 6 O -0.39 -17.31 9.82 -148.98 -1.46 -18.77 16 7 C 0.06 2.35 6.28 71.98 0.45 2.81 16 8 C 0.14 6.54 5.76 86.38 0.50 7.04 16 9 N -0.56 -28.25 2.76 -678.04 -1.87 -30.12 16 10 C -0.23 -12.84 8.13 84.03 0.68 -12.16 16 11 H 0.05 2.79 6.56 -2.91 -0.02 2.77 16 12 C -0.03 -1.68 4.97 84.86 0.42 -1.26 16 13 N -0.92 -55.22 11.33 21.65 0.25 -54.97 16 14 Si 0.94 47.41 29.61 68.60 2.03 49.44 16 15 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 16 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 17 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 18 C 0.10 4.22 6.56 45.00 0.30 4.51 16 19 C -0.18 -7.16 9.80 30.62 0.30 -6.86 16 20 C -0.22 -8.67 10.36 30.62 0.32 -8.36 16 21 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.05 1.14 6.57 -2.38 -0.02 1.12 16 24 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.54 6.57 -2.38 -0.02 1.53 16 32 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.05 2.34 8.07 -2.38 -0.02 2.32 16 35 H 0.07 4.02 5.36 -2.39 -0.01 4.00 16 36 H 0.25 14.49 8.32 -92.71 -0.77 13.72 16 37 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 38 H 0.07 3.14 6.38 -2.38 -0.02 3.12 16 39 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 40 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 41 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -64.69 328.44 4.71 -59.98 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.96 Total: 16.52 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 4.81 Total: -22.09 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -1.62 Total: -85.08 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -1.46 Total: -18.77 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -64.69 4.71 -59.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355941774.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.357 kcal (2) G-P(sol) polarization free energy of solvation -64.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds