Wall clock time and date at job start Sun Mar 29 2020 22:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46594 * 2 1 4 4 C 1.52995 * 109.47095 * 119.99684 * 2 1 3 5 5 C 1.53000 * 109.47091 * 175.00124 * 4 2 1 6 6 C 1.53002 * 109.47326 * 180.02562 * 5 4 2 7 7 H 1.08993 * 109.47183 * 304.99940 * 6 5 4 8 8 O 1.42906 * 109.46803 * 65.00071 * 6 5 4 9 9 C 1.52997 * 109.47138 * 185.00010 * 6 5 4 10 10 N 1.46506 * 109.47073 * 180.02562 * 9 6 5 11 11 C 1.36933 * 120.00134 * 89.99863 * 10 9 6 12 12 H 1.07998 * 120.00311 * 216.80213 * 11 10 9 13 13 C 1.38811 * 119.99939 * 36.80301 * 11 10 9 14 14 N 1.31623 * 120.00377 * 21.11427 * 13 11 10 15 15 Si 1.86804 * 120.00051 * 201.11112 * 13 11 10 16 16 H 1.48494 * 109.47218 * 59.99955 * 15 13 11 17 17 H 1.48493 * 109.47098 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46835 * 300.00188 * 15 13 11 19 19 C 1.46502 * 119.99388 * 269.99844 * 10 9 6 20 20 C 1.53001 * 117.49292 * 194.51259 * 19 10 9 21 21 C 1.53000 * 117.49410 * 125.85397 * 19 10 9 22 22 H 1.09002 * 109.46971 * 299.99866 * 1 2 3 23 23 H 1.08996 * 109.47372 * 60.00336 * 1 2 3 24 24 H 1.09003 * 109.47134 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47039 * 239.99956 * 2 1 3 26 26 H 1.09003 * 109.46560 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.46987 * 299.99900 * 3 2 1 28 28 H 1.09002 * 109.47353 * 60.00367 * 3 2 1 29 29 H 1.09001 * 109.47329 * 55.00109 * 4 2 1 30 30 H 1.09000 * 109.47730 * 295.00278 * 4 2 1 31 31 H 1.09001 * 109.47046 * 59.99812 * 5 4 2 32 32 H 1.09005 * 109.47057 * 299.99898 * 5 4 2 33 33 H 0.96695 * 114.00442 * 60.00455 * 8 6 5 34 34 H 1.09005 * 109.47356 * 299.99878 * 9 6 5 35 35 H 1.08993 * 109.47201 * 59.99927 * 9 6 5 36 36 H 0.96995 * 120.00352 * 174.77415 * 14 13 11 37 37 H 1.08989 * 115.55125 * 340.17774 * 19 10 9 38 38 H 1.09004 * 117.50290 * 359.97438 * 20 19 10 39 39 H 1.09004 * 117.49755 * 145.02640 * 20 19 10 40 40 H 1.09003 * 117.49429 * 214.97460 * 21 19 10 41 41 H 1.08994 * 117.50192 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8309 1.1880 6 6 4.0749 -1.5527 2.4370 7 1 3.7115 -1.0392 3.3271 8 8 3.5985 -2.9000 2.4363 9 6 5.6048 -1.5526 2.4370 10 7 6.0932 -2.2443 3.6326 11 6 6.3214 -3.5940 3.5976 12 1 6.0993 -4.2019 4.4622 13 6 6.8382 -4.1810 2.4508 14 7 7.4881 -3.4479 1.5718 15 14 6.6114 -6.0115 2.1549 16 1 5.1616 -6.3277 2.0977 17 1 7.2518 -6.3882 0.8692 18 1 7.2409 -6.7737 3.2631 19 6 6.3373 -1.4917 4.8656 20 6 7.1550 -2.1779 5.9618 21 6 5.6474 -1.9815 6.1404 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6054 -1.7197 1.2952 30 1 1.7517 -0.1583 2.1370 31 1 3.9995 0.1676 1.1420 32 1 3.8532 -1.3939 0.3003 33 1 3.8839 -3.4178 1.6712 34 1 5.9682 -2.0662 1.5468 35 1 5.9681 -0.5250 2.4374 36 1 7.9143 -3.8694 0.8092 37 1 6.4630 -0.4161 4.7428 38 1 7.5109 -3.1894 5.7657 39 1 7.8182 -1.5535 6.5605 40 1 5.3195 -1.2279 6.8565 41 1 5.0116 -2.8633 6.0616 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361270262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:33 Heat of formation + Delta-G solvation = -30.629672 kcal Electronic energy + Delta-G solvation = -18293.357975 eV Core-core repulsion = 15594.922947 eV Total energy + Delta-G solvation = -2698.435028 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -37.88823 -36.72280 -35.47791 -33.10392 -31.17117 -30.18907 -27.14549 -26.99057 -24.38649 -22.57647 -21.30182 -20.55575 -19.87042 -19.64990 -16.47948 -15.70624 -15.20247 -14.95477 -14.63012 -14.27725 -14.15949 -13.76258 -13.31417 -12.97078 -12.49404 -12.35129 -12.16342 -11.84503 -11.52811 -11.11008 -11.03447 -10.77643 -10.75906 -10.61669 -10.54854 -10.47153 -10.38160 -10.21996 -9.97829 -9.78759 -9.59070 -9.23760 -8.86386 -8.39377 -6.39252 -5.76922 -3.29638 3.37591 3.43410 3.47971 4.46304 4.84819 4.99650 5.01888 5.05538 5.23405 5.40113 5.44896 5.57137 5.62241 5.70960 5.81007 5.82731 5.92069 5.95243 5.98372 6.09741 6.16852 6.22404 6.25251 6.29162 6.41854 6.44687 6.54190 6.57488 6.63487 6.69922 6.74039 6.97384 7.07343 7.23192 7.61927 7.86712 8.53637 8.68234 9.20835 9.83050 10.39721 11.23816 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020917 B = 0.006994 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.333781 B = 4002.535224 C = 4757.327268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.107 4.107 5 C -0.150 4.150 6 C 0.089 3.911 7 H 0.075 0.925 8 O -0.549 6.549 9 C 0.116 3.884 10 N -0.543 5.543 11 C -0.233 4.233 12 H 0.058 0.942 13 C 0.008 3.992 14 N -0.898 5.898 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.292 1.292 18 H -0.283 1.283 19 C 0.127 3.873 20 C -0.198 4.198 21 C -0.227 4.227 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.364 0.636 34 H 0.102 0.898 35 H 0.029 0.971 36 H 0.255 0.745 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.694 7.127 -2.183 11.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.205 4.205 4 C -0.145 4.145 5 C -0.189 4.189 6 C 0.028 3.972 7 H 0.093 0.907 8 O -0.352 6.352 9 C -0.010 4.010 10 N -0.258 5.258 11 C -0.363 4.363 12 H 0.076 0.924 13 C -0.191 4.191 14 N -0.541 5.541 15 Si 0.727 3.273 16 H -0.206 1.206 17 H -0.218 1.218 18 H -0.209 1.209 19 C 0.017 3.983 20 C -0.237 4.237 21 C -0.268 4.268 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.210 0.790 34 H 0.119 0.881 35 H 0.048 0.952 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.919 7.276 -1.863 11.660 hybrid contribution 0.237 -1.081 -0.598 1.258 sum -8.682 6.195 -2.460 10.945 Atomic orbital electron populations 1.21838 0.95804 1.01497 1.01193 1.21162 0.95186 0.96357 0.99089 1.21886 1.01483 0.96076 1.01063 1.21564 0.95989 1.00394 0.96559 1.22346 0.95366 1.01178 0.99980 1.22619 0.96748 0.82588 0.95280 0.90665 1.86473 1.75871 1.23306 1.49597 1.21694 0.90190 0.95360 0.93793 1.43238 1.71919 1.04654 1.05976 1.18820 1.35723 0.82289 0.99483 0.92394 1.25105 0.97465 0.97502 0.98997 1.69877 1.34562 1.34525 1.15160 0.86455 0.78255 0.85537 0.77088 1.20590 1.21830 1.20906 1.21116 0.99962 0.93477 0.83753 1.23080 0.92878 1.03184 1.04573 1.23362 0.95279 1.03689 1.04458 0.92927 0.93214 0.92832 0.91524 0.92234 0.93353 0.92951 0.91622 0.92574 0.91749 0.92153 0.78976 0.88055 0.95231 0.93459 0.89660 0.88419 0.90959 0.91136 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.19 37.16 0.34 -1.19 16 2 C -0.10 -1.18 2.92 -90.62 -0.26 -1.44 16 3 C -0.15 -1.62 8.95 37.16 0.33 -1.29 16 4 C -0.11 -1.50 4.58 -26.73 -0.12 -1.62 16 5 C -0.15 -2.36 4.65 -26.73 -0.12 -2.48 16 6 C 0.09 1.73 3.24 -26.73 -0.09 1.64 16 7 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 8 O -0.55 -11.66 12.14 -35.23 -0.43 -12.09 16 9 C 0.12 2.60 5.05 -4.04 -0.02 2.58 16 10 N -0.54 -13.30 2.74 -165.66 -0.45 -13.76 16 11 C -0.23 -6.23 7.42 -15.06 -0.11 -6.34 16 12 H 0.06 1.61 7.16 -52.49 -0.38 1.23 16 13 C 0.01 0.21 4.97 -17.43 -0.09 0.13 16 14 N -0.90 -24.98 11.39 55.49 0.63 -24.34 16 15 Si 0.90 21.33 29.61 -169.99 -5.03 16.30 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C 0.13 2.77 6.61 -67.93 -0.45 2.32 16 20 C -0.20 -4.10 9.81 -26.69 -0.26 -4.36 16 21 C -0.23 -4.55 10.08 -26.69 -0.27 -4.82 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.99 7.82 -51.93 -0.41 0.58 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.95 6.56 -51.93 -0.34 0.61 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.36 7.41 9.05 45.56 0.41 7.82 16 34 H 0.10 2.54 5.44 -51.93 -0.28 2.26 16 35 H 0.03 0.63 8.04 -51.93 -0.42 0.21 16 36 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 37 H 0.09 1.72 8.10 -51.94 -0.42 1.29 16 38 H 0.10 2.23 6.95 -51.93 -0.36 1.87 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.09 1.87 7.97 -51.93 -0.41 1.46 16 LS Contribution 326.21 15.07 4.92 4.92 Total: -1.00 -27.98 326.21 -8.22 -36.20 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -6.73 Total: 9.65 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -1.12 Total: -16.87 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.18 Total: -38.10 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.43 Total: -12.09 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.98 -8.22 -36.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361270262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.568 kcal (2) G-P(sol) polarization free energy of solvation -27.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds