Wall clock time and date at job start Sun Mar 29 2020 22:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46594 * 2 1 4 4 C 1.52995 * 109.47095 * 119.99684 * 2 1 3 5 5 C 1.53000 * 109.47091 * 175.00124 * 4 2 1 6 6 C 1.53002 * 109.47326 * 180.02562 * 5 4 2 7 7 H 1.08993 * 109.47183 * 304.99940 * 6 5 4 8 8 O 1.42906 * 109.46803 * 65.00071 * 6 5 4 9 9 C 1.52997 * 109.47138 * 185.00010 * 6 5 4 10 10 N 1.46506 * 109.47073 * 180.02562 * 9 6 5 11 11 C 1.36933 * 120.00134 * 89.99863 * 10 9 6 12 12 H 1.07998 * 120.00311 * 216.80213 * 11 10 9 13 13 C 1.38811 * 119.99939 * 36.80301 * 11 10 9 14 14 N 1.31623 * 120.00377 * 21.11427 * 13 11 10 15 15 Si 1.86804 * 120.00051 * 201.11112 * 13 11 10 16 16 H 1.48494 * 109.47218 * 59.99955 * 15 13 11 17 17 H 1.48493 * 109.47098 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46835 * 300.00188 * 15 13 11 19 19 C 1.46502 * 119.99388 * 269.99844 * 10 9 6 20 20 C 1.53001 * 117.49292 * 194.51259 * 19 10 9 21 21 C 1.53000 * 117.49410 * 125.85397 * 19 10 9 22 22 H 1.09002 * 109.46971 * 299.99866 * 1 2 3 23 23 H 1.08996 * 109.47372 * 60.00336 * 1 2 3 24 24 H 1.09003 * 109.47134 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47039 * 239.99956 * 2 1 3 26 26 H 1.09003 * 109.46560 * 179.97438 * 3 2 1 27 27 H 1.08996 * 109.46987 * 299.99900 * 3 2 1 28 28 H 1.09002 * 109.47353 * 60.00367 * 3 2 1 29 29 H 1.09001 * 109.47329 * 55.00109 * 4 2 1 30 30 H 1.09000 * 109.47730 * 295.00278 * 4 2 1 31 31 H 1.09001 * 109.47046 * 59.99812 * 5 4 2 32 32 H 1.09005 * 109.47057 * 299.99898 * 5 4 2 33 33 H 0.96695 * 114.00442 * 60.00455 * 8 6 5 34 34 H 1.09005 * 109.47356 * 299.99878 * 9 6 5 35 35 H 1.08993 * 109.47201 * 59.99927 * 9 6 5 36 36 H 0.96995 * 120.00352 * 174.77415 * 14 13 11 37 37 H 1.08989 * 115.55125 * 340.17774 * 19 10 9 38 38 H 1.09004 * 117.50290 * 359.97438 * 20 19 10 39 39 H 1.09004 * 117.49755 * 145.02640 * 20 19 10 40 40 H 1.09003 * 117.49429 * 214.97460 * 21 19 10 41 41 H 1.08994 * 117.50192 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8309 1.1880 6 6 4.0749 -1.5527 2.4370 7 1 3.7115 -1.0392 3.3271 8 8 3.5985 -2.9000 2.4363 9 6 5.6048 -1.5526 2.4370 10 7 6.0932 -2.2443 3.6326 11 6 6.3214 -3.5940 3.5976 12 1 6.0993 -4.2019 4.4622 13 6 6.8382 -4.1810 2.4508 14 7 7.4881 -3.4479 1.5718 15 14 6.6114 -6.0115 2.1549 16 1 5.1616 -6.3277 2.0977 17 1 7.2518 -6.3882 0.8692 18 1 7.2409 -6.7737 3.2631 19 6 6.3373 -1.4917 4.8656 20 6 7.1550 -2.1779 5.9618 21 6 5.6474 -1.9815 6.1404 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6054 -1.7197 1.2952 30 1 1.7517 -0.1583 2.1370 31 1 3.9995 0.1676 1.1420 32 1 3.8532 -1.3939 0.3003 33 1 3.8839 -3.4178 1.6712 34 1 5.9682 -2.0662 1.5468 35 1 5.9681 -0.5250 2.4374 36 1 7.9143 -3.8694 0.8092 37 1 6.4630 -0.4161 4.7428 38 1 7.5109 -3.1894 5.7657 39 1 7.8182 -1.5535 6.5605 40 1 5.3195 -1.2279 6.8565 41 1 5.0116 -2.8633 6.0616 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361270262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:32 Heat of formation + Delta-G solvation = -46.350401 kcal Electronic energy + Delta-G solvation = -18294.039677 eV Core-core repulsion = 15594.922947 eV Total energy + Delta-G solvation = -2699.116730 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.45658 -38.20057 -36.82340 -34.99033 -32.83569 -31.78728 -28.62964 -27.97044 -26.18186 -24.04520 -22.94876 -22.09042 -21.60817 -20.75150 -18.35529 -17.44907 -16.66267 -16.54941 -16.14441 -15.95628 -15.44683 -15.33712 -14.69312 -14.30853 -13.94860 -13.60102 -13.57150 -13.03831 -12.99573 -12.66704 -12.64841 -12.58535 -12.29883 -12.16422 -12.07711 -11.86336 -11.66262 -11.59358 -11.44496 -11.35950 -11.24196 -10.94261 -10.46398 -10.38349 -8.34335 -7.77633 -5.34923 1.45586 1.48874 1.56142 2.51092 3.18028 3.36934 3.52791 3.85744 3.92048 4.06979 4.11392 4.28757 4.30960 4.46936 4.49858 4.58563 4.66134 4.70671 4.83101 4.86679 4.94733 4.96202 4.98737 5.01217 5.06926 5.10116 5.19599 5.29082 5.35006 5.37068 5.41781 5.55162 5.57004 5.57679 5.71771 5.81854 6.51760 7.01869 7.22613 7.90333 8.41039 9.17798 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020917 B = 0.006994 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.333781 B = 4002.535224 C = 4757.327268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.101 4.101 5 C -0.138 4.138 6 C 0.099 3.901 7 H 0.072 0.928 8 O -0.564 6.564 9 C 0.117 3.883 10 N -0.561 5.561 11 C -0.233 4.233 12 H 0.041 0.959 13 C -0.030 4.030 14 N -0.922 5.922 15 Si 0.950 3.050 16 H -0.277 1.277 17 H -0.292 1.292 18 H -0.285 1.285 19 C 0.101 3.899 20 C -0.195 4.195 21 C -0.206 4.206 22 H 0.055 0.945 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.366 0.634 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.252 0.748 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.668 8.255 -1.994 12.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.138 4.138 5 C -0.177 4.177 6 C 0.038 3.962 7 H 0.090 0.910 8 O -0.368 6.368 9 C -0.009 4.009 10 N -0.277 5.277 11 C -0.364 4.364 12 H 0.058 0.942 13 C -0.227 4.227 14 N -0.567 5.567 15 Si 0.779 3.221 16 H -0.203 1.203 17 H -0.218 1.218 18 H -0.212 1.212 19 C -0.008 4.008 20 C -0.234 4.234 21 C -0.247 4.247 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.212 0.788 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.907 8.415 -1.657 13.104 hybrid contribution 0.552 -1.394 -0.587 1.610 sum -9.354 7.021 -2.244 11.909 Atomic orbital electron populations 1.21815 0.94589 1.01639 1.02075 1.21135 0.96216 0.96651 0.97612 1.21874 1.01050 0.95470 1.01987 1.21490 0.94377 1.00061 0.97911 1.22204 0.96725 1.01063 0.97673 1.22479 0.94623 0.82195 0.96919 0.90978 1.86444 1.75970 1.24398 1.49983 1.21677 0.92084 0.94964 0.92170 1.43419 1.72659 1.04300 1.07302 1.18783 1.35068 0.83543 0.98979 0.94179 1.25589 0.97630 1.00511 0.98936 1.69989 1.35603 1.35598 1.15476 0.85628 0.78053 0.81869 0.76580 1.20271 1.21811 1.21159 1.21436 1.01569 0.94425 0.83352 1.23065 0.93904 1.02007 1.04452 1.23282 0.94408 1.03283 1.03731 0.92589 0.91805 0.93108 0.91827 0.92890 0.91959 0.92554 0.92930 0.92447 0.90541 0.92653 0.78822 0.90654 0.94553 0.93839 0.87620 0.91306 0.87913 0.87707 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.19 71.98 0.66 -2.05 16 2 C -0.10 -2.13 2.92 -10.79 -0.03 -2.16 16 3 C -0.15 -2.88 8.95 71.98 0.64 -2.24 16 4 C -0.10 -2.68 4.58 30.59 0.14 -2.54 16 5 C -0.14 -4.22 4.65 30.59 0.14 -4.08 16 6 C 0.10 3.79 3.24 30.59 0.10 3.89 16 7 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 8 O -0.56 -24.05 12.14 -148.98 -1.81 -25.86 16 9 C 0.12 5.26 5.05 86.38 0.44 5.69 16 10 N -0.56 -27.54 2.74 -678.04 -1.86 -29.40 16 11 C -0.23 -12.62 7.42 84.03 0.62 -12.00 16 12 H 0.04 2.29 7.16 -2.91 -0.02 2.27 16 13 C -0.03 -1.64 4.97 84.86 0.42 -1.22 16 14 N -0.92 -52.00 11.39 21.65 0.25 -51.76 16 15 Si 0.95 44.43 29.61 68.60 2.03 46.46 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 18 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 19 C 0.10 4.30 6.61 44.99 0.30 4.60 16 20 C -0.20 -7.84 9.81 30.62 0.30 -7.54 16 21 C -0.21 -7.92 10.08 30.62 0.31 -7.61 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.05 1.10 6.56 -2.39 -0.02 1.09 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 1.54 7.82 -2.39 -0.02 1.52 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 2.16 6.56 -2.39 -0.02 2.14 16 32 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.37 15.12 9.05 -74.06 -0.67 14.45 16 34 H 0.08 3.84 5.44 -2.38 -0.01 3.83 16 35 H 0.04 1.54 8.04 -2.39 -0.02 1.52 16 36 H 0.25 13.87 8.32 -92.71 -0.77 13.10 16 37 H 0.11 4.03 8.10 -2.39 -0.02 4.01 16 38 H 0.07 3.17 6.95 -2.38 -0.02 3.15 16 39 H 0.10 3.46 8.14 -2.38 -0.02 3.44 16 40 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.06 2.70 7.97 -2.39 -0.02 2.68 16 Total: -1.00 -59.33 326.21 2.96 -56.37 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.31 Total: 31.44 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 4.04 Total: -27.27 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -1.61 Total: -81.16 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -1.81 Total: -25.86 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -59.33 2.96 -56.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361270262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.022 kcal (2) G-P(sol) polarization free energy of solvation -59.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds