Wall clock time and date at job start Sun Mar 29 2020 22:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46933 * 2 1 4 4 C 1.52998 * 109.46794 * 119.99406 * 2 1 3 5 5 C 1.53000 * 109.46942 * 175.00202 * 4 2 1 6 6 C 1.53001 * 109.47228 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.47558 * 55.00213 * 6 5 4 8 8 O 1.42898 * 109.46955 * 294.99734 * 6 5 4 9 9 C 1.53004 * 109.47010 * 175.00140 * 6 5 4 10 10 N 1.46503 * 109.46899 * 184.99975 * 9 6 5 11 11 C 1.36936 * 120.00199 * 89.99962 * 10 9 6 12 12 H 1.08003 * 120.00016 * 304.30844 * 11 10 9 13 13 C 1.38807 * 120.00200 * 124.31229 * 11 10 9 14 14 N 1.31617 * 120.00124 * 165.03397 * 13 11 10 15 15 Si 1.86804 * 119.99943 * 345.02804 * 13 11 10 16 16 H 1.48499 * 109.46859 * 92.20183 * 15 13 11 17 17 H 1.48493 * 109.47199 * 212.19828 * 15 13 11 18 18 H 1.48495 * 109.47069 * 332.20235 * 15 13 11 19 19 C 1.46507 * 119.99891 * 269.72302 * 10 9 6 20 20 C 1.52993 * 117.49746 * 183.06375 * 19 10 9 21 21 C 1.52995 * 117.49658 * 114.44166 * 19 10 9 22 22 H 1.09003 * 109.47169 * 299.99958 * 1 2 3 23 23 H 1.09000 * 109.46690 * 60.00294 * 1 2 3 24 24 H 1.08997 * 109.46986 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47378 * 239.99629 * 2 1 3 26 26 H 1.09003 * 109.47159 * 60.00036 * 3 2 1 27 27 H 1.09000 * 109.46876 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47061 * 299.99929 * 3 2 1 29 29 H 1.09008 * 109.47143 * 55.00429 * 4 2 1 30 30 H 1.09000 * 109.47827 * 295.00137 * 4 2 1 31 31 H 1.08996 * 109.47256 * 60.00492 * 5 4 2 32 32 H 1.09000 * 109.47449 * 300.00164 * 5 4 2 33 33 H 0.96696 * 114.00390 * 299.99952 * 8 6 5 34 34 H 1.08998 * 109.47430 * 65.00107 * 9 6 5 35 35 H 1.09008 * 109.47102 * 304.99377 * 9 6 5 36 36 H 0.97001 * 120.00401 * 179.97438 * 14 13 11 37 37 H 1.08998 * 115.54503 * 328.77325 * 19 10 9 38 38 H 1.09004 * 117.49963 * 0.02562 * 20 19 10 39 39 H 1.08998 * 117.49809 * 145.01939 * 20 19 10 40 40 H 1.09000 * 117.49836 * 214.97832 * 21 19 10 41 41 H 1.09005 * 117.50361 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.8309 1.1881 6 6 4.0747 -1.5526 2.4371 7 1 3.5731 -2.5158 2.5305 8 8 3.7991 -0.7579 3.5923 9 6 5.5841 -1.7731 2.3182 10 7 6.0527 -2.5679 3.4562 11 6 6.0778 -3.9345 3.3729 12 1 5.1776 -4.4770 3.1245 13 6 7.2602 -4.6226 3.6077 14 7 7.2349 -5.9212 3.8200 15 14 8.8875 -3.7053 3.6224 16 1 9.2040 -3.2810 5.0098 17 1 9.9631 -4.5974 3.1201 18 1 8.7889 -2.5084 2.7490 19 6 6.5000 -1.9004 4.6812 20 6 7.0449 -2.7814 5.8071 21 6 5.6720 -2.1211 5.9487 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.6767 1.9564 0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6054 -1.7198 1.2953 30 1 1.7516 -0.1582 2.1370 31 1 3.9994 0.1676 1.1422 32 1 3.8533 -1.3939 0.3005 33 1 4.2147 0.1151 3.5775 34 1 6.0930 -0.8092 2.3142 35 1 5.8020 -2.3029 1.3908 36 1 8.0612 -6.4022 3.9838 37 1 6.9567 -0.9204 4.5426 38 1 7.0709 -3.8577 5.6363 39 1 7.8604 -2.3812 6.4095 40 1 5.5843 -1.2865 6.6442 41 1 4.7942 -2.7626 5.8711 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361270265.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:34 Heat of formation + Delta-G solvation = -45.600527 kcal Electronic energy + Delta-G solvation = -18239.507687 eV Core-core repulsion = 15540.423474 eV Total energy + Delta-G solvation = -2699.084213 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.62130 -38.38478 -36.83914 -34.69494 -33.61462 -32.04429 -28.73252 -27.96618 -26.15856 -24.01770 -23.17001 -22.14876 -21.64385 -20.71144 -18.78559 -17.36604 -16.93413 -16.60091 -16.26235 -15.72083 -15.57510 -15.22039 -14.94222 -14.43076 -14.25431 -13.83818 -13.57987 -13.32562 -13.03470 -12.97881 -12.59773 -12.48150 -12.12629 -12.11178 -12.05122 -11.84678 -11.74341 -11.65230 -11.39329 -11.31924 -11.19822 -10.82725 -10.74644 -10.40261 -8.32531 -8.07453 -5.85620 1.43451 1.44657 1.57819 2.46978 3.02951 3.18045 3.45819 3.74871 3.89570 4.02482 4.10003 4.27243 4.33579 4.38765 4.41795 4.50376 4.57312 4.59438 4.82460 4.85918 4.90574 4.95082 4.98016 4.99081 5.05485 5.09978 5.11461 5.22078 5.29669 5.37773 5.40287 5.43823 5.58419 5.59698 5.61952 5.99476 6.27730 7.11771 7.15928 7.61547 8.12769 8.96499 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034681 B = 0.005677 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.162956 B = 4931.362059 C = 5154.277614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.104 4.104 5 C -0.138 4.138 6 C 0.101 3.899 7 H 0.051 0.949 8 O -0.563 6.563 9 C 0.117 3.883 10 N -0.580 5.580 11 C -0.275 4.275 12 H 0.015 0.985 13 C 0.010 3.990 14 N -0.949 5.949 15 Si 0.950 3.050 16 H -0.251 1.251 17 H -0.315 1.315 18 H -0.260 1.260 19 C 0.115 3.885 20 C -0.221 4.221 21 C -0.181 4.181 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.047 0.953 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.040 0.960 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.376 0.624 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.264 0.736 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.543 16.813 -5.511 18.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.142 4.142 5 C -0.176 4.176 6 C 0.040 3.960 7 H 0.069 0.931 8 O -0.368 6.368 9 C -0.008 4.008 10 N -0.300 5.300 11 C -0.405 4.405 12 H 0.033 0.967 13 C -0.188 4.188 14 N -0.591 5.591 15 Si 0.776 3.224 16 H -0.175 1.175 17 H -0.243 1.243 18 H -0.184 1.184 19 C 0.008 3.992 20 C -0.259 4.259 21 C -0.222 4.222 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.224 0.776 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.801 16.139 -5.349 18.312 hybrid contribution 0.886 -0.392 -0.005 0.969 sum -5.914 15.747 -5.354 17.653 Atomic orbital electron populations 1.21838 0.95061 1.01496 1.02010 1.21134 0.95916 0.96908 0.97591 1.21859 1.01324 0.95149 1.01863 1.21505 0.94864 0.99611 0.98203 1.22214 0.96438 1.01496 0.97462 1.22290 0.95664 0.92889 0.85179 0.93083 1.86582 1.75912 1.31228 1.43107 1.21816 0.93748 0.95350 0.89887 1.43503 1.75135 1.01485 1.09895 1.18236 0.92918 0.82094 1.47218 0.96742 1.26487 1.01790 0.95249 0.95284 1.70003 1.28634 1.09873 1.50578 0.85758 0.78563 0.78332 0.79760 1.17520 1.24348 1.18376 1.21461 0.99980 0.95482 0.82314 1.23463 0.97910 0.99956 1.04571 1.23118 0.93016 1.02443 1.03607 0.92758 0.91814 0.93342 0.91580 0.92709 0.92244 0.92185 0.94085 0.92037 0.89635 0.91540 0.77599 0.91193 0.93174 0.92687 0.86346 0.90578 0.88401 0.87611 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.19 71.98 0.66 -1.90 16 2 C -0.10 -1.84 2.92 -10.79 -0.03 -1.87 16 3 C -0.14 -2.33 8.95 71.98 0.64 -1.68 16 4 C -0.10 -2.47 4.58 30.59 0.14 -2.33 16 5 C -0.14 -3.40 4.65 30.59 0.14 -3.25 16 6 C 0.10 3.36 3.21 30.60 0.10 3.45 16 7 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 8 O -0.56 -17.84 12.45 -148.98 -1.85 -19.69 16 9 C 0.12 4.34 5.37 86.38 0.46 4.81 16 10 N -0.58 -26.82 2.02 -678.02 -1.37 -28.19 16 11 C -0.27 -15.74 9.18 84.03 0.77 -14.97 16 12 H 0.01 0.98 8.06 -2.91 -0.02 0.96 16 13 C 0.01 0.58 3.75 84.86 0.32 0.90 16 14 N -0.95 -59.49 13.97 21.65 0.30 -59.19 16 15 Si 0.95 45.72 24.84 68.60 1.70 47.42 16 16 H -0.25 -11.19 5.79 99.48 0.58 -10.62 16 17 H -0.31 -15.53 7.11 99.48 0.71 -14.82 16 18 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 19 C 0.11 4.69 4.75 44.99 0.21 4.90 16 20 C -0.22 -9.62 6.67 30.59 0.20 -9.42 16 21 C -0.18 -7.27 10.36 30.59 0.32 -6.95 16 22 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.93 6.56 -2.39 -0.02 0.92 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.06 1.52 7.82 -2.39 -0.02 1.50 16 31 H 0.09 1.72 6.56 -2.39 -0.02 1.71 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.38 8.67 9.05 -74.06 -0.67 8.00 16 34 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 35 H 0.05 1.96 8.04 -2.38 -0.02 1.94 16 36 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 37 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 38 H 0.08 4.03 5.09 -2.38 -0.01 4.01 16 39 H 0.10 3.72 7.84 -2.39 -0.02 3.70 16 40 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 41 H 0.05 2.56 8.14 -2.38 -0.02 2.54 16 Total: -1.00 -67.27 319.96 2.90 -64.37 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.17 Total: 23.60 kcal Atomic # 6 Polarization: -32.27 SS G_CDS: 3.94 Total: -28.32 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -1.07 Total: -87.38 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -1.85 Total: -19.69 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.70 Total: 47.42 kcal Total: -67.27 2.90 -64.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361270265.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.772 kcal (2) G-P(sol) polarization free energy of solvation -67.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds