Wall clock time and date at job start Sun Mar 29 2020 22:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47126 * 2 1 4 4 C 1.52999 * 109.47058 * 120.00504 * 2 1 3 5 5 C 1.50707 * 109.46899 * 299.99103 * 4 2 1 6 6 H 1.07997 * 119.99672 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99859 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00152 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99929 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47327 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47458 * 119.99938 * 9 7 5 12 12 H 1.48507 * 109.47016 * 240.00214 * 9 7 5 13 13 C 1.52999 * 109.46584 * 240.00098 * 2 1 3 14 14 N 1.46894 * 109.47311 * 54.12118 * 13 2 1 15 15 C 1.47641 * 110.99946 * 215.27563 * 14 13 2 16 16 C 1.50896 * 108.76662 * 153.50848 * 15 14 13 17 17 C 1.53619 * 111.71543 * 91.01407 * 16 15 14 18 18 O 1.44084 * 112.55247 * 318.63433 * 17 16 15 19 19 C 1.40629 * 116.72900 * 318.11454 * 18 17 16 20 20 C 1.40441 * 111.00041 * 86.97973 * 14 13 2 21 21 H 1.08992 * 109.47483 * 59.99671 * 1 2 3 22 22 H 1.08999 * 109.47320 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46467 * 300.00080 * 1 2 3 24 24 H 1.08995 * 109.47234 * 72.52192 * 3 2 1 25 25 H 1.09000 * 109.46822 * 192.52321 * 3 2 1 26 26 H 1.08999 * 109.46832 * 312.51560 * 3 2 1 27 27 H 1.08999 * 109.47651 * 59.99473 * 4 2 1 28 28 H 1.08998 * 109.46841 * 180.02562 * 4 2 1 29 29 H 0.96998 * 120.00266 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.46947 * 174.12048 * 13 2 1 31 31 H 1.08999 * 109.47228 * 294.11667 * 13 2 1 32 32 H 1.09000 * 109.59097 * 273.29642 * 15 14 13 33 33 H 1.09000 * 109.58995 * 33.72800 * 15 14 13 34 34 H 1.09000 * 109.03451 * 330.43930 * 16 15 14 35 35 H 1.08996 * 108.97277 * 211.54755 * 16 15 14 36 36 H 1.09007 * 108.86913 * 197.84497 * 17 16 15 37 37 H 1.08998 * 108.86803 * 79.42727 * 17 16 15 38 38 H 1.09002 * 109.52671 * 334.00427 * 19 18 17 39 39 H 1.09003 * 109.52585 * 213.79848 * 19 18 17 40 40 H 1.08999 * 109.03482 * 308.86761 * 20 14 13 41 41 H 1.08998 * 109.04230 * 67.80276 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5378 -0.0109 2.4797 6 1 0.9167 0.8671 2.3806 7 6 1.8713 -0.4817 3.7320 8 7 2.6281 -1.5504 3.8526 9 14 1.2483 0.3985 5.2572 10 1 0.4230 1.5651 4.8531 11 1 0.4240 -0.5353 6.0656 12 1 2.4031 0.8660 6.0654 13 6 2.0399 -0.7212 -1.2493 14 7 1.4378 -0.1155 -2.4444 15 6 1.1737 -1.1355 -3.4786 16 6 0.0323 -0.6636 -4.3456 17 6 0.5325 0.1366 -5.5578 18 8 1.6053 1.0374 -5.2207 19 6 1.4771 1.7509 -4.0157 20 6 2.1973 0.9779 -2.8915 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 1.8702 1.8879 0.9802 25 1 3.1070 1.4506 -0.2228 26 1 1.5064 2.0165 -0.7575 27 1 1.6766 -1.7490 1.2492 28 1 3.1300 -0.7209 1.2494 29 1 2.8624 -1.8819 4.7335 30 1 3.1248 -0.6310 -1.3035 31 1 1.7651 -1.7748 -1.1982 32 1 2.0646 -1.2744 -4.0910 33 1 0.9049 -2.0782 -3.0019 34 1 -0.6283 -0.0325 -3.7511 35 1 -0.5268 -1.5303 -4.6980 36 1 -0.2973 0.7137 -5.9659 37 1 0.8832 -0.5598 -6.3195 38 1 0.4214 1.8577 -3.7660 39 1 1.9278 2.7371 -4.1265 40 1 2.3761 1.6526 -2.0542 41 1 3.1545 0.6163 -3.2670 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374302420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:38 Heat of formation + Delta-G solvation = -48.559763 kcal Electronic energy + Delta-G solvation = -18657.488795 eV Core-core repulsion = 15958.276260 eV Total energy + Delta-G solvation = -2699.212535 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.75355 -37.41783 -34.90832 -32.77641 -32.06648 -28.83488 -27.17790 -26.50134 -25.83639 -24.96844 -22.64974 -21.00028 -20.55332 -17.97589 -16.70459 -16.32448 -16.12387 -15.30732 -15.19106 -14.60649 -14.17914 -13.82947 -13.41644 -13.13260 -12.63370 -12.34023 -12.24006 -12.00577 -11.80361 -11.47621 -11.34840 -10.95334 -10.89601 -10.71177 -10.61950 -10.47769 -10.32465 -10.22781 -9.97240 -9.65643 -9.42325 -8.91585 -8.81500 -8.30188 -7.82298 -5.94652 -3.94390 3.33353 3.41264 3.44759 3.79980 4.19804 4.51041 4.78463 4.93328 5.12475 5.21654 5.38701 5.41113 5.43459 5.53966 5.61454 5.73903 5.78573 5.83959 5.95922 6.04599 6.05418 6.16045 6.22055 6.31815 6.37846 6.57569 6.74134 6.83686 6.88848 7.25094 7.27846 7.31567 7.34054 7.53359 7.71116 7.74477 7.89685 8.06121 8.51014 9.11309 9.68272 11.17105 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.050117 B = 0.005193 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.554118 B = 5390.336724 C = 5510.793810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.053 4.053 3 C -0.133 4.133 4 C 0.032 3.968 5 C -0.504 4.504 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.070 3.930 14 N -0.547 5.547 15 C 0.064 3.936 16 C -0.153 4.153 17 C 0.064 3.936 18 O -0.393 6.393 19 C 0.067 3.933 20 C 0.025 3.975 21 H 0.043 0.957 22 H 0.035 0.965 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.036 0.964 26 H 0.042 0.958 27 H 0.014 0.986 28 H 0.012 0.988 29 H 0.258 0.742 30 H 0.033 0.967 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.723 3.375 -16.041 16.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.054 4.054 3 C -0.190 4.190 4 C -0.005 4.005 5 C -0.543 4.543 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.056 4.056 14 N -0.270 5.270 15 C -0.063 4.063 16 C -0.192 4.192 17 C -0.012 4.012 18 O -0.312 6.312 19 C -0.011 4.011 20 C -0.104 4.104 21 H 0.062 0.938 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.032 0.968 28 H 0.030 0.970 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -3.912 3.469 -15.923 16.759 hybrid contribution 0.284 -0.065 0.919 0.965 sum -3.628 3.403 -15.004 15.807 Atomic orbital electron populations 1.21557 0.95136 1.00217 1.00046 1.20588 0.95779 0.94995 0.93996 1.21974 0.98618 0.96931 1.01450 1.19140 0.95926 0.95164 0.90317 1.21278 1.30544 1.11868 0.90584 0.92208 1.25015 0.95432 0.95133 0.99045 1.69975 1.37394 1.23302 1.23142 0.86619 0.78595 0.79748 0.83541 1.19769 1.21188 1.21211 1.22353 0.96069 0.97889 0.89303 1.59167 1.51741 1.09372 1.06765 1.21796 0.97104 0.94521 0.92904 1.22030 0.99392 1.00819 0.96919 1.22920 0.89862 0.91854 0.96554 1.87469 1.45697 1.57521 1.40518 1.22546 1.00617 0.94161 0.83748 1.22073 0.94560 0.94823 0.98979 0.93814 0.94556 0.92908 0.91528 0.94485 0.93968 0.96792 0.96958 0.93253 0.94849 0.91798 0.94360 0.90789 0.90221 0.90784 0.93495 0.90033 0.92217 0.89712 0.88034 0.95978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.17 7.96 37.16 0.30 -1.87 16 2 C -0.05 -1.06 0.61 -154.51 -0.09 -1.15 16 3 C -0.13 -2.49 6.88 37.16 0.26 -2.23 16 4 C 0.03 0.81 4.04 -27.88 -0.11 0.69 16 5 C -0.50 -13.78 7.48 -34.44 -0.26 -14.04 16 6 H 0.06 1.60 5.76 -52.49 -0.30 1.29 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 9 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.07 1.23 4.27 -3.83 -0.02 1.22 16 14 N -0.55 -8.14 2.91 -239.58 -0.70 -8.84 16 15 C 0.06 0.83 5.32 -4.47 -0.02 0.81 16 16 C -0.15 -1.67 5.41 -27.47 -0.15 -1.82 16 17 C 0.06 0.68 6.72 37.48 0.25 0.93 16 18 O -0.39 -5.14 10.13 -34.28 -0.35 -5.48 16 19 C 0.07 0.82 6.43 37.82 0.24 1.07 16 20 C 0.03 0.36 4.62 -6.50 -0.03 0.33 16 21 H 0.04 0.76 7.45 -51.93 -0.39 0.37 16 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 1.09 6.62 -51.93 -0.34 0.75 16 24 H 0.07 1.38 6.31 -51.93 -0.33 1.05 16 25 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 26 H 0.04 0.69 6.30 -51.93 -0.33 0.37 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.03 0.60 7.74 -51.93 -0.40 0.20 16 31 H 0.06 1.13 7.25 -51.93 -0.38 0.75 16 32 H 0.04 0.52 7.64 -51.93 -0.40 0.12 16 33 H 0.07 0.95 7.35 -51.93 -0.38 0.57 16 34 H 0.08 0.95 7.39 -51.93 -0.38 0.57 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.73 7.11 -51.93 -0.37 0.36 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.10 1.48 3.96 -51.93 -0.21 1.27 16 41 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 LS Contribution 304.31 15.07 4.59 4.59 Total: -1.00 -29.46 304.31 -7.59 -37.06 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -7.12 Total: -3.10 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 0.27 Total: -14.63 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.04 Total: -35.01 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.35 Total: -5.48 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.46 -7.59 -37.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374302420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.504 kcal (2) G-P(sol) polarization free energy of solvation -29.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds