Wall clock time and date at job start Sun Mar 29 2020 22:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47126 * 2 1 4 4 C 1.52999 * 109.47058 * 120.00504 * 2 1 3 5 5 C 1.50707 * 109.46899 * 299.99103 * 4 2 1 6 6 H 1.07997 * 119.99672 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99859 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00152 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99929 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47327 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47458 * 119.99938 * 9 7 5 12 12 H 1.48507 * 109.47016 * 240.00214 * 9 7 5 13 13 C 1.52999 * 109.46584 * 240.00098 * 2 1 3 14 14 N 1.46894 * 109.47311 * 54.12118 * 13 2 1 15 15 C 1.47641 * 110.99946 * 215.27563 * 14 13 2 16 16 C 1.50896 * 108.76662 * 153.50848 * 15 14 13 17 17 C 1.53619 * 111.71543 * 91.01407 * 16 15 14 18 18 O 1.44084 * 112.55247 * 318.63433 * 17 16 15 19 19 C 1.40629 * 116.72900 * 318.11454 * 18 17 16 20 20 C 1.40441 * 111.00041 * 86.97973 * 14 13 2 21 21 H 1.08992 * 109.47483 * 59.99671 * 1 2 3 22 22 H 1.08999 * 109.47320 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46467 * 300.00080 * 1 2 3 24 24 H 1.08995 * 109.47234 * 72.52192 * 3 2 1 25 25 H 1.09000 * 109.46822 * 192.52321 * 3 2 1 26 26 H 1.08999 * 109.46832 * 312.51560 * 3 2 1 27 27 H 1.08999 * 109.47651 * 59.99473 * 4 2 1 28 28 H 1.08998 * 109.46841 * 180.02562 * 4 2 1 29 29 H 0.96998 * 120.00266 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.46947 * 174.12048 * 13 2 1 31 31 H 1.08999 * 109.47228 * 294.11667 * 13 2 1 32 32 H 1.09000 * 109.59097 * 273.29642 * 15 14 13 33 33 H 1.09000 * 109.58995 * 33.72800 * 15 14 13 34 34 H 1.09000 * 109.03451 * 330.43930 * 16 15 14 35 35 H 1.08996 * 108.97277 * 211.54755 * 16 15 14 36 36 H 1.09007 * 108.86913 * 197.84497 * 17 16 15 37 37 H 1.08998 * 108.86803 * 79.42727 * 17 16 15 38 38 H 1.09002 * 109.52671 * 334.00427 * 19 18 17 39 39 H 1.09003 * 109.52585 * 213.79848 * 19 18 17 40 40 H 1.08999 * 109.03482 * 308.86761 * 20 14 13 41 41 H 1.08998 * 109.04230 * 67.80276 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5378 -0.0109 2.4797 6 1 0.9167 0.8671 2.3806 7 6 1.8713 -0.4817 3.7320 8 7 2.6281 -1.5504 3.8526 9 14 1.2483 0.3985 5.2572 10 1 0.4230 1.5651 4.8531 11 1 0.4240 -0.5353 6.0656 12 1 2.4031 0.8660 6.0654 13 6 2.0399 -0.7212 -1.2493 14 7 1.4378 -0.1155 -2.4444 15 6 1.1737 -1.1355 -3.4786 16 6 0.0323 -0.6636 -4.3456 17 6 0.5325 0.1366 -5.5578 18 8 1.6053 1.0374 -5.2207 19 6 1.4771 1.7509 -4.0157 20 6 2.1973 0.9779 -2.8915 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 1.8702 1.8879 0.9802 25 1 3.1070 1.4506 -0.2228 26 1 1.5064 2.0165 -0.7575 27 1 1.6766 -1.7490 1.2492 28 1 3.1300 -0.7209 1.2494 29 1 2.8624 -1.8819 4.7335 30 1 3.1248 -0.6310 -1.3035 31 1 1.7651 -1.7748 -1.1982 32 1 2.0646 -1.2744 -4.0910 33 1 0.9049 -2.0782 -3.0019 34 1 -0.6283 -0.0325 -3.7511 35 1 -0.5268 -1.5303 -4.6980 36 1 -0.2973 0.7137 -5.9659 37 1 0.8832 -0.5598 -6.3195 38 1 0.4214 1.8577 -3.7660 39 1 1.9278 2.7371 -4.1265 40 1 2.3761 1.6526 -2.0542 41 1 3.1545 0.6163 -3.2670 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374302420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:38 Heat of formation + Delta-G solvation = -66.230618 kcal Electronic energy + Delta-G solvation = -18658.255061 eV Core-core repulsion = 15958.276260 eV Total energy + Delta-G solvation = -2699.978801 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.88574 -38.73237 -36.34426 -34.35670 -33.51255 -30.05704 -29.03166 -28.00705 -27.00648 -26.41069 -24.51158 -22.05614 -21.56387 -19.62098 -18.32930 -17.64138 -17.38562 -16.61078 -16.36398 -16.07322 -15.57235 -15.22758 -14.87352 -14.40802 -14.27318 -13.91096 -13.64269 -13.35033 -13.25152 -12.85075 -12.67091 -12.63536 -12.35256 -12.24442 -12.12612 -11.98696 -11.84596 -11.68515 -11.36858 -11.26221 -10.84421 -10.71672 -10.49834 -10.29807 -9.08236 -8.12928 -6.19610 1.40768 1.41883 1.54030 2.44540 2.89162 3.06464 3.21146 3.90078 3.96291 4.11743 4.14801 4.28002 4.32811 4.43978 4.46302 4.51731 4.64769 4.70406 4.79395 4.84631 4.86675 4.93440 5.00477 5.09536 5.09975 5.15885 5.24327 5.27348 5.34896 5.54398 5.56995 5.63678 5.70043 5.90359 5.95052 6.16517 6.38259 6.42187 6.58896 6.95677 7.47613 8.99676 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.050117 B = 0.005193 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.554118 B = 5390.336724 C = 5510.793810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.049 4.049 3 C -0.124 4.124 4 C 0.038 3.962 5 C -0.510 4.510 6 H 0.066 0.934 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.956 3.044 10 H -0.260 1.260 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.080 3.920 14 N -0.543 5.543 15 C 0.062 3.938 16 C -0.146 4.146 17 C 0.060 3.940 18 O -0.410 6.410 19 C 0.073 3.927 20 C 0.024 3.976 21 H 0.068 0.932 22 H 0.028 0.972 23 H 0.036 0.964 24 H 0.044 0.956 25 H 0.037 0.963 26 H 0.070 0.930 27 H -0.016 1.016 28 H -0.018 1.018 29 H 0.259 0.741 30 H 0.023 0.977 31 H 0.057 0.943 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.128 4.683 -17.306 18.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.050 4.050 3 C -0.181 4.181 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.084 0.916 7 C -0.201 4.201 8 N -0.581 5.581 9 Si 0.781 3.219 10 H -0.184 1.184 11 H -0.209 1.209 12 H -0.209 1.209 13 C -0.047 4.047 14 N -0.267 5.267 15 C -0.065 4.065 16 C -0.184 4.184 17 C -0.016 4.016 18 O -0.330 6.330 19 C -0.004 4.004 20 C -0.105 4.105 21 H 0.086 0.914 22 H 0.048 0.952 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.003 0.997 28 H 0.000 1.000 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -5.329 4.788 -17.211 18.643 hybrid contribution 0.747 -0.523 1.256 1.552 sum -4.582 4.265 -15.955 17.140 Atomic orbital electron populations 1.21444 0.94179 0.99873 1.00339 1.20450 0.96392 0.95448 0.92678 1.21883 0.99075 0.96014 1.01123 1.19027 0.93895 0.94143 0.92854 1.21640 1.29990 1.11844 0.91379 0.91556 1.25912 0.95730 0.95910 1.02559 1.70115 1.38968 1.25052 1.23931 0.85530 0.78110 0.78838 0.79391 1.18395 1.20864 1.20896 1.22090 0.95467 0.97376 0.89793 1.59171 1.51126 1.09898 1.06504 1.21885 0.97906 0.94128 0.92574 1.21970 0.98271 1.01642 0.96561 1.23099 0.89933 0.91961 0.96572 1.87454 1.46987 1.58014 1.40519 1.22523 1.00725 0.94354 0.82837 1.22114 0.94330 0.94525 0.99568 0.91351 0.95246 0.94539 0.93657 0.94426 0.91088 0.99734 0.99993 0.93213 0.95871 0.92401 0.94835 0.90865 0.90872 0.88541 0.91832 0.88757 0.91661 0.88057 0.88512 0.97249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.80 7.96 71.98 0.57 -3.23 16 2 C -0.05 -1.96 0.61 -52.18 -0.03 -1.99 16 3 C -0.12 -4.56 6.88 71.98 0.50 -4.06 16 4 C 0.04 2.00 4.04 29.85 0.12 2.12 16 5 C -0.51 -28.31 7.48 25.60 0.19 -28.12 16 6 H 0.07 3.53 5.76 -2.91 -0.02 3.52 16 7 C 0.00 -0.27 5.46 84.66 0.46 0.20 16 8 N -0.94 -57.69 13.29 21.45 0.28 -57.41 16 9 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 10 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 C 0.08 2.81 4.27 86.30 0.37 3.18 16 14 N -0.54 -15.40 2.91 -911.89 -2.66 -18.06 16 15 C 0.06 1.51 5.32 85.48 0.45 1.96 16 16 C -0.15 -2.76 5.41 30.12 0.16 -2.59 16 17 C 0.06 1.07 6.72 72.19 0.48 1.56 16 18 O -0.41 -9.66 10.13 -145.57 -1.47 -11.13 16 19 C 0.07 1.61 6.43 72.41 0.47 2.07 16 20 C 0.02 0.64 4.62 87.91 0.41 1.05 16 21 H 0.07 2.23 7.45 -2.39 -0.02 2.21 16 22 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.04 1.47 6.62 -2.38 -0.02 1.45 16 24 H 0.04 1.84 6.31 -2.39 -0.02 1.83 16 25 H 0.04 1.35 7.68 -2.39 -0.02 1.33 16 26 H 0.07 2.19 6.30 -2.39 -0.02 2.17 16 27 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 28 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 29 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 30 H 0.02 0.85 7.74 -2.39 -0.02 0.83 16 31 H 0.06 2.07 7.25 -2.39 -0.02 2.06 16 32 H 0.03 0.86 7.64 -2.39 -0.02 0.84 16 33 H 0.07 1.79 7.35 -2.39 -0.02 1.77 16 34 H 0.07 1.51 7.39 -2.39 -0.02 1.49 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.37 7.11 -2.39 -0.02 1.36 16 39 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.10 2.65 3.96 -2.39 -0.01 2.64 16 41 H 0.01 0.28 8.09 -2.39 -0.02 0.26 16 Total: -1.00 -63.77 304.31 3.32 -60.45 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 0.98 Total: 7.42 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 4.15 Total: -27.86 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -2.37 Total: -75.47 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -1.47 Total: -11.13 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -63.77 3.32 -60.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374302420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.778 kcal (2) G-P(sol) polarization free energy of solvation -63.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds