Wall clock time and date at job start Sun Mar 29 2020 22:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46876 * 2 1 4 4 C 1.52999 * 109.46963 * 119.99484 * 2 1 3 5 5 C 1.53006 * 110.27216 * 59.30604 * 4 2 1 6 6 O 1.42895 * 109.47036 * 180.02562 * 5 4 2 7 7 C 1.54599 * 110.31324 * 297.21681 * 4 2 1 8 8 C 1.55202 * 102.80084 * 219.05010 * 7 4 2 9 9 N 1.48533 * 103.23591 * 37.42773 * 8 7 4 10 10 C 1.46904 * 110.99766 * 200.25381 * 9 8 7 11 11 C 1.52999 * 109.47357 * 287.40372 * 10 9 8 12 12 C 1.50699 * 109.47296 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99831 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00109 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00137 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99952 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46984 * 59.99734 * 16 14 12 18 18 H 1.48496 * 109.47401 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46882 * 300.00238 * 16 14 12 20 20 C 1.47897 * 105.82353 * 320.77242 * 9 8 7 21 21 H 1.09006 * 109.47308 * 60.00425 * 1 2 3 22 22 H 1.09004 * 109.47079 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47859 * 299.99960 * 1 2 3 24 24 H 1.08995 * 109.47427 * 240.00205 * 2 1 3 25 25 H 1.09006 * 109.47146 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47042 * 299.99668 * 3 2 1 27 27 H 1.09007 * 109.47280 * 60.00187 * 3 2 1 28 28 H 1.09001 * 109.47002 * 299.99538 * 5 4 2 29 29 H 1.08993 * 109.46955 * 59.99975 * 5 4 2 30 30 H 0.96700 * 113.99916 * 179.97438 * 6 5 4 31 31 H 1.09003 * 110.71675 * 337.37826 * 7 4 2 32 32 H 1.08991 * 110.72681 * 100.66785 * 7 4 2 33 33 H 1.09002 * 110.67656 * 278.98715 * 8 7 4 34 34 H 1.08997 * 110.78130 * 155.92893 * 8 7 4 35 35 H 1.09000 * 109.46797 * 47.40143 * 10 9 8 36 36 H 1.09000 * 109.46607 * 167.40224 * 10 9 8 37 37 H 1.09001 * 109.46905 * 300.00206 * 11 10 9 38 38 H 1.08998 * 109.47344 * 59.99367 * 11 10 9 39 39 H 0.96994 * 119.99783 * 179.97438 * 15 14 12 40 40 H 1.08995 * 109.91507 * 265.97615 * 20 9 8 41 41 H 1.09001 * 109.91662 * 144.68706 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.5258 -2.1620 1.2767 6 8 2.0112 -2.8187 2.4493 7 6 1.5936 0.0320 2.5235 8 6 2.8371 -0.0841 3.4450 9 7 3.9747 0.0467 2.4990 10 6 5.2074 -0.5032 3.0788 11 6 5.7206 0.4368 4.1716 12 6 6.9854 -0.1270 4.7659 13 1 7.3832 -1.0624 4.4011 14 6 7.6348 0.5513 5.7755 15 7 7.1506 1.6907 6.2194 16 14 9.2022 -0.1479 6.5127 17 1 10.2316 -0.2823 5.4508 18 1 9.7004 0.7644 7.5732 19 1 8.9204 -1.4822 7.1005 20 6 3.5793 -0.7022 1.2865 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3635 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 0.4359 -2.1587 1.2874 29 1 1.8790 -2.6906 0.3913 30 1 1.7236 -3.7381 2.5327 31 1 1.3760 1.0761 2.2980 32 1 0.7296 -0.4541 2.9763 33 1 2.8591 -1.0544 3.9412 34 1 2.8517 0.7221 4.1783 35 1 5.0006 -1.4827 3.5099 36 1 5.9631 -0.6013 2.2995 37 1 5.9273 1.4164 3.7405 38 1 4.9648 0.5350 4.9508 39 1 7.6073 2.1677 6.9299 40 1 3.9621 -1.7214 1.3383 41 1 3.9660 -0.2021 0.3986 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377639831.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:00 Heat of formation + Delta-G solvation = -63.243123 kcal Electronic energy + Delta-G solvation = -18454.896669 eV Core-core repulsion = 15755.047415 eV Total energy + Delta-G solvation = -2699.849253 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.90543 -36.25315 -35.45209 -33.03115 -30.97979 -28.89749 -28.73069 -27.38329 -24.92064 -23.65214 -22.04663 -21.38451 -19.76422 -18.21659 -17.36523 -16.29451 -15.43982 -15.04761 -14.81350 -14.65625 -14.32370 -13.64868 -13.45032 -13.25827 -12.61768 -12.27755 -12.15085 -12.11964 -11.70714 -11.57065 -11.46551 -11.16732 -11.04113 -10.85688 -10.68498 -10.47502 -10.43758 -10.26000 -10.03036 -9.84723 -9.61918 -9.21638 -9.02676 -8.24698 -7.59013 -5.90955 -3.92864 3.38672 3.42482 3.45253 4.13301 4.50793 4.61230 4.71918 4.90146 4.99464 5.13539 5.26185 5.35951 5.42500 5.44643 5.54108 5.60771 5.66686 5.81214 5.85392 5.94304 5.98295 6.06765 6.12493 6.22678 6.31907 6.34442 6.46992 6.50721 6.63972 6.66745 6.70883 7.12912 7.61478 7.64181 7.69070 7.89774 8.02661 8.20746 8.54632 9.14631 9.70032 11.20538 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.039793 B = 0.005125 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.468448 B = 5462.207040 C = 5746.340315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.077 4.077 3 C -0.148 4.148 4 C -0.065 4.065 5 C 0.087 3.913 6 O -0.562 6.562 7 C -0.108 4.108 8 C 0.045 3.955 9 N -0.512 5.512 10 C 0.057 3.943 11 C 0.032 3.968 12 C -0.520 4.520 13 H 0.052 0.948 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.278 1.278 20 C 0.050 3.950 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.373 0.627 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.023 0.977 36 H 0.054 0.946 37 H 0.022 0.978 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.041 0.959 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.702 -5.828 -12.283 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 C -0.205 4.205 4 C -0.066 4.066 5 C 0.009 3.991 6 O -0.367 6.367 7 C -0.146 4.146 8 C -0.082 4.082 9 N -0.236 5.236 10 C -0.071 4.071 11 C -0.006 4.006 12 C -0.559 4.559 13 H 0.070 0.930 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.078 4.078 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.219 0.781 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.041 0.959 38 H 0.033 0.967 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.261 -4.549 -12.176 19.296 hybrid contribution 0.523 -1.851 0.528 1.995 sum -13.739 -6.400 -11.648 19.115 Atomic orbital electron populations 1.21928 0.95525 1.01361 1.01879 1.21012 0.95291 0.96896 0.96419 1.21920 1.02376 0.94871 1.01326 1.21484 0.96206 0.92882 0.95998 1.22247 0.96711 0.92938 0.87187 1.86615 1.76819 1.29133 1.44090 1.22637 0.97723 0.99976 0.94282 1.23152 0.89279 1.00738 0.95074 1.64860 1.03418 1.51162 1.04192 1.22451 0.89533 0.97096 0.97991 1.19011 0.95069 0.94646 0.91865 1.21192 1.09018 1.06960 1.18731 0.92977 1.24984 0.97568 0.94939 0.96799 1.69970 1.39848 1.15182 1.28369 0.86677 0.83760 0.78822 0.78824 1.20284 1.21307 1.20349 1.22846 0.92546 0.96940 0.95518 0.92852 0.92983 0.92288 0.91507 0.91423 0.93350 0.91906 0.93642 0.94150 0.78107 0.90690 0.91982 0.93199 0.90689 0.95904 0.92718 0.95931 0.96691 0.93046 0.94069 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.64 37.15 0.32 -1.02 16 2 C -0.08 -0.83 2.21 -90.62 -0.20 -1.03 16 3 C -0.15 -1.71 8.64 37.16 0.32 -1.39 16 4 C -0.07 -0.84 0.40 -153.15 -0.06 -0.90 16 5 C 0.09 0.97 5.35 37.16 0.20 1.17 16 6 O -0.56 -7.17 11.43 -35.23 -0.40 -7.57 16 7 C -0.11 -1.55 4.72 -24.72 -0.12 -1.66 16 8 C 0.05 0.84 5.59 -1.75 -0.01 0.83 16 9 N -0.51 -10.08 5.24 -230.28 -1.21 -11.29 16 10 C 0.06 1.30 4.64 -3.82 -0.02 1.28 16 11 C 0.03 0.87 5.06 -27.88 -0.14 0.73 16 12 C -0.52 -15.39 9.11 -34.44 -0.31 -15.70 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -27.76 13.29 55.43 0.74 -27.03 16 16 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C 0.05 0.80 5.17 -2.76 -0.01 0.79 16 21 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 22 H 0.05 0.42 6.48 -51.93 -0.34 0.09 16 23 H 0.06 0.55 7.26 -51.93 -0.38 0.17 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.89 6.44 -51.93 -0.33 0.56 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.77 5.99 -51.93 -0.31 0.46 16 28 H 0.05 0.44 6.50 -51.93 -0.34 0.10 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.37 3.00 9.12 45.56 0.42 3.41 16 31 H 0.07 1.04 5.52 -51.93 -0.29 0.75 16 32 H 0.06 0.82 7.85 -51.93 -0.41 0.42 16 33 H 0.05 0.98 6.92 -51.93 -0.36 0.62 16 34 H 0.07 1.48 7.80 -51.93 -0.40 1.08 16 35 H 0.02 0.54 7.83 -51.93 -0.41 0.13 16 36 H 0.05 1.24 8.08 -51.93 -0.42 0.82 16 37 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.01 0.43 7.36 -51.93 -0.38 0.05 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.04 0.70 6.98 -51.93 -0.36 0.34 16 41 H 0.07 1.08 6.32 -51.93 -0.33 0.76 16 LS Contribution 309.03 15.07 4.66 4.66 Total: -1.00 -32.40 309.03 -7.66 -40.07 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.29 Total: -0.84 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -0.13 Total: -15.28 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: -0.47 Total: -38.31 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.40 Total: -7.57 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.40 -7.66 -40.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377639831.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.176 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds