Wall clock time and date at job start Sun Mar 29 2020 22:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47096 * 2 1 4 4 C 1.53002 * 109.46844 * 119.99782 * 2 1 3 5 5 C 1.53011 * 110.36649 * 299.27374 * 4 2 1 6 6 O 1.42899 * 109.47147 * 181.48029 * 5 4 2 7 7 C 1.54257 * 110.32776 * 61.45228 * 4 2 1 8 8 C 1.54381 * 105.14978 * 118.84533 * 7 4 2 9 9 N 1.48720 * 104.51692 * 336.27274 * 8 7 4 10 10 C 1.46900 * 111.01831 * 158.96284 * 9 8 7 11 11 C 1.53001 * 109.46857 * 54.49058 * 10 9 8 12 12 C 1.50697 * 109.47186 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00260 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99836 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00317 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99849 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47254 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46961 * 120.00144 * 16 14 12 19 19 H 1.48495 * 109.47217 * 239.99942 * 16 14 12 20 20 C 1.48567 * 104.28820 * 39.36098 * 9 8 7 21 21 H 1.08993 * 109.47812 * 300.00574 * 1 2 3 22 22 H 1.09001 * 109.46984 * 60.01055 * 1 2 3 23 23 H 1.09006 * 109.46893 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47315 * 239.99442 * 2 1 3 25 25 H 1.09007 * 109.47553 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47072 * 299.99491 * 3 2 1 27 27 H 1.08996 * 109.47494 * 59.99551 * 3 2 1 28 28 H 1.09006 * 109.46907 * 301.47979 * 5 4 2 29 29 H 1.08998 * 109.47040 * 61.48115 * 5 4 2 30 30 H 0.96694 * 113.99963 * 179.97438 * 6 5 4 31 31 H 1.09002 * 110.32715 * 237.79589 * 7 4 2 32 32 H 1.08998 * 110.32251 * 359.90115 * 7 4 2 33 33 H 1.09004 * 110.40867 * 94.98012 * 8 7 4 34 34 H 1.08996 * 110.41187 * 217.42234 * 8 7 4 35 35 H 1.09003 * 109.47294 * 174.49077 * 10 9 8 36 36 H 1.09000 * 109.47223 * 294.49440 * 10 9 8 37 37 H 1.09003 * 109.47184 * 300.00087 * 11 10 9 38 38 H 1.09000 * 109.46892 * 60.00179 * 11 10 9 39 39 H 0.96998 * 120.00087 * 179.97438 * 15 14 12 40 40 H 1.08999 * 110.41133 * 201.79165 * 20 9 8 41 41 H 1.09004 * 110.50861 * 79.40616 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5561 -0.0055 2.5122 6 8 2.0710 -0.6739 3.6654 7 6 1.5668 -2.1894 1.2511 8 6 2.8613 -3.0305 1.2345 9 7 3.8853 -2.1270 0.6457 10 6 5.2415 -2.5635 1.0039 11 6 5.4297 -4.0269 0.5991 12 6 6.8207 -4.4749 0.9670 13 1 7.5023 -3.7851 1.4425 14 6 7.2230 -5.7659 0.6977 15 7 6.3930 -6.6062 0.1192 16 14 8.9475 -6.3211 1.1531 17 1 9.6788 -5.1950 1.7873 18 1 8.8662 -7.4571 2.1061 19 1 9.6681 -6.7529 -0.0714 20 6 3.5818 -0.7966 1.2332 21 1 -0.3634 0.5139 0.8898 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9562 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 1.9082 1.0261 2.5026 29 1 0.4666 -0.0172 2.5416 30 1 1.8042 -0.2733 4.5041 31 1 0.9899 -2.4002 2.1516 32 1 0.9698 -2.3959 0.3628 33 1 3.1432 -3.3144 2.2484 34 1 2.7310 -3.9164 0.6130 35 1 5.9719 -1.9453 0.4819 36 1 5.3832 -2.4631 2.0799 37 1 4.6993 -4.6451 1.1210 38 1 5.2880 -4.1273 -0.4770 39 1 6.6761 -7.5143 -0.0706 40 1 3.9947 -0.0029 0.6106 41 1 3.9765 -0.7277 2.2469 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377639832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:02 Heat of formation + Delta-G solvation = -64.965150 kcal Electronic energy + Delta-G solvation = -18368.141040 eV Core-core repulsion = 15668.217114 eV Total energy + Delta-G solvation = -2699.923926 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.84368 -36.42178 -35.41587 -33.08539 -31.16316 -29.10087 -28.45861 -26.97500 -25.36509 -23.84459 -21.81052 -21.63718 -19.47401 -18.13881 -17.58740 -16.34946 -15.44403 -15.19071 -14.73298 -14.39342 -14.25333 -13.91120 -13.38971 -13.16980 -12.92402 -12.38821 -12.25958 -12.12704 -11.85919 -11.65462 -11.53035 -11.11862 -10.93357 -10.84771 -10.66709 -10.50506 -10.45428 -10.16726 -10.04048 -9.81098 -9.76925 -9.21397 -9.03693 -8.29367 -7.69455 -5.94434 -3.96309 3.34690 3.41726 3.46309 4.17995 4.48496 4.63199 4.67141 4.88828 4.99663 5.17285 5.25296 5.39156 5.40297 5.41726 5.56844 5.59267 5.64776 5.73639 5.79941 5.85197 6.03661 6.08705 6.13278 6.20786 6.32328 6.35984 6.41803 6.44498 6.57276 6.62635 6.69262 7.03949 7.56824 7.60187 7.64406 7.82980 7.95606 8.14033 8.50496 9.11055 9.67029 11.17145 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.039779 B = 0.004923 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.728563 B = 5686.719914 C = 5771.269218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.079 4.079 3 C -0.152 4.152 4 C -0.055 4.055 5 C 0.085 3.915 6 O -0.566 6.566 7 C -0.110 4.110 8 C 0.043 3.957 9 N -0.510 5.510 10 C 0.052 3.948 11 C 0.025 3.975 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.041 3.959 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.373 0.627 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.021 0.979 37 H 0.017 0.983 38 H 0.023 0.977 39 H 0.259 0.741 40 H 0.073 0.927 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.902 15.077 3.164 20.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.097 4.097 3 C -0.209 4.209 4 C -0.056 4.056 5 C 0.007 3.993 6 O -0.370 6.370 7 C -0.148 4.148 8 C -0.085 4.085 9 N -0.234 5.234 10 C -0.075 4.075 11 C -0.012 4.012 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.087 4.087 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.103 0.897 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.219 0.781 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.036 0.964 38 H 0.041 0.959 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.649 14.516 2.048 19.363 hybrid contribution 0.806 -0.050 1.571 1.766 sum -11.843 14.467 3.619 19.043 Atomic orbital electron populations 1.21945 0.95610 1.01976 1.01237 1.21074 0.95108 0.95742 0.97783 1.21977 1.01648 0.96052 1.01232 1.21308 0.96043 0.95593 0.92623 1.22284 0.96528 0.94686 0.85820 1.86574 1.76648 1.57852 1.15933 1.22397 0.97870 0.93236 1.01316 1.22978 0.90749 0.96437 0.98374 1.65509 1.03758 1.01013 1.53128 1.22457 0.87602 1.00263 0.97174 1.19134 0.96496 0.88244 0.97366 1.21250 0.98674 0.96636 1.39237 0.92770 1.24992 0.97285 0.96782 0.95281 1.69983 1.35211 1.05524 1.42663 0.86549 0.84794 0.78606 0.78123 1.19778 1.21067 1.21000 1.23178 0.93386 0.93835 0.98348 0.93028 0.92840 0.92251 0.89661 0.92078 0.92804 0.92997 0.93674 0.93656 0.78078 0.91637 0.91439 0.93915 0.90237 0.92183 0.96090 0.96423 0.95859 0.93115 0.90913 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.64 37.16 0.32 -1.11 16 2 C -0.08 -0.89 2.12 -90.62 -0.19 -1.09 16 3 C -0.15 -1.50 8.63 37.15 0.32 -1.18 16 4 C -0.06 -0.73 0.33 -153.12 -0.05 -0.78 16 5 C 0.08 0.94 5.15 37.16 0.19 1.13 16 6 O -0.57 -6.98 12.09 -35.23 -0.43 -7.41 16 7 C -0.11 -1.63 5.52 -25.35 -0.14 -1.77 16 8 C 0.04 0.81 5.12 -2.09 -0.01 0.80 16 9 N -0.51 -10.09 5.49 -229.82 -1.26 -11.35 16 10 C 0.05 1.20 5.00 -3.82 -0.02 1.18 16 11 C 0.02 0.68 4.69 -27.88 -0.13 0.55 16 12 C -0.52 -15.28 9.11 -34.44 -0.31 -15.59 16 13 H 0.05 1.55 7.74 -52.48 -0.41 1.15 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.60 13.29 55.43 0.74 -26.86 16 16 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 17 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 C 0.04 0.66 5.32 -2.18 -0.01 0.65 16 21 H 0.05 0.44 6.56 -51.93 -0.34 0.10 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.58 6.59 -51.93 -0.34 0.24 16 24 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.06 0.65 6.26 -51.93 -0.33 0.33 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.46 6.46 -51.93 -0.34 0.12 16 28 H 0.05 0.45 6.43 -51.93 -0.33 0.11 16 29 H 0.05 0.44 6.62 -51.93 -0.34 0.09 16 30 H 0.37 2.78 9.12 45.56 0.42 3.19 16 31 H 0.06 0.93 7.45 -51.93 -0.39 0.55 16 32 H 0.07 0.93 6.49 -51.93 -0.34 0.60 16 33 H 0.04 0.87 8.00 -51.93 -0.42 0.46 16 34 H 0.08 1.60 7.68 -51.93 -0.40 1.20 16 35 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.02 0.49 7.88 -51.93 -0.41 0.08 16 37 H 0.02 0.50 6.84 -51.93 -0.36 0.15 16 38 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 40 H 0.07 1.12 5.96 -51.93 -0.31 0.81 16 41 H 0.05 0.85 6.79 -51.93 -0.35 0.49 16 LS Contribution 308.69 15.07 4.65 4.65 Total: -1.00 -32.31 308.69 -7.68 -39.99 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.22 Total: -0.61 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -0.13 Total: -15.60 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.52 Total: -38.21 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.43 Total: -7.41 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.31 -7.68 -39.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377639832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.979 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds