Wall clock time and date at job start Sun Mar 29 2020 22:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47096 * 2 1 4 4 C 1.53002 * 109.46844 * 119.99782 * 2 1 3 5 5 C 1.53011 * 110.36649 * 299.27374 * 4 2 1 6 6 O 1.42899 * 109.47147 * 181.48029 * 5 4 2 7 7 C 1.54257 * 110.32776 * 61.45228 * 4 2 1 8 8 C 1.54381 * 105.14978 * 118.84533 * 7 4 2 9 9 N 1.48720 * 104.51692 * 336.27274 * 8 7 4 10 10 C 1.46900 * 111.01831 * 158.96284 * 9 8 7 11 11 C 1.53001 * 109.46857 * 54.49058 * 10 9 8 12 12 C 1.50697 * 109.47186 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00260 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99836 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00317 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99849 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47254 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46961 * 120.00144 * 16 14 12 19 19 H 1.48495 * 109.47217 * 239.99942 * 16 14 12 20 20 C 1.48567 * 104.28820 * 39.36098 * 9 8 7 21 21 H 1.08993 * 109.47812 * 300.00574 * 1 2 3 22 22 H 1.09001 * 109.46984 * 60.01055 * 1 2 3 23 23 H 1.09006 * 109.46893 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47315 * 239.99442 * 2 1 3 25 25 H 1.09007 * 109.47553 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47072 * 299.99491 * 3 2 1 27 27 H 1.08996 * 109.47494 * 59.99551 * 3 2 1 28 28 H 1.09006 * 109.46907 * 301.47979 * 5 4 2 29 29 H 1.08998 * 109.47040 * 61.48115 * 5 4 2 30 30 H 0.96694 * 113.99963 * 179.97438 * 6 5 4 31 31 H 1.09002 * 110.32715 * 237.79589 * 7 4 2 32 32 H 1.08998 * 110.32251 * 359.90115 * 7 4 2 33 33 H 1.09004 * 110.40867 * 94.98012 * 8 7 4 34 34 H 1.08996 * 110.41187 * 217.42234 * 8 7 4 35 35 H 1.09003 * 109.47294 * 174.49077 * 10 9 8 36 36 H 1.09000 * 109.47223 * 294.49440 * 10 9 8 37 37 H 1.09003 * 109.47184 * 300.00087 * 11 10 9 38 38 H 1.09000 * 109.46892 * 60.00179 * 11 10 9 39 39 H 0.96998 * 120.00087 * 179.97438 * 15 14 12 40 40 H 1.08999 * 110.41133 * 201.79165 * 20 9 8 41 41 H 1.09004 * 110.50861 * 79.40616 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5561 -0.0055 2.5122 6 8 2.0710 -0.6739 3.6654 7 6 1.5668 -2.1894 1.2511 8 6 2.8613 -3.0305 1.2345 9 7 3.8853 -2.1270 0.6457 10 6 5.2415 -2.5635 1.0039 11 6 5.4297 -4.0269 0.5991 12 6 6.8207 -4.4749 0.9670 13 1 7.5023 -3.7851 1.4425 14 6 7.2230 -5.7659 0.6977 15 7 6.3930 -6.6062 0.1192 16 14 8.9475 -6.3211 1.1531 17 1 9.6788 -5.1950 1.7873 18 1 8.8662 -7.4571 2.1061 19 1 9.6681 -6.7529 -0.0714 20 6 3.5818 -0.7966 1.2332 21 1 -0.3634 0.5139 0.8898 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9562 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 1.9082 1.0261 2.5026 29 1 0.4666 -0.0172 2.5416 30 1 1.8042 -0.2733 4.5041 31 1 0.9899 -2.4002 2.1516 32 1 0.9698 -2.3959 0.3628 33 1 3.1432 -3.3144 2.2484 34 1 2.7310 -3.9164 0.6130 35 1 5.9719 -1.9453 0.4819 36 1 5.3832 -2.4631 2.0799 37 1 4.6993 -4.6451 1.1210 38 1 5.2880 -4.1273 -0.4770 39 1 6.6761 -7.5143 -0.0706 40 1 3.9947 -0.0029 0.6106 41 1 3.9765 -0.7277 2.2469 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377639832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:02 Heat of formation + Delta-G solvation = -89.010062 kcal Electronic energy + Delta-G solvation = -18369.183706 eV Core-core repulsion = 15668.217114 eV Total energy + Delta-G solvation = -2700.966592 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.03715 -37.70244 -36.48381 -35.14877 -32.80926 -30.62720 -29.80733 -27.91006 -26.86152 -25.42280 -23.44459 -22.87044 -21.21059 -19.19464 -18.58343 -18.47158 -16.79238 -16.59855 -16.41997 -15.69560 -15.57450 -15.16390 -14.70121 -14.37826 -14.26321 -13.94394 -13.84589 -13.44980 -12.94622 -12.90800 -12.75814 -12.65796 -12.56594 -12.34988 -12.30190 -12.04956 -11.82867 -11.44279 -11.39661 -11.32188 -11.11069 -10.95998 -10.65341 -10.58549 -9.35045 -8.22617 -6.34772 1.38059 1.39163 1.52751 2.38738 3.10351 3.17372 3.39222 3.54505 3.81328 3.96378 4.23142 4.30200 4.34661 4.38201 4.48766 4.50891 4.54666 4.67960 4.72065 4.79978 4.81411 4.89440 4.97871 5.02284 5.04865 5.09790 5.13260 5.18136 5.30224 5.39301 5.41743 5.57546 5.57707 5.60997 5.75458 5.98209 6.14340 6.29500 6.81463 6.99797 7.34464 8.90003 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.039779 B = 0.004923 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.728563 B = 5686.719914 C = 5771.269218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.149 4.149 4 C -0.051 4.051 5 C 0.087 3.913 6 O -0.593 6.593 7 C -0.101 4.101 8 C 0.041 3.959 9 N -0.520 5.520 10 C 0.069 3.931 11 C 0.036 3.964 12 C -0.547 4.547 13 H 0.058 0.942 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.970 3.030 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.275 1.275 20 C 0.041 3.959 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.394 0.606 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.020 0.980 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.015 0.985 37 H -0.007 1.007 38 H -0.008 1.008 39 H 0.265 0.735 40 H 0.083 0.917 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.336 16.851 3.842 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.095 4.095 3 C -0.206 4.206 4 C -0.051 4.051 5 C 0.009 3.991 6 O -0.402 6.402 7 C -0.139 4.139 8 C -0.087 4.087 9 N -0.244 5.244 10 C -0.059 4.059 11 C -0.001 4.001 12 C -0.585 4.585 13 H 0.077 0.923 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.794 3.206 17 H -0.186 1.186 18 H -0.202 1.202 19 H -0.200 1.200 20 C -0.087 4.087 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.243 0.757 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.033 0.967 37 H 0.011 0.989 38 H 0.010 0.990 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.100 16.317 2.740 21.104 hybrid contribution 0.909 -0.620 1.346 1.738 sum -12.191 15.697 4.086 20.291 Atomic orbital electron populations 1.21916 0.93706 1.02086 1.02668 1.21029 0.96648 0.96236 0.95582 1.21955 1.00884 0.95058 1.02724 1.21347 0.93446 0.95014 0.95311 1.22305 0.97735 0.94817 0.84193 1.86524 1.77293 1.58920 1.17413 1.22352 0.95557 0.93685 1.02269 1.22929 0.92956 0.96501 0.96297 1.65452 1.02210 1.02951 1.53740 1.22113 0.89848 0.97407 0.96523 1.18934 0.95432 0.90893 0.94876 1.21641 0.99568 0.97424 1.39873 0.92333 1.25996 1.02177 0.96695 0.94767 1.70118 1.37649 1.06077 1.43358 0.85334 0.78779 0.78359 0.78162 1.18611 1.20173 1.20038 1.23262 0.96164 0.91743 0.97499 0.91359 0.91681 0.92818 0.92019 0.93256 0.91581 0.91277 0.91895 0.91353 0.75677 0.90672 0.90440 0.96134 0.92699 0.91953 0.96706 0.98891 0.98987 0.92655 0.89850 0.94563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.64 71.98 0.62 -1.71 16 2 C -0.08 -1.58 2.12 -10.80 -0.02 -1.60 16 3 C -0.15 -2.53 8.63 71.98 0.62 -1.91 16 4 C -0.05 -1.26 0.33 -51.28 -0.02 -1.28 16 5 C 0.09 1.66 5.15 71.99 0.37 2.04 16 6 O -0.59 -13.47 12.09 -148.98 -1.80 -15.28 16 7 C -0.10 -2.93 5.52 31.49 0.17 -2.76 16 8 C 0.04 1.64 5.12 86.42 0.44 2.08 16 9 N -0.52 -21.23 5.49 -881.02 -4.83 -26.06 16 10 C 0.07 3.29 5.00 86.30 0.43 3.72 16 11 C 0.04 2.07 4.69 29.85 0.14 2.21 16 12 C -0.55 -33.01 9.11 25.60 0.23 -32.78 16 13 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 14 C 0.00 0.09 5.46 84.66 0.46 0.55 16 15 N -0.93 -58.90 13.29 21.45 0.28 -58.61 16 16 Si 0.97 45.80 29.54 68.60 2.03 47.83 16 17 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 20 C 0.04 1.32 5.32 86.45 0.46 1.78 16 21 H 0.07 0.87 6.56 -2.39 -0.02 0.85 16 22 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.05 0.92 6.59 -2.38 -0.02 0.90 16 24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.05 0.95 6.26 -2.38 -0.01 0.93 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 0.94 6.46 -2.39 -0.02 0.93 16 28 H 0.06 1.00 6.43 -2.38 -0.02 0.99 16 29 H 0.07 1.03 6.62 -2.39 -0.02 1.01 16 30 H 0.39 4.93 9.12 -74.06 -0.68 4.25 16 31 H 0.07 2.05 7.45 -2.39 -0.02 2.03 16 32 H 0.08 2.09 6.49 -2.39 -0.02 2.08 16 33 H 0.02 0.88 8.00 -2.38 -0.02 0.86 16 34 H 0.05 2.39 7.68 -2.39 -0.02 2.37 16 35 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.01 0.71 7.88 -2.39 -0.02 0.69 16 37 H -0.01 -0.45 6.84 -2.39 -0.02 -0.46 16 38 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 39 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 40 H 0.08 2.50 5.96 -2.39 -0.01 2.48 16 41 H 0.04 1.26 6.79 -2.39 -0.02 1.25 16 Total: -1.00 -71.49 308.69 -0.08 -71.57 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.33 Total: 10.18 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: 3.92 Total: -29.63 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -4.55 Total: -84.67 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -1.80 Total: -15.28 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -71.49 -0.08 -71.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377639832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.439 kcal (2) G-P(sol) polarization free energy of solvation -71.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds