Wall clock time and date at job start Sun Mar 29 2020 23:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46777 * 2 1 4 4 H 1.08996 * 109.47229 * 305.02442 * 3 2 1 5 5 C 1.50701 * 109.47142 * 185.02437 * 3 2 1 6 6 H 1.07995 * 120.00040 * 245.53431 * 5 3 2 7 7 C 1.37885 * 119.99572 * 65.52879 * 5 3 2 8 8 N 1.31509 * 119.99936 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99604 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46866 * 60.00550 * 9 7 5 11 11 H 1.48497 * 109.46782 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47068 * 300.00165 * 9 7 5 13 13 N 1.46898 * 109.47120 * 65.02818 * 3 2 1 14 14 C 1.46849 * 111.00205 * 42.29243 * 13 3 2 15 15 C 1.53036 * 109.52419 * 174.16401 * 14 13 3 16 16 C 1.53114 * 109.28171 * 59.17785 * 15 14 13 17 17 H 1.08995 * 109.52513 * 62.24654 * 16 15 14 18 18 O 1.42894 * 109.52590 * 182.44227 * 16 15 14 19 19 C 1.42897 * 114.00218 * 269.99974 * 18 16 15 20 20 C 1.53127 * 109.16196 * 302.34726 * 16 15 14 21 21 C 1.46853 * 110.99955 * 278.08369 * 13 3 2 22 22 H 1.08995 * 109.46197 * 65.82950 * 21 13 3 23 23 C 1.53008 * 109.45865 * 305.85501 * 21 13 3 24 24 H 1.09001 * 109.47508 * 40.00108 * 1 2 3 25 25 H 1.09003 * 109.47402 * 160.00506 * 1 2 3 26 26 H 1.09002 * 109.46968 * 280.00095 * 1 2 3 27 27 H 1.09000 * 109.47053 * 240.00393 * 2 1 3 28 28 H 1.08995 * 109.47173 * 120.00001 * 2 1 3 29 29 H 0.97010 * 119.99620 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.46117 * 54.14133 * 14 13 3 31 31 H 1.08996 * 109.45306 * 294.17285 * 14 13 3 32 32 H 1.08999 * 109.50297 * 179.12122 * 15 14 13 33 33 H 1.09003 * 109.49815 * 299.23736 * 15 14 13 34 34 H 1.09004 * 109.47257 * 59.99776 * 19 18 16 35 35 H 1.08996 * 109.47604 * 179.97438 * 19 18 16 36 36 H 1.09001 * 109.47063 * 299.99810 * 19 18 16 37 37 H 1.09003 * 109.50181 * 297.71473 * 20 16 15 38 38 H 1.08993 * 109.50473 * 177.59570 * 20 16 15 39 39 H 1.09001 * 109.47062 * 68.13466 * 23 21 13 40 40 H 1.09003 * 109.46524 * 188.13293 * 23 21 13 41 41 H 1.09000 * 109.47287 * 308.13323 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6049 1.9817 -0.8415 5 6 3.5418 1.4445 -0.1244 6 1 4.1506 1.8075 0.6903 7 6 4.1384 0.9826 -1.2785 8 7 3.3969 0.5410 -2.2707 9 14 6.0001 0.9857 -1.4331 10 1 6.5870 0.1401 -0.3626 11 1 6.3874 0.4442 -2.7605 12 1 6.5056 2.3756 -1.2992 13 7 1.6518 2.0991 1.2555 14 6 1.8480 1.2017 2.4012 15 6 1.5736 1.9631 3.7001 16 6 0.1367 2.4917 3.6823 17 1 -0.5591 1.6541 3.6359 18 8 -0.1073 3.2518 4.8674 19 6 -0.6117 2.4802 5.9593 20 6 -0.0551 3.3847 2.4532 21 6 0.2665 2.5821 1.1905 22 1 -0.4115 1.7317 1.1182 23 6 0.0956 3.4763 -0.0393 24 1 -0.3634 0.7872 -0.6606 25 1 -0.3634 -0.9657 -0.3514 26 1 -0.3633 0.1785 1.0121 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8167 0.2164 -3.0828 30 1 2.8749 0.8362 2.4045 31 1 1.1625 0.3580 2.3230 32 1 1.7041 1.2926 4.5495 33 1 2.2679 2.7990 3.7855 34 1 0.1075 1.7031 6.2179 35 1 -0.7701 3.1293 6.8204 36 1 -1.5570 2.0195 5.6724 37 1 0.6136 4.2430 2.5190 38 1 -1.0882 3.7298 2.4118 39 1 0.1817 2.8723 -0.9425 40 1 -0.8859 3.9495 -0.0107 41 1 0.8693 4.2441 -0.0406 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379602519.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:28 Heat of formation + Delta-G solvation = -43.622005 kcal Electronic energy + Delta-G solvation = -19074.650817 eV Core-core repulsion = 16375.652399 eV Total energy + Delta-G solvation = -2698.998418 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.43694 -37.40360 -33.95458 -31.97789 -31.73604 -29.96760 -27.45231 -26.25625 -26.07421 -23.39438 -22.69146 -20.83395 -19.81109 -18.69918 -16.29274 -16.26329 -15.50607 -15.16778 -14.86576 -14.56483 -14.06868 -13.49791 -13.35835 -12.92089 -12.57443 -12.25330 -11.98468 -11.64454 -11.45804 -11.31858 -11.21457 -11.14415 -10.82834 -10.78746 -10.60831 -10.45748 -10.35347 -10.14225 -10.05784 -9.67454 -9.33560 -9.24187 -8.82117 -8.27385 -6.98398 -5.97150 -3.98539 3.35591 3.39755 3.43283 3.90889 4.45176 4.89967 5.14912 5.19863 5.34761 5.36905 5.39508 5.48165 5.61405 5.64761 5.84557 5.90341 5.98477 6.01758 6.13026 6.13830 6.27743 6.28790 6.38838 6.42594 6.46356 6.63433 6.68660 6.76663 6.78689 6.94637 7.02766 7.27381 7.39316 7.53644 7.68631 7.90508 8.25511 8.44235 8.66735 9.08173 9.65622 11.10739 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030253 B = 0.007055 C = 0.006546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.311042 B = 3967.720337 C = 4276.329065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.149 4.149 3 C 0.211 3.789 4 H 0.054 0.946 5 C -0.494 4.494 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.522 5.522 14 C 0.065 3.935 15 C -0.137 4.137 16 C 0.090 3.910 17 H 0.051 0.949 18 O -0.388 6.388 19 C 0.032 3.968 20 C -0.105 4.105 21 C 0.066 3.934 22 H 0.050 0.950 23 C -0.142 4.142 24 H 0.049 0.951 25 H 0.032 0.968 26 H 0.039 0.961 27 H 0.087 0.913 28 H 0.039 0.961 29 H 0.260 0.740 30 H 0.080 0.920 31 H 0.027 0.973 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.044 0.956 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.955 1.511 9.721 12.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.189 4.189 3 C 0.105 3.895 4 H 0.071 0.929 5 C -0.533 4.533 6 H 0.078 0.922 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.247 5.247 14 C -0.064 4.064 15 C -0.175 4.175 16 C 0.033 3.967 17 H 0.069 0.931 18 O -0.307 6.307 19 C -0.064 4.064 20 C -0.143 4.143 21 C -0.042 4.042 22 H 0.067 0.933 23 C -0.199 4.199 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.105 0.895 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.594 2.049 9.596 12.407 hybrid contribution 0.442 -1.153 -0.179 1.248 sum -7.152 0.896 9.416 11.858 Atomic orbital electron populations 1.22160 0.99557 0.99873 0.99327 1.22235 0.91658 1.02642 1.02341 1.19503 0.95518 0.88382 0.86139 0.92876 1.21100 0.91023 1.40408 1.00758 0.92206 1.24916 0.97943 0.95638 0.95793 1.69906 1.34826 1.43247 1.05581 0.86636 0.85955 0.78318 0.76908 1.20485 1.21521 1.20315 1.62302 1.18560 1.39144 1.04721 1.21918 1.01542 0.93438 0.89503 1.22130 0.96764 1.00717 0.97897 1.22258 0.96031 0.93552 0.84859 0.93084 1.87902 1.85417 1.35874 1.21541 1.22709 0.97271 0.96367 0.90090 1.21711 1.01054 0.99121 0.92412 1.21856 0.91941 0.96823 0.93612 0.93252 1.21873 1.00315 1.00022 0.97731 0.93229 0.94859 0.94222 0.89486 0.94183 0.93065 0.90143 0.95508 0.92722 0.90624 0.94288 0.90144 0.94491 0.90645 0.92174 0.91718 0.93654 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.14 37.16 0.30 -2.62 16 2 C -0.15 -3.40 4.76 -26.73 -0.13 -3.53 16 3 C 0.21 5.05 1.62 -68.86 -0.11 4.94 16 4 H 0.05 1.39 5.26 -51.93 -0.27 1.12 16 5 C -0.49 -13.31 8.11 -34.44 -0.28 -13.58 16 6 H 0.06 1.64 7.72 -52.49 -0.41 1.23 16 7 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 8 N -0.90 -25.17 11.73 55.43 0.65 -24.52 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.52 -10.84 4.34 -220.13 -0.96 -11.80 16 14 C 0.06 1.22 4.10 -3.83 -0.02 1.21 16 15 C -0.14 -2.24 5.71 -26.65 -0.15 -2.39 16 16 C 0.09 1.39 2.68 -26.61 -0.07 1.32 16 17 H 0.05 0.75 7.79 -51.93 -0.40 0.35 16 18 O -0.39 -5.82 10.35 -35.23 -0.36 -6.18 16 19 C 0.03 0.36 10.82 101.05 1.09 1.45 16 20 C -0.10 -1.68 5.02 -26.65 -0.13 -1.82 16 21 C 0.07 1.19 1.78 -67.72 -0.12 1.07 16 22 H 0.05 0.88 4.18 -51.93 -0.22 0.67 16 23 C -0.14 -2.49 8.45 37.16 0.31 -2.17 16 24 H 0.05 0.95 6.50 -51.93 -0.34 0.61 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.70 5.13 -51.93 -0.27 0.44 16 27 H 0.09 2.25 6.43 -51.93 -0.33 1.92 16 28 H 0.04 0.90 6.14 -51.93 -0.32 0.58 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.08 1.66 7.51 -51.93 -0.39 1.27 16 31 H 0.03 0.50 5.37 -51.93 -0.28 0.22 16 32 H 0.05 0.79 7.94 -51.93 -0.41 0.38 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.04 0.41 7.94 -51.93 -0.41 0.00 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 1.23 5.59 -51.93 -0.29 0.94 16 40 H 0.04 0.66 8.13 -51.93 -0.42 0.24 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 300.64 15.07 4.53 4.53 Total: -1.00 -27.73 300.64 -7.41 -35.14 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.85 Total: 1.15 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 0.60 Total: -14.64 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: -0.31 Total: -36.32 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.36 Total: -6.18 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.73 -7.41 -35.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379602519.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.478 kcal (2) G-P(sol) polarization free energy of solvation -27.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds