Wall clock time and date at job start Sun Mar 29 2020 23:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47805 * 2 1 4 4 H 1.08999 * 109.47204 * 302.94734 * 3 2 1 5 5 C 1.50699 * 109.47290 * 182.94605 * 3 2 1 6 6 H 1.07999 * 119.99765 * 245.17108 * 5 3 2 7 7 C 1.37879 * 120.00030 * 65.17194 * 5 3 2 8 8 N 1.31512 * 119.99968 * 7.56033 * 7 5 3 9 9 Si 1.86799 * 119.99964 * 187.55888 * 7 5 3 10 10 H 1.48501 * 109.46899 * 84.98985 * 9 7 5 11 11 H 1.48502 * 109.47221 * 324.99115 * 9 7 5 12 12 H 1.48503 * 109.47151 * 204.99060 * 9 7 5 13 13 N 1.46898 * 109.47182 * 62.94357 * 3 2 1 14 14 C 1.46850 * 110.99956 * 63.62485 * 13 3 2 15 15 C 1.53032 * 109.52546 * 185.84455 * 14 13 3 16 16 C 1.53123 * 109.27427 * 300.81581 * 15 14 13 17 17 H 1.09000 * 109.52108 * 177.55660 * 16 15 14 18 18 O 1.42895 * 109.52820 * 297.68747 * 16 15 14 19 19 C 1.42901 * 114.00302 * 270.00259 * 18 16 15 20 20 C 1.53121 * 109.16111 * 57.65854 * 16 15 14 21 21 C 1.46843 * 111.00321 * 187.83292 * 13 3 2 22 22 H 1.09000 * 109.46207 * 294.18159 * 21 13 3 23 23 C 1.53006 * 109.45936 * 54.14686 * 21 13 3 24 24 H 1.09008 * 109.47254 * 59.99573 * 1 2 3 25 25 H 1.08992 * 109.47611 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47103 * 300.00472 * 1 2 3 27 27 H 1.09002 * 109.47103 * 239.99527 * 2 1 3 28 28 H 1.09008 * 109.47254 * 120.00427 * 2 1 3 29 29 H 0.97000 * 119.99785 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.46155 * 305.85649 * 14 13 3 31 31 H 1.08997 * 109.46295 * 65.83177 * 14 13 3 32 32 H 1.08999 * 109.50674 * 60.75742 * 15 14 13 33 33 H 1.09001 * 109.50478 * 180.84149 * 15 14 13 34 34 H 1.08994 * 109.47192 * 180.02562 * 19 18 16 35 35 H 1.09004 * 109.46564 * 299.99491 * 19 18 16 36 36 H 1.09003 * 109.47093 * 59.99437 * 19 18 16 37 37 H 1.09007 * 109.50270 * 62.28073 * 20 16 15 38 38 H 1.08994 * 109.50537 * 182.35987 * 20 16 15 39 39 H 1.09004 * 109.46941 * 52.53238 * 23 21 13 40 40 H 1.09003 * 109.47132 * 172.52933 * 23 21 13 41 41 H 1.09001 * 109.47271 * 292.52925 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6343 1.9713 -0.8624 5 6 3.5453 1.4429 -0.0730 6 1 4.1260 1.8212 0.7553 7 6 4.1811 0.9604 -1.1973 8 7 3.4798 0.6388 -2.2623 9 14 6.0387 0.7635 -1.2077 10 1 6.4007 -0.5484 -0.6135 11 1 6.6566 1.8546 -0.4121 12 1 6.5355 0.8278 -2.6057 13 7 1.6094 2.1141 1.2334 14 6 2.2079 1.4795 2.4147 15 6 1.6264 2.1083 3.6829 16 6 1.9214 3.6108 3.6831 17 1 1.4715 4.0702 4.5633 18 8 3.3348 3.8200 3.7050 19 6 3.8891 3.9089 5.0191 20 6 1.3293 4.2395 2.4187 21 6 1.9194 3.5487 1.1872 22 1 3.0006 3.6865 1.1766 23 6 1.3153 4.1602 -0.0787 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.9271 0.2990 -3.0531 30 1 1.9871 0.4121 2.4046 31 1 3.2877 1.6271 2.3985 32 1 0.5483 1.9491 3.7067 33 1 2.0817 1.6473 4.5594 34 1 4.9651 4.0682 4.9496 35 1 3.4321 4.7439 5.5503 36 1 3.6925 2.9831 5.5598 37 1 0.2465 4.1138 2.4226 38 1 1.5722 5.3017 2.3924 39 1 0.2564 3.9077 -0.1345 40 1 1.4293 5.2438 -0.0488 41 1 1.8298 3.7647 -0.9545 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379602520.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:30 Heat of formation + Delta-G solvation = -53.394615 kcal Electronic energy + Delta-G solvation = -19291.914553 eV Core-core repulsion = 16592.492363 eV Total energy + Delta-G solvation = -2699.422190 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.19390 -36.89085 -33.89668 -31.79537 -31.58592 -30.13113 -27.01089 -26.07301 -25.91168 -23.53066 -22.45790 -20.74709 -19.50277 -18.60658 -16.28983 -15.76960 -15.30001 -15.03947 -14.82303 -14.38910 -13.90679 -13.45850 -12.94027 -12.81751 -12.56650 -12.07831 -11.85326 -11.68227 -11.24194 -11.22219 -11.12133 -11.09349 -10.95487 -10.74135 -10.45965 -10.41018 -10.12500 -9.87502 -9.63061 -9.48153 -9.40498 -8.99441 -8.90855 -8.23649 -6.93934 -5.91515 -3.99668 3.33319 3.39858 3.43963 4.09413 4.48945 5.11810 5.17152 5.26317 5.34800 5.44991 5.47375 5.53099 5.78479 5.83794 6.02772 6.10659 6.17676 6.31326 6.33333 6.39742 6.41368 6.47334 6.48864 6.64984 6.66670 6.77320 7.00263 7.07607 7.12774 7.20928 7.24625 7.43584 7.54444 7.73793 7.80690 8.04882 8.29577 8.46452 8.60448 9.11935 9.66300 11.10189 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020051 B = 0.009715 C = 0.008057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.089061 B = 2881.476809 C = 3474.406791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.209 3.791 4 H 0.053 0.947 5 C -0.538 4.538 6 H 0.058 0.942 7 C 0.069 3.931 8 N -0.887 5.887 9 Si 0.881 3.119 10 H -0.281 1.281 11 H -0.276 1.276 12 H -0.288 1.288 13 N -0.530 5.530 14 C 0.066 3.934 15 C -0.138 4.138 16 C 0.090 3.910 17 H 0.048 0.952 18 O -0.375 6.375 19 C 0.033 3.967 20 C -0.107 4.107 21 C 0.094 3.906 22 H 0.051 0.949 23 C -0.141 4.141 24 H 0.039 0.961 25 H 0.023 0.977 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.259 0.741 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.036 0.964 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.050 0.950 40 H 0.040 0.960 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.961 4.823 10.516 12.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.103 3.897 4 H 0.070 0.930 5 C -0.577 4.577 6 H 0.076 0.924 7 C -0.133 4.133 8 N -0.526 5.526 9 Si 0.709 3.291 10 H -0.208 1.208 11 H -0.201 1.201 12 H -0.214 1.214 13 N -0.254 5.254 14 C -0.062 4.062 15 C -0.176 4.176 16 C 0.032 3.968 17 H 0.066 0.934 18 O -0.294 6.294 19 C -0.064 4.064 20 C -0.145 4.145 21 C -0.014 4.014 22 H 0.069 0.931 23 C -0.198 4.198 24 H 0.058 0.942 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.350 4.725 10.181 12.038 hybrid contribution 1.931 -0.189 0.204 1.951 sum -2.419 4.535 10.386 11.588 Atomic orbital electron populations 1.21697 0.98663 0.98307 1.00818 1.21539 0.92464 0.99615 1.00788 1.19344 0.92761 0.90516 0.87097 0.92976 1.21765 0.92858 1.41306 1.01768 0.92420 1.24889 0.97518 0.95527 0.95370 1.69944 1.35227 1.44371 1.03038 0.86789 0.86800 0.78545 0.76954 1.20762 1.20102 1.21442 1.62448 1.57977 1.01186 1.03836 1.21767 0.97700 0.97795 0.88978 1.22111 1.01313 0.95408 0.98762 1.22191 0.81192 0.95577 0.97831 0.93380 1.88027 1.21864 1.93241 1.26253 1.22700 0.99151 0.99176 0.85392 1.21779 0.99939 0.98676 0.94077 1.21208 0.98382 0.89265 0.92594 0.93101 1.21830 1.00824 0.98351 0.98806 0.94162 0.95765 0.93095 0.90887 0.94768 0.93079 0.91646 0.93786 0.91174 0.92828 0.90180 0.94774 0.94492 0.90737 0.92174 0.93055 0.94080 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.78 37.15 0.36 -2.41 16 2 C -0.11 -2.48 5.11 -26.74 -0.14 -2.62 16 3 C 0.21 5.10 1.29 -68.87 -0.09 5.01 16 4 H 0.05 1.40 5.90 -51.93 -0.31 1.10 16 5 C -0.54 -14.52 7.15 -34.44 -0.25 -14.77 16 6 H 0.06 1.62 5.86 -52.49 -0.31 1.31 16 7 C 0.07 1.91 5.21 -17.82 -0.09 1.82 16 8 N -0.89 -25.26 12.04 55.43 0.67 -24.59 16 9 Si 0.88 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 N -0.53 -11.13 3.82 -220.14 -0.84 -11.97 16 14 C 0.07 1.32 4.66 -3.83 -0.02 1.30 16 15 C -0.14 -2.21 5.79 -26.65 -0.15 -2.36 16 16 C 0.09 1.39 2.93 -26.60 -0.08 1.31 16 17 H 0.05 0.63 7.79 -51.93 -0.40 0.23 16 18 O -0.38 -6.38 9.22 -35.23 -0.32 -6.70 16 19 C 0.03 0.42 10.82 101.05 1.09 1.51 16 20 C -0.11 -1.73 5.10 -26.65 -0.14 -1.87 16 21 C 0.09 1.88 2.01 -67.72 -0.14 1.74 16 22 H 0.05 1.18 6.88 -51.93 -0.36 0.83 16 23 C -0.14 -2.67 8.52 37.16 0.32 -2.36 16 24 H 0.04 0.82 8.14 -51.92 -0.42 0.39 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.99 7.69 -51.93 -0.40 0.59 16 27 H 0.07 1.92 6.74 -51.93 -0.35 1.57 16 28 H 0.03 0.79 6.23 -51.92 -0.32 0.47 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.07 1.34 6.07 -51.93 -0.32 1.02 16 31 H 0.04 1.00 6.01 -51.93 -0.31 0.69 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.78 7.84 -51.93 -0.41 0.37 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.03 0.37 8.09 -51.93 -0.42 -0.05 16 36 H 0.04 0.43 7.84 -51.93 -0.41 0.03 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.67 8.13 -51.93 -0.42 0.25 16 41 H 0.07 1.52 6.61 -51.93 -0.34 1.17 16 LS Contribution 307.30 15.07 4.63 4.63 Total: -1.00 -28.28 307.30 -7.37 -35.65 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -7.17 Total: 0.07 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 0.69 Total: -13.70 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: -0.17 Total: -36.56 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.32 Total: -6.70 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.28 -7.37 -35.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379602520.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.742 kcal (2) G-P(sol) polarization free energy of solvation -28.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds