Wall clock time and date at job start Sun Mar 29 2020 23:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46880 * 2 1 4 4 H 1.08999 * 109.47502 * 304.55150 * 3 2 1 5 5 C 1.50701 * 109.46817 * 184.55268 * 3 2 1 6 6 H 1.07997 * 119.99822 * 245.55204 * 5 3 2 7 7 C 1.37872 * 120.00050 * 65.55873 * 5 3 2 8 8 N 1.31519 * 120.00148 * 196.60936 * 7 5 3 9 9 Si 1.86803 * 120.00103 * 16.60829 * 7 5 3 10 10 H 1.48501 * 109.47371 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47055 * 300.00401 * 9 7 5 12 12 H 1.48504 * 109.47082 * 60.00234 * 9 7 5 13 13 N 1.46906 * 109.46880 * 64.55577 * 3 2 1 14 14 C 1.46843 * 111.00191 * 63.50961 * 13 3 2 15 15 C 1.53037 * 109.52545 * 185.83843 * 14 13 3 16 16 C 1.53120 * 109.27376 * 300.82044 * 15 14 13 17 17 H 1.08991 * 109.52327 * 297.74536 * 16 15 14 18 18 O 1.42909 * 109.51827 * 177.55836 * 16 15 14 19 19 C 1.42898 * 113.99598 * 89.99857 * 18 16 15 20 20 C 1.53120 * 109.16088 * 57.65667 * 16 15 14 21 21 C 1.46843 * 110.99580 * 187.72114 * 13 3 2 22 22 H 1.09002 * 109.46391 * 294.17452 * 21 13 3 23 23 C 1.52993 * 109.46660 * 54.14408 * 21 13 3 24 24 H 1.09003 * 109.47464 * 60.00212 * 1 2 3 25 25 H 1.09003 * 109.47267 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47114 * 299.99878 * 1 2 3 27 27 H 1.08997 * 109.47211 * 240.00660 * 2 1 3 28 28 H 1.08992 * 109.47183 * 120.00201 * 2 1 3 29 29 H 0.96997 * 119.99911 * 354.93953 * 8 7 5 30 30 H 1.08999 * 109.46156 * 305.85633 * 14 13 3 31 31 H 1.09003 * 109.46032 * 65.82153 * 14 13 3 32 32 H 1.09000 * 109.49777 * 60.76033 * 15 14 13 33 33 H 1.08996 * 109.50507 * 180.84227 * 15 14 13 34 34 H 1.09000 * 109.47447 * 299.99740 * 19 18 16 35 35 H 1.09003 * 109.47064 * 60.00624 * 19 18 16 36 36 H 1.09006 * 109.46285 * 179.97438 * 19 18 16 37 37 H 1.09001 * 109.50290 * 62.28113 * 20 16 15 38 38 H 1.09005 * 109.49968 * 182.36117 * 20 16 15 39 39 H 1.09005 * 109.47123 * 52.93804 * 23 21 13 40 40 H 1.09007 * 109.47215 * 172.93984 * 23 21 13 41 41 H 1.09002 * 109.47045 * 292.93810 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6115 1.9794 -0.8464 5 6 3.5427 1.4440 -0.1128 6 1 4.1452 1.8090 0.7058 7 6 4.1483 0.9796 -1.2610 8 7 5.4269 0.6717 -1.2518 9 14 3.1528 0.7876 -2.8299 10 1 4.0297 0.2746 -3.9130 11 1 2.0421 -0.1704 -2.5973 12 1 2.5948 2.1054 -3.2265 13 7 1.6421 2.1025 1.2507 14 6 2.2694 1.4553 2.4100 15 6 1.7216 2.0724 3.6988 16 6 2.0191 3.5744 3.7063 17 1 3.0975 3.7322 3.6958 18 8 1.4601 4.1660 4.8809 19 6 2.3466 4.1828 6.0014 20 6 1.3958 4.2163 2.4637 21 6 1.9531 3.5371 1.2107 22 1 3.0339 3.6735 1.1738 23 6 1.3179 4.1619 -0.0331 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 5.9606 0.8401 -0.4595 30 1 2.0467 0.3884 2.3948 31 1 3.3488 1.6015 2.3674 32 1 0.6443 1.9145 3.7485 33 1 2.1985 1.6021 4.5588 34 1 2.6271 3.1613 6.2582 35 1 3.2409 4.7526 5.7488 36 1 1.8482 4.6478 6.8520 37 1 0.3133 4.0921 2.4941 38 1 1.6399 5.2785 2.4417 39 1 0.2560 3.9176 -0.0605 40 1 1.4409 5.2445 0.0010 41 1 1.8044 3.7690 -0.9259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379602521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:32 Heat of formation + Delta-G solvation = -54.557811 kcal Electronic energy + Delta-G solvation = -19089.457589 eV Core-core repulsion = 16389.984959 eV Total energy + Delta-G solvation = -2699.472630 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.28011 -37.31160 -34.20227 -32.06774 -31.86158 -30.34336 -27.30154 -26.26929 -26.04045 -23.10886 -22.37792 -20.93988 -19.85498 -18.86583 -17.21610 -16.24476 -15.63648 -15.05429 -14.88708 -14.37184 -14.05891 -13.39067 -13.29203 -13.20158 -12.64295 -12.43368 -12.22138 -11.81400 -11.57482 -11.48197 -11.32223 -11.18772 -10.91746 -10.72019 -10.50063 -10.40995 -10.29254 -10.09224 -9.86152 -9.63896 -9.50307 -9.11809 -8.92602 -8.35436 -7.26442 -6.37295 -4.10173 3.37500 3.40530 3.57995 3.90325 4.46051 4.82013 5.13175 5.17775 5.23950 5.36885 5.40386 5.50079 5.62418 5.66361 5.86597 5.91955 6.00790 6.04377 6.12884 6.15331 6.25694 6.31812 6.32213 6.37009 6.44233 6.51303 6.73415 6.78693 6.79366 6.84241 6.89676 7.05185 7.26477 7.31931 7.38962 7.91349 8.13053 8.23846 8.35160 8.91234 9.59707 10.91460 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029023 B = 0.007605 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.528217 B = 3680.817374 C = 3800.794887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C 0.183 3.817 4 H 0.038 0.962 5 C -0.625 4.625 6 H 0.057 0.943 7 C 0.034 3.966 8 N -0.907 5.907 9 Si 1.041 2.959 10 H -0.287 1.287 11 H -0.270 1.270 12 H -0.283 1.283 13 N -0.522 5.522 14 C 0.065 3.935 15 C -0.135 4.135 16 C 0.089 3.911 17 H 0.054 0.946 18 O -0.389 6.389 19 C 0.032 3.968 20 C -0.104 4.104 21 C 0.092 3.908 22 H 0.045 0.955 23 C -0.140 4.140 24 H 0.040 0.960 25 H 0.031 0.969 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.266 0.734 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.047 0.953 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.702 4.674 8.002 12.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 C 0.076 3.924 4 H 0.056 0.944 5 C -0.663 4.663 6 H 0.075 0.925 7 C -0.172 4.172 8 N -0.541 5.541 9 Si 0.869 3.131 10 H -0.213 1.213 11 H -0.196 1.196 12 H -0.209 1.209 13 N -0.246 5.246 14 C -0.064 4.064 15 C -0.173 4.173 16 C 0.032 3.968 17 H 0.072 0.928 18 O -0.308 6.308 19 C -0.064 4.064 20 C -0.142 4.142 21 C -0.017 4.017 22 H 0.063 0.937 23 C -0.198 4.198 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.299 4.171 6.477 11.323 hybrid contribution 1.306 0.463 1.647 2.152 sum -6.993 4.634 8.124 11.678 Atomic orbital electron populations 1.21739 0.97841 0.99116 1.01336 1.22032 0.93494 0.99349 1.01297 1.19642 0.94581 0.90342 0.87867 0.94406 1.22531 0.91806 1.48218 1.03752 0.92517 1.25692 0.97300 0.92602 1.01561 1.70860 1.08129 1.41544 1.33555 0.84112 0.75635 0.77285 0.76024 1.21340 1.19618 1.20948 1.62332 1.57550 1.01051 1.03687 1.21845 0.97034 0.98537 0.88958 1.22113 1.02321 0.94926 0.97969 1.22256 0.96614 0.92917 0.85001 0.92832 1.87887 1.40909 1.81532 1.20500 1.22714 0.94053 1.00262 0.89415 1.21718 1.01574 0.98556 0.92400 1.21282 0.97987 0.89278 0.93118 0.93743 1.21808 1.00905 0.98847 0.98211 0.94114 0.95010 0.92318 0.92181 0.93084 0.92445 0.90883 0.94391 0.90957 0.92672 0.94291 0.94403 0.90135 0.90839 0.92010 0.92552 0.93427 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.80 37.16 0.36 -2.24 16 2 C -0.12 -2.66 4.95 -26.73 -0.13 -2.79 16 3 C 0.18 4.15 0.98 -68.86 -0.07 4.08 16 4 H 0.04 0.88 4.61 -51.93 -0.24 0.65 16 5 C -0.62 -16.58 7.49 -34.44 -0.26 -16.84 16 6 H 0.06 1.64 6.10 -52.49 -0.32 1.32 16 7 C 0.03 0.95 5.32 -17.82 -0.09 0.86 16 8 N -0.91 -27.31 13.70 55.43 0.76 -26.55 16 9 Si 1.04 24.70 26.29 -169.99 -4.47 20.23 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -5.94 5.66 56.52 0.32 -5.62 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.52 -10.46 3.89 -220.14 -0.86 -11.32 16 14 C 0.06 1.25 4.80 -3.84 -0.02 1.23 16 15 C -0.14 -2.21 5.71 -26.65 -0.15 -2.36 16 16 C 0.09 1.43 2.68 -26.61 -0.07 1.36 16 17 H 0.05 0.87 7.79 -51.93 -0.40 0.47 16 18 O -0.39 -5.94 10.35 -35.23 -0.36 -6.31 16 19 C 0.03 0.38 10.82 101.05 1.09 1.47 16 20 C -0.10 -1.71 5.02 -26.65 -0.13 -1.84 16 21 C 0.09 1.74 2.14 -67.73 -0.15 1.60 16 22 H 0.04 0.96 7.26 -51.93 -0.38 0.58 16 23 C -0.14 -2.47 8.53 37.15 0.32 -2.15 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 1.05 7.74 -51.93 -0.40 0.65 16 27 H 0.06 1.37 4.74 -51.93 -0.25 1.12 16 28 H 0.05 1.10 6.15 -51.93 -0.32 0.78 16 29 H 0.27 8.02 8.73 -40.82 -0.36 7.66 16 30 H 0.07 1.43 6.04 -51.93 -0.31 1.12 16 31 H 0.04 0.83 6.40 -51.93 -0.33 0.50 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 0.82 7.94 -51.93 -0.41 0.41 16 34 H 0.04 0.43 7.94 -51.93 -0.41 0.02 16 35 H 0.04 0.41 8.09 -51.93 -0.42 -0.01 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.30 6.59 -51.93 -0.34 0.96 16 LS Contribution 303.58 15.07 4.57 4.57 Total: -1.00 -28.51 303.58 -6.81 -35.33 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.16 Total: 1.67 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 0.70 Total: -17.62 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: -0.10 Total: -37.87 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.36 Total: -6.31 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -4.47 Total: 20.23 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.51 -6.81 -35.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379602521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.232 kcal (2) G-P(sol) polarization free energy of solvation -28.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds