Wall clock time and date at job start Sun Mar 29 2020 23:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46880 * 2 1 4 4 H 1.08999 * 109.47502 * 304.55150 * 3 2 1 5 5 C 1.50701 * 109.46817 * 184.55268 * 3 2 1 6 6 H 1.07997 * 119.99822 * 245.55204 * 5 3 2 7 7 C 1.37872 * 120.00050 * 65.55873 * 5 3 2 8 8 N 1.31519 * 120.00148 * 196.60936 * 7 5 3 9 9 Si 1.86803 * 120.00103 * 16.60829 * 7 5 3 10 10 H 1.48501 * 109.47371 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47055 * 300.00401 * 9 7 5 12 12 H 1.48504 * 109.47082 * 60.00234 * 9 7 5 13 13 N 1.46906 * 109.46880 * 64.55577 * 3 2 1 14 14 C 1.46843 * 111.00191 * 63.50961 * 13 3 2 15 15 C 1.53037 * 109.52545 * 185.83843 * 14 13 3 16 16 C 1.53120 * 109.27376 * 300.82044 * 15 14 13 17 17 H 1.08991 * 109.52327 * 297.74536 * 16 15 14 18 18 O 1.42909 * 109.51827 * 177.55836 * 16 15 14 19 19 C 1.42898 * 113.99598 * 89.99857 * 18 16 15 20 20 C 1.53120 * 109.16088 * 57.65667 * 16 15 14 21 21 C 1.46843 * 110.99580 * 187.72114 * 13 3 2 22 22 H 1.09002 * 109.46391 * 294.17452 * 21 13 3 23 23 C 1.52993 * 109.46660 * 54.14408 * 21 13 3 24 24 H 1.09003 * 109.47464 * 60.00212 * 1 2 3 25 25 H 1.09003 * 109.47267 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47114 * 299.99878 * 1 2 3 27 27 H 1.08997 * 109.47211 * 240.00660 * 2 1 3 28 28 H 1.08992 * 109.47183 * 120.00201 * 2 1 3 29 29 H 0.96997 * 119.99911 * 354.93953 * 8 7 5 30 30 H 1.08999 * 109.46156 * 305.85633 * 14 13 3 31 31 H 1.09003 * 109.46032 * 65.82153 * 14 13 3 32 32 H 1.09000 * 109.49777 * 60.76033 * 15 14 13 33 33 H 1.08996 * 109.50507 * 180.84227 * 15 14 13 34 34 H 1.09000 * 109.47447 * 299.99740 * 19 18 16 35 35 H 1.09003 * 109.47064 * 60.00624 * 19 18 16 36 36 H 1.09006 * 109.46285 * 179.97438 * 19 18 16 37 37 H 1.09001 * 109.50290 * 62.28113 * 20 16 15 38 38 H 1.09005 * 109.49968 * 182.36117 * 20 16 15 39 39 H 1.09005 * 109.47123 * 52.93804 * 23 21 13 40 40 H 1.09007 * 109.47215 * 172.93984 * 23 21 13 41 41 H 1.09002 * 109.47045 * 292.93810 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6115 1.9794 -0.8464 5 6 3.5427 1.4440 -0.1128 6 1 4.1452 1.8090 0.7058 7 6 4.1483 0.9796 -1.2610 8 7 5.4269 0.6717 -1.2518 9 14 3.1528 0.7876 -2.8299 10 1 4.0297 0.2746 -3.9130 11 1 2.0421 -0.1704 -2.5973 12 1 2.5948 2.1054 -3.2265 13 7 1.6421 2.1025 1.2507 14 6 2.2694 1.4553 2.4100 15 6 1.7216 2.0724 3.6988 16 6 2.0191 3.5744 3.7063 17 1 3.0975 3.7322 3.6958 18 8 1.4601 4.1660 4.8809 19 6 2.3466 4.1828 6.0014 20 6 1.3958 4.2163 2.4637 21 6 1.9531 3.5371 1.2107 22 1 3.0339 3.6735 1.1738 23 6 1.3179 4.1619 -0.0331 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 5.9606 0.8401 -0.4595 30 1 2.0467 0.3884 2.3948 31 1 3.3488 1.6015 2.3674 32 1 0.6443 1.9145 3.7485 33 1 2.1985 1.6021 4.5588 34 1 2.6271 3.1613 6.2582 35 1 3.2409 4.7526 5.7488 36 1 1.8482 4.6478 6.8520 37 1 0.3133 4.0921 2.4941 38 1 1.6399 5.2785 2.4417 39 1 0.2560 3.9176 -0.0605 40 1 1.4409 5.2445 0.0010 41 1 1.8044 3.7690 -0.9259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379602521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:31 Heat of formation + Delta-G solvation = -73.398924 kcal Electronic energy + Delta-G solvation = -19090.274601 eV Core-core repulsion = 16389.984959 eV Total energy + Delta-G solvation = -2700.289642 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.75771 -38.66788 -35.85700 -34.06659 -33.35273 -31.82154 -28.81302 -27.90339 -27.18591 -24.73638 -24.08926 -22.39334 -21.38186 -20.73373 -19.11403 -17.55088 -17.10816 -16.40307 -16.11884 -15.99664 -15.74984 -15.08661 -14.86324 -14.61872 -14.31417 -13.95866 -13.74124 -13.32048 -13.02616 -12.88932 -12.69055 -12.66773 -12.52317 -12.20289 -12.09021 -12.03479 -11.85877 -11.57660 -11.42488 -11.38228 -11.19171 -10.83783 -10.48571 -10.39958 -9.17297 -8.50131 -6.33577 1.45750 1.51523 1.69548 2.48448 2.74547 3.08942 3.24309 3.81256 3.83963 4.09624 4.18996 4.40707 4.44025 4.47042 4.48424 4.52083 4.55355 4.60235 4.65978 4.74586 4.79629 4.87147 4.93880 4.97197 5.01550 5.03864 5.16926 5.23304 5.27895 5.29589 5.35657 5.46559 5.54499 5.67974 5.99235 6.02883 6.22689 6.24903 6.54360 6.76654 7.44585 8.66008 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029023 B = 0.007605 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.528217 B = 3680.817374 C = 3800.794887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.124 4.124 3 C 0.185 3.815 4 H 0.042 0.958 5 C -0.612 4.612 6 H 0.017 0.983 7 C -0.018 4.018 8 N -0.943 5.943 9 Si 1.074 2.926 10 H -0.295 1.295 11 H -0.238 1.238 12 H -0.263 1.263 13 N -0.512 5.512 14 C 0.069 3.931 15 C -0.124 4.124 16 C 0.093 3.907 17 H 0.043 0.957 18 O -0.398 6.398 19 C 0.024 3.976 20 C -0.096 4.096 21 C 0.089 3.911 22 H 0.007 0.993 23 C -0.136 4.136 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.041 0.959 29 H 0.247 0.753 30 H 0.068 0.932 31 H 0.001 0.999 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.642 5.271 8.498 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.162 4.162 3 C 0.077 3.923 4 H 0.060 0.940 5 C -0.650 4.650 6 H 0.035 0.965 7 C -0.216 4.216 8 N -0.580 5.580 9 Si 0.896 3.104 10 H -0.222 1.222 11 H -0.162 1.162 12 H -0.188 1.188 13 N -0.236 5.236 14 C -0.060 4.060 15 C -0.162 4.162 16 C 0.035 3.965 17 H 0.061 0.939 18 O -0.317 6.317 19 C -0.072 4.072 20 C -0.134 4.134 21 C -0.020 4.020 22 H 0.025 0.975 23 C -0.193 4.193 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.019 0.981 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.261 4.781 7.012 14.101 hybrid contribution 2.292 0.331 1.632 2.833 sum -8.969 5.113 8.644 13.464 Atomic orbital electron populations 1.21636 0.94594 1.00816 1.01993 1.21944 0.96329 0.97678 1.00253 1.19568 0.91539 0.91799 0.89400 0.94025 1.22729 0.94146 1.46149 1.02002 0.96479 1.27050 0.97348 0.92337 1.04907 1.71001 1.09435 1.44732 1.32851 0.83727 0.75356 0.79027 0.72259 1.22200 1.16221 1.18794 1.62401 1.56716 1.01703 1.02746 1.21803 0.94943 0.98703 0.90509 1.22003 1.02542 0.95224 0.96438 1.22104 0.96033 0.92610 0.85728 0.93870 1.87859 1.41760 1.81319 1.20793 1.22962 0.94221 1.01050 0.88952 1.21612 1.01705 0.99054 0.90979 1.21366 0.96120 0.88871 0.95612 0.97536 1.21776 1.01243 1.00252 0.96074 0.93208 0.92850 0.91870 0.93491 0.94009 0.94359 0.91322 0.98077 0.90197 0.91210 0.93790 0.93941 0.87639 0.89994 0.90486 0.90980 0.90944 0.94118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 9.80 71.98 0.71 -3.70 16 2 C -0.12 -5.16 4.95 30.59 0.15 -5.01 16 3 C 0.19 8.32 0.98 44.17 0.04 8.36 16 4 H 0.04 1.88 4.61 -2.39 -0.01 1.87 16 5 C -0.61 -33.64 7.49 25.60 0.19 -33.45 16 6 H 0.02 1.05 6.10 -2.91 -0.02 1.04 16 7 C -0.02 -1.05 5.32 84.65 0.45 -0.60 16 8 N -0.94 -59.34 13.70 21.45 0.29 -59.04 16 9 Si 1.07 49.43 26.29 68.60 1.80 51.23 16 10 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 11 H -0.24 -9.70 5.66 99.48 0.56 -9.14 16 12 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 13 N -0.51 -20.23 3.89 -850.40 -3.31 -23.54 16 14 C 0.07 2.69 4.80 86.33 0.41 3.11 16 15 C -0.12 -3.88 5.71 30.65 0.18 -3.70 16 16 C 0.09 2.85 2.68 30.67 0.08 2.93 16 17 H 0.04 1.40 7.79 -2.39 -0.02 1.38 16 18 O -0.40 -11.15 10.35 -148.98 -1.54 -12.69 16 19 C 0.02 0.51 10.82 113.37 1.23 1.73 16 20 C -0.10 -2.94 5.02 30.65 0.15 -2.78 16 21 C 0.09 3.32 2.14 44.94 0.10 3.42 16 22 H 0.01 0.29 7.26 -2.39 -0.02 0.28 16 23 C -0.14 -4.54 8.53 71.98 0.61 -3.93 16 24 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 2.03 7.74 -2.39 -0.02 2.02 16 27 H 0.05 2.06 4.74 -2.39 -0.01 2.05 16 28 H 0.04 1.78 6.15 -2.39 -0.01 1.77 16 29 H 0.25 15.92 8.73 -92.71 -0.81 15.11 16 30 H 0.07 2.70 6.04 -2.39 -0.01 2.69 16 31 H 0.00 0.04 6.40 -2.39 -0.02 0.03 16 32 H 0.08 2.42 8.14 -2.39 -0.02 2.41 16 33 H 0.07 1.97 7.94 -2.39 -0.02 1.95 16 34 H 0.04 0.88 7.94 -2.39 -0.02 0.86 16 35 H 0.04 0.85 8.09 -2.39 -0.02 0.83 16 36 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.08 2.42 8.14 -2.39 -0.02 2.41 16 38 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.04 1.55 6.59 -2.39 -0.02 1.53 16 Total: -1.00 -63.63 303.58 2.35 -61.28 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.80 Total: 16.39 kcal Atomic # 6 Polarization: -37.93 SS G_CDS: 4.30 Total: -33.62 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -3.02 Total: -82.58 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -1.54 Total: -12.69 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 1.80 Total: 51.23 kcal Total: -63.63 2.35 -61.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379602521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.120 kcal (2) G-P(sol) polarization free energy of solvation -63.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds