Wall clock time and date at job start Sun Mar 29 2020 22:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 N 1.46301 * 114.00238 * 2 1 4 4 C 1.46902 * 110.99893 * 296.63108 * 3 2 1 5 5 C 1.52992 * 109.47239 * 287.13344 * 4 3 2 6 6 C 1.53002 * 109.47038 * 62.09554 * 5 4 3 7 7 C 1.52998 * 109.47608 * 182.09681 * 5 4 3 8 8 C 1.53008 * 109.47115 * 302.10058 * 5 4 3 9 9 C 1.46905 * 110.99897 * 60.57997 * 3 2 1 10 10 C 1.53002 * 109.47087 * 69.78485 * 9 3 2 11 11 C 1.50701 * 115.54591 * 54.26920 * 10 9 3 12 12 H 1.08004 * 119.99600 * 215.52345 * 11 10 9 13 13 C 1.37870 * 120.00194 * 35.25512 * 11 10 9 14 14 N 1.31512 * 120.00237 * 359.71361 * 13 11 10 15 15 Si 1.86810 * 120.00009 * 179.72102 * 13 11 10 16 16 H 1.48494 * 109.47097 * 64.99599 * 15 13 11 17 17 H 1.48500 * 109.46759 * 184.99532 * 15 13 11 18 18 H 1.48501 * 109.46625 * 304.99089 * 15 13 11 19 19 C 1.52990 * 117.50001 * 199.94152 * 10 9 3 20 20 C 1.52996 * 117.49992 * 268.60405 * 10 9 3 21 21 H 1.09000 * 109.46761 * 183.71893 * 1 2 3 22 22 H 1.08996 * 109.47369 * 303.72072 * 1 2 3 23 23 H 1.09002 * 109.46916 * 63.72366 * 1 2 3 24 24 H 1.09006 * 109.47115 * 47.13394 * 4 3 2 25 25 H 1.08999 * 109.47178 * 167.13406 * 4 3 2 26 26 H 1.08991 * 109.47157 * 50.54738 * 6 5 4 27 27 H 1.09011 * 109.46914 * 170.54556 * 6 5 4 28 28 H 1.09003 * 109.47153 * 290.54423 * 6 5 4 29 29 H 1.09004 * 109.46905 * 59.99874 * 7 5 4 30 30 H 1.08998 * 109.47202 * 179.97438 * 7 5 4 31 31 H 1.09000 * 109.47288 * 300.00084 * 7 5 4 32 32 H 1.08997 * 109.47254 * 55.55070 * 8 5 4 33 33 H 1.09000 * 109.47059 * 175.55046 * 8 5 4 34 34 H 1.09006 * 109.46754 * 295.55170 * 8 5 4 35 35 H 1.09000 * 109.47212 * 309.78129 * 9 3 2 36 36 H 1.09002 * 109.47285 * 189.78160 * 9 3 2 37 37 H 0.96998 * 120.00147 * 174.99260 * 14 13 11 38 38 H 1.09000 * 117.50134 * 215.00273 * 19 10 9 39 39 H 1.09002 * 117.50174 * 0.02562 * 19 10 9 40 40 H 1.09008 * 117.49655 * 359.97243 * 20 10 9 41 41 H 1.08995 * 117.50102 * 144.97037 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3365 0.0000 4 6 1.6767 2.0675 -1.2260 5 6 2.4579 1.4854 -2.4056 6 6 2.0615 0.0214 -2.6071 7 6 2.1358 2.2801 -3.6727 8 6 3.9579 1.5724 -2.1165 9 6 1.6228 2.0915 1.1946 10 6 2.2912 1.4845 2.4299 11 6 3.7912 1.3566 2.3604 12 1 4.2827 0.5107 2.8179 13 6 4.5354 2.3164 1.7079 14 7 3.9360 3.3407 1.1413 15 14 6.3954 2.1618 1.6285 16 1 6.7588 0.9602 0.8353 17 1 6.9655 3.3718 0.9834 18 1 6.9403 2.0308 3.0037 19 6 1.6711 1.7959 3.7934 20 6 1.5239 0.3984 3.1864 21 1 -0.3633 -1.0255 0.0667 22 1 -0.3634 0.5705 0.8547 23 1 -0.3633 0.4550 -0.9215 24 1 0.6075 1.9716 -1.4155 25 1 1.9313 3.1204 -1.1057 26 1 0.9753 -0.0589 -2.6456 27 1 2.4863 -0.3446 -3.5420 28 1 2.4409 -0.5753 -1.7775 29 1 2.4182 3.3230 -3.5291 30 1 2.6928 1.8656 -4.5129 31 1 1.0672 2.2181 -3.8786 32 1 4.1756 1.0732 -1.1723 33 1 4.5116 1.0869 -2.9202 34 1 4.2552 2.6191 -2.0511 35 1 0.5397 2.0443 1.3074 36 1 1.9321 3.1313 1.0882 37 1 4.4626 4.0528 0.7457 38 1 2.3480 1.9082 4.6403 39 1 0.7867 2.4328 3.8105 40 1 0.5426 0.1165 2.8043 41 1 2.1039 -0.4089 3.6336 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379872297.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:36 Heat of formation + Delta-G solvation = 26.263357 kcal Electronic energy + Delta-G solvation = -19507.588090 eV Core-core repulsion = 16811.620129 eV Total energy + Delta-G solvation = -2695.967961 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.23923 -36.40131 -35.08444 -32.07064 -31.33083 -26.82556 -26.49852 -26.25627 -26.04697 -25.19404 -21.93336 -21.01587 -18.83007 -18.24547 -16.54813 -15.65931 -14.76421 -14.69243 -14.47871 -13.91090 -13.66820 -13.53134 -13.32944 -12.86997 -12.55390 -12.03113 -11.79947 -11.52678 -11.26494 -11.12272 -10.98321 -10.83736 -10.75564 -10.47363 -10.37749 -10.22201 -10.14053 -9.99715 -9.93240 -9.35640 -9.03304 -8.74669 -8.59263 -8.01748 -7.65665 -5.84241 -3.88058 3.40135 3.43534 3.48700 3.86071 4.51478 4.99617 5.26285 5.36795 5.42402 5.62061 5.70510 5.79637 5.83047 5.96623 6.00632 6.04440 6.13389 6.17805 6.23788 6.29491 6.36879 6.38601 6.45688 6.64934 6.66386 6.73102 6.78004 6.79369 6.81827 6.97061 7.10673 7.13788 7.36941 7.38688 7.59140 7.96174 8.07870 8.25683 8.60918 9.05537 9.71761 11.15845 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018334 B = 0.012485 C = 0.008603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.879093 B = 2242.125650 C = 3253.722545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 O -0.230 6.230 3 N -0.262 5.262 4 C 0.029 3.971 5 C -0.054 4.054 6 C -0.134 4.134 7 C -0.139 4.139 8 C -0.129 4.129 9 C 0.064 3.936 10 C 0.073 3.927 11 C -0.460 4.460 12 H 0.054 0.946 13 C 0.085 3.915 14 N -0.885 5.885 15 Si 0.888 3.112 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.282 1.282 19 C -0.214 4.214 20 C -0.205 4.205 21 H 0.075 0.925 22 H 0.038 0.962 23 H 0.028 0.972 24 H 0.031 0.969 25 H 0.087 0.913 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.032 0.968 34 H 0.046 0.954 35 H 0.001 0.999 36 H 0.133 0.867 37 H 0.256 0.744 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.216 -1.384 -6.395 8.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 O -0.235 6.235 3 N -0.026 5.026 4 C -0.101 4.101 5 C -0.055 4.055 6 C -0.191 4.191 7 C -0.197 4.197 8 C -0.186 4.186 9 C -0.064 4.064 10 C 0.073 3.927 11 C -0.498 4.498 12 H 0.072 0.928 13 C -0.116 4.116 14 N -0.524 5.524 15 Si 0.717 3.283 16 H -0.201 1.201 17 H -0.215 1.215 18 H -0.207 1.207 19 C -0.252 4.252 20 C -0.242 4.242 21 H 0.093 0.907 22 H 0.057 0.943 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.105 0.895 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.018 0.982 36 H 0.151 0.849 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.530 -1.501 -6.557 8.109 hybrid contribution -0.352 0.362 0.011 0.505 sum -4.882 -1.140 -6.545 8.244 Atomic orbital electron populations 1.22961 0.88125 1.01685 0.98833 1.91563 1.14664 1.21052 1.96207 1.69534 1.38714 0.93715 1.00666 1.22751 0.96518 0.98879 0.91907 1.20363 0.96829 0.95273 0.92989 1.21921 0.99682 0.96220 1.01304 1.21881 1.00382 1.00018 0.97449 1.21719 0.93257 1.01409 1.02207 1.22603 0.92694 1.01297 0.89797 1.18742 0.93701 0.93930 0.86372 1.20315 0.88657 1.07653 1.33137 0.92806 1.24700 0.97728 0.95452 0.93768 1.69683 1.34358 1.09902 1.38431 0.86730 0.86148 0.77466 0.77974 1.20127 1.21512 1.20748 1.23042 1.02267 0.98080 1.01847 1.22822 1.00682 0.92104 1.08582 0.90654 0.94341 0.95312 0.95122 0.89524 0.94356 0.94527 0.89969 0.92950 0.93011 0.93606 0.89733 0.94846 0.93517 0.98161 0.84936 0.93317 0.90439 0.92221 0.92031 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.29 10.03 101.05 1.01 0.73 16 2 O -0.23 -4.80 8.37 -13.92 -0.12 -4.92 16 3 N -0.26 -5.64 3.71 -113.77 -0.42 -6.06 16 4 C 0.03 0.53 4.08 -3.83 -0.02 0.52 16 5 C -0.05 -0.92 0.85 -154.51 -0.13 -1.05 16 6 C -0.13 -2.21 7.32 37.16 0.27 -1.93 16 7 C -0.14 -1.98 8.46 37.16 0.31 -1.66 16 8 C -0.13 -2.42 8.35 37.16 0.31 -2.11 16 9 C 0.06 1.46 3.83 -3.82 -0.01 1.44 16 10 C 0.07 1.80 1.94 -155.67 -0.30 1.49 16 11 C -0.46 -12.39 8.75 -34.44 -0.30 -12.69 16 12 H 0.05 1.49 7.81 -52.48 -0.41 1.08 16 13 C 0.08 2.22 5.28 -17.82 -0.09 2.13 16 14 N -0.88 -22.83 10.29 55.43 0.57 -22.26 16 15 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 C -0.21 -4.85 9.96 -26.70 -0.27 -5.11 16 20 C -0.20 -4.59 9.89 -26.70 -0.26 -4.85 16 21 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 22 H 0.04 0.68 5.51 -51.93 -0.29 0.40 16 23 H 0.03 0.46 6.06 -51.93 -0.31 0.14 16 24 H 0.03 0.54 6.25 -51.93 -0.32 0.22 16 25 H 0.09 1.71 7.74 -51.93 -0.40 1.30 16 26 H 0.04 0.59 7.34 -51.93 -0.38 0.21 16 27 H 0.04 0.54 8.12 -51.92 -0.42 0.12 16 28 H 0.08 1.55 6.38 -51.93 -0.33 1.22 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.89 7.40 -51.93 -0.38 1.51 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.00 0.01 6.07 -51.93 -0.32 -0.30 16 36 H 0.13 3.27 5.54 -51.93 -0.29 2.99 16 37 H 0.26 6.47 8.32 -40.82 -0.34 6.13 16 38 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.29 7.32 -51.92 -0.38 0.91 16 41 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 315.10 15.07 4.75 4.75 Total: -1.00 -26.18 315.10 -6.90 -33.08 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.18 Total: 2.48 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 0.52 Total: -23.10 kcal Atomic # 7 Polarization: -28.46 SS G_CDS: 0.15 Total: -28.32 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.12 Total: -4.92 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.18 -6.90 -33.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379872297.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.343 kcal (2) G-P(sol) polarization free energy of solvation -26.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds