Wall clock time and date at job start Sun Mar 29 2020 22:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00069 * 2 1 4 4 C 1.53001 * 109.47057 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47171 * 60.00095 * 4 3 2 6 6 C 1.52999 * 109.47092 * 300.00264 * 4 3 2 7 7 N 1.46900 * 109.46938 * 180.02562 * 4 3 2 8 8 C 1.46893 * 111.00136 * 303.95362 * 7 4 3 9 9 C 1.46904 * 110.99818 * 180.02562 * 7 4 3 10 10 C 1.52997 * 109.47237 * 189.51844 * 9 7 4 11 11 C 1.50709 * 115.54795 * 54.77104 * 10 9 7 12 12 H 1.07995 * 119.99963 * 215.52035 * 11 10 9 13 13 C 1.37875 * 119.99638 * 35.25118 * 11 10 9 14 14 N 1.31512 * 120.00540 * 15.29807 * 13 11 10 15 15 Si 1.86800 * 119.99533 * 195.29687 * 13 11 10 16 16 H 1.48505 * 109.47210 * 89.99901 * 15 13 11 17 17 H 1.48497 * 109.47200 * 209.99605 * 15 13 11 18 18 H 1.48492 * 109.47494 * 329.99949 * 15 13 11 19 19 C 1.52998 * 117.50154 * 200.44020 * 10 9 7 20 20 C 1.53001 * 117.49940 * 269.10513 * 10 9 7 21 21 H 1.08998 * 109.47451 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47336 * 300.00167 * 1 2 3 23 23 H 1.09003 * 109.46839 * 59.99482 * 1 2 3 24 24 H 1.09001 * 109.46907 * 60.00109 * 3 2 1 25 25 H 1.08996 * 109.47612 * 299.99948 * 3 2 1 26 26 H 1.08998 * 109.47673 * 179.97438 * 5 4 3 27 27 H 1.09002 * 109.47499 * 300.00040 * 5 4 3 28 28 H 1.09004 * 109.46812 * 60.00009 * 5 4 3 29 29 H 1.09001 * 109.47231 * 299.99973 * 6 4 3 30 30 H 1.09002 * 109.47053 * 60.00281 * 6 4 3 31 31 H 1.09000 * 109.47259 * 180.02562 * 6 4 3 32 32 H 1.09007 * 109.46817 * 298.06082 * 8 7 4 33 33 H 1.09000 * 109.47164 * 58.05976 * 8 7 4 34 34 H 1.09002 * 109.47636 * 178.05981 * 8 7 4 35 35 H 1.09000 * 109.47103 * 69.52027 * 9 7 4 36 36 H 1.09000 * 109.47001 * 309.51894 * 9 7 4 37 37 H 0.96999 * 119.99913 * 183.97023 * 14 13 11 38 38 H 1.08998 * 117.50027 * 215.00482 * 19 10 9 39 39 H 1.08997 * 117.49807 * 0.02562 * 19 10 9 40 40 H 1.08995 * 117.49882 * 359.97415 * 20 10 9 41 41 H 1.09003 * 117.49887 * 144.97268 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9874 0.4252 -1.2482 6 6 3.9864 0.4255 1.2502 7 7 4.1329 2.5266 0.0013 8 6 3.6479 3.3194 -1.1363 9 6 5.6000 2.4497 0.0013 10 6 6.1838 3.8435 0.2405 11 6 5.6971 4.5480 1.4807 12 1 5.5547 5.6185 1.4730 13 6 5.4285 3.8250 2.6236 14 7 5.8706 2.5919 2.7408 15 14 4.4367 4.5970 4.0055 16 1 2.9929 4.3230 3.7914 17 1 4.8631 4.0173 5.3045 18 1 4.6654 6.0641 4.0192 19 6 7.6328 4.0854 -0.1867 20 6 6.4847 4.7038 -0.9885 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.6886 1.8463 0.8900 25 1 1.6887 1.8464 -0.8899 26 1 5.0740 0.3394 -1.2481 27 1 3.5441 -0.5706 -1.2483 28 1 3.6661 0.9660 -2.1384 29 1 3.6644 0.9666 2.1400 30 1 3.5430 -0.5703 1.2501 31 1 5.0730 0.3398 1.2509 32 1 3.9434 2.8367 -2.0679 33 1 2.5610 3.3902 -1.0926 34 1 4.0791 4.3195 -1.0925 35 1 5.9440 2.0721 -0.9616 36 1 5.9285 1.7773 0.7938 37 1 5.6334 2.0636 3.5189 38 1 8.2342 4.7540 0.4292 39 1 8.1702 3.2517 -0.6386 40 1 6.2672 4.2766 -1.9673 41 1 6.3304 5.7793 -0.9000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380069263.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:11 Heat of formation + Delta-G solvation = -6.074815 kcal Electronic energy + Delta-G solvation = -19242.100441 eV Core-core repulsion = 16544.730192 eV Total energy + Delta-G solvation = -2697.370249 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.96747 -37.17245 -35.54123 -31.97116 -31.05072 -27.84741 -26.87084 -26.21866 -25.34650 -24.54265 -23.04667 -21.08278 -18.96683 -18.03454 -16.39848 -16.06146 -15.53274 -14.95246 -14.58030 -14.22553 -13.91508 -13.60292 -13.16008 -13.05413 -12.75064 -12.37750 -11.71604 -11.53062 -11.36416 -11.24549 -11.20212 -10.92789 -10.77478 -10.58158 -10.44681 -10.41772 -10.33901 -10.01867 -9.71688 -9.33668 -9.14587 -8.95843 -8.48826 -7.84640 -7.12398 -5.88935 -3.84134 3.40906 3.47051 3.50282 3.93149 4.55872 4.93314 5.20897 5.28663 5.37092 5.45866 5.53231 5.69965 5.70547 5.74744 5.84154 6.00203 6.12523 6.16817 6.19290 6.29901 6.40205 6.45764 6.57136 6.60933 6.66527 6.74303 6.76133 6.78749 6.95980 7.02263 7.19565 7.25636 7.38916 7.42466 7.69059 8.08009 8.23376 8.27473 8.62501 9.07871 9.74564 11.16775 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020323 B = 0.010022 C = 0.007910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.411145 B = 2793.275038 C = 3538.761587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.388 6.388 3 C 0.074 3.926 4 C 0.113 3.887 5 C -0.174 4.174 6 C -0.122 4.122 7 N -0.492 5.492 8 C 0.021 3.979 9 C 0.099 3.901 10 C 0.069 3.931 11 C -0.476 4.476 12 H 0.052 0.948 13 C 0.094 3.906 14 N -0.867 5.867 15 Si 0.880 3.120 16 H -0.280 1.280 17 H -0.292 1.292 18 H -0.279 1.279 19 C -0.207 4.207 20 C -0.219 4.219 21 H 0.080 0.920 22 H 0.038 0.962 23 H 0.035 0.965 24 H 0.056 0.944 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.009 0.991 33 H 0.048 0.952 34 H 0.078 0.922 35 H -0.010 1.010 36 H 0.121 0.879 37 H 0.257 0.743 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.048 -4.473 -5.671 10.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.003 4.003 4 C 0.023 3.977 5 C -0.233 4.233 6 C -0.179 4.179 7 N -0.216 5.216 8 C -0.127 4.127 9 C -0.028 4.028 10 C 0.068 3.932 11 C -0.513 4.513 12 H 0.070 0.930 13 C -0.109 4.109 14 N -0.504 5.504 15 Si 0.709 3.291 16 H -0.206 1.206 17 H -0.218 1.218 18 H -0.204 1.204 19 C -0.245 4.245 20 C -0.257 4.257 21 H 0.099 0.901 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.027 0.973 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.008 0.992 36 H 0.139 0.861 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.046 -4.550 -5.066 9.798 hybrid contribution -0.568 0.366 -0.192 0.703 sum -7.614 -4.183 -5.259 10.155 Atomic orbital electron populations 1.22661 0.81930 1.02049 0.99668 1.87829 1.18784 1.28672 1.95377 1.22624 0.93989 0.83480 1.00208 1.20888 0.91266 0.90170 0.95375 1.22409 1.01448 1.00882 0.98556 1.21705 1.01849 0.97772 0.96565 1.61934 1.08662 1.10200 1.40788 1.22492 0.99165 0.99829 0.91259 1.21823 0.84292 0.98886 0.97771 1.18938 0.91053 0.91742 0.91467 1.20235 1.44283 0.92919 0.93845 0.92954 1.24635 0.94271 0.94891 0.97140 1.69894 1.41937 1.09574 1.29015 0.86811 0.81357 0.79350 0.81612 1.20629 1.21805 1.20434 1.22971 0.94257 1.02301 1.04991 1.22957 1.07633 0.98847 0.96221 0.90127 0.94321 0.94614 0.92605 0.93703 0.92537 0.92255 0.93444 0.92025 0.93605 0.91495 0.97286 0.93298 0.90298 0.99216 0.86100 0.93284 0.90518 0.92120 0.91963 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.39 -6.19 9.35 -35.23 -0.33 -6.52 16 3 C 0.07 1.25 4.45 37.16 0.17 1.42 16 4 C 0.11 2.12 0.54 -131.60 -0.07 2.05 16 5 C -0.17 -2.98 7.64 37.15 0.28 -2.70 16 6 C -0.12 -2.38 8.04 37.16 0.30 -2.08 16 7 N -0.49 -10.37 4.20 -227.17 -0.95 -11.32 16 8 C 0.02 0.40 8.42 60.06 0.51 0.90 16 9 C 0.10 2.25 3.23 -3.82 -0.01 2.24 16 10 C 0.07 1.67 1.36 -155.66 -0.21 1.46 16 11 C -0.48 -12.74 8.72 -34.44 -0.30 -13.04 16 12 H 0.05 1.44 7.86 -52.49 -0.41 1.03 16 13 C 0.09 2.49 5.11 -17.82 -0.09 2.40 16 14 N -0.87 -22.98 10.89 55.43 0.60 -22.37 16 15 Si 0.88 21.13 29.57 -169.99 -5.03 16.10 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 C -0.21 -4.73 9.96 -26.69 -0.27 -5.00 16 20 C -0.22 -4.77 8.22 -26.69 -0.22 -4.99 16 21 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.04 0.72 6.30 -51.93 -0.33 0.39 16 26 H 0.06 1.00 6.62 -51.93 -0.34 0.66 16 27 H 0.06 0.96 7.68 -51.93 -0.40 0.57 16 28 H 0.05 0.78 6.54 -51.93 -0.34 0.44 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.04 0.82 7.68 -51.93 -0.40 0.42 16 31 H 0.07 1.39 6.21 -51.93 -0.32 1.07 16 32 H 0.01 0.16 6.50 -51.92 -0.34 -0.18 16 33 H 0.05 0.84 6.12 -51.93 -0.32 0.52 16 34 H 0.08 1.60 6.01 -51.93 -0.31 1.28 16 35 H -0.01 -0.22 6.78 -51.93 -0.35 -0.58 16 36 H 0.12 3.00 3.77 -51.93 -0.20 2.80 16 37 H 0.26 6.62 8.32 -40.82 -0.34 6.28 16 38 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 LS Contribution 311.71 15.07 4.70 4.70 Total: -1.00 -26.94 311.71 -6.81 -33.76 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.00 Total: 1.46 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 1.19 Total: -15.82 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: -0.35 Total: -33.69 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.33 Total: -6.52 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.94 -6.81 -33.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380069263.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.683 kcal (2) G-P(sol) polarization free energy of solvation -26.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds