Wall clock time and date at job start Sun Mar 29 2020 23:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46905 * 2 1 4 4 H 1.08998 * 109.47205 * 303.88283 * 3 2 1 5 5 C 1.50708 * 109.46749 * 183.88819 * 3 2 1 6 6 H 1.07998 * 119.99646 * 274.56853 * 5 3 2 7 7 C 1.37872 * 119.99909 * 94.57696 * 5 3 2 8 8 N 1.31519 * 120.00318 * 353.27010 * 7 5 3 9 9 Si 1.86796 * 119.99968 * 173.26782 * 7 5 3 10 10 H 1.48503 * 109.46926 * 59.99922 * 9 7 5 11 11 H 1.48501 * 109.47507 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47510 * 300.00140 * 9 7 5 13 13 N 1.46892 * 109.47258 * 63.88599 * 3 2 1 14 14 C 1.40465 * 110.99997 * 66.05014 * 13 3 2 15 15 C 1.54397 * 111.45209 * 187.82923 * 14 13 3 16 16 C 1.50728 * 109.12854 * 284.55926 * 15 14 13 17 17 O 1.44234 * 112.84563 * 91.52852 * 16 15 14 18 18 C 1.43938 * 116.11513 * 318.68612 * 17 16 15 19 19 C 1.52998 * 108.99959 * 79.86307 * 18 17 16 20 20 C 1.52992 * 109.00074 * 198.62900 * 18 17 16 21 21 C 1.47596 * 111.00190 * 194.49318 * 13 3 2 22 22 H 1.08998 * 109.47579 * 59.99948 * 1 2 3 23 23 H 1.09002 * 109.47165 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47014 * 299.99592 * 1 2 3 25 25 H 1.08996 * 109.47117 * 239.99916 * 2 1 3 26 26 H 1.08995 * 109.47077 * 120.00089 * 2 1 3 27 27 H 0.97003 * 119.99716 * 4.60222 * 8 7 5 28 28 H 1.09007 * 109.07925 * 308.32822 * 14 13 3 29 29 H 1.08997 * 109.09032 * 67.31486 * 14 13 3 30 30 H 1.08996 * 109.52842 * 44.45746 * 15 14 13 31 31 H 1.09000 * 109.52794 * 164.67054 * 15 14 13 32 32 H 1.08994 * 108.80457 * 212.39356 * 16 15 14 33 33 H 1.08996 * 108.80893 * 330.77339 * 16 15 14 34 34 H 1.09008 * 109.46892 * 35.12508 * 19 18 17 35 35 H 1.08992 * 109.47348 * 155.12465 * 19 18 17 36 36 H 1.09005 * 109.47516 * 275.12972 * 19 18 17 37 37 H 1.08999 * 109.47595 * 59.99931 * 20 18 17 38 38 H 1.08997 * 109.47344 * 180.02562 * 20 18 17 39 39 H 1.08999 * 109.46719 * 300.00135 * 20 18 17 40 40 H 1.09005 * 109.64139 * 272.67953 * 21 13 3 41 41 H 1.09006 * 109.64002 * 33.29851 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6209 1.9760 -0.8531 5 6 3.5439 1.4436 -0.0964 6 1 4.1423 1.3484 0.7976 7 6 4.1558 1.5662 -1.3257 8 7 3.4334 1.5491 -2.4246 9 14 6.0111 1.7567 -1.4307 10 1 6.6657 0.5715 -0.8208 11 1 6.4176 1.8679 -2.8547 12 1 6.4252 2.9815 -0.7002 13 7 1.6284 2.1074 1.2435 14 6 2.2611 1.5294 2.3565 15 6 1.6938 2.0856 3.6804 16 6 2.2327 3.4755 3.9034 17 8 1.3776 4.5016 3.3590 18 6 0.8027 4.2282 2.0681 19 6 -0.4037 3.3040 2.2457 20 6 0.3324 5.5433 1.4437 21 6 1.7921 3.5706 1.1402 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8899 27 1 2.4655 1.5175 -2.3682 28 1 2.1117 0.4499 2.3305 29 1 3.3292 1.7414 2.3094 30 1 0.6059 2.1212 3.6242 31 1 1.9962 1.4409 4.5057 32 1 2.3429 3.6419 4.9749 33 1 3.2133 3.5517 3.4337 34 1 -0.9158 3.5499 3.1761 35 1 -1.0886 3.4356 1.4082 36 1 -0.0660 2.2682 2.2797 37 1 1.1819 6.2171 1.3323 38 1 -0.1051 5.3450 0.4652 39 1 -0.4152 6.0048 2.0888 40 1 2.8058 3.8473 1.4300 41 1 1.6009 3.8892 0.1155 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380158135.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:45 Heat of formation + Delta-G solvation = -33.596400 kcal Electronic energy + Delta-G solvation = -19602.750407 eV Core-core repulsion = 16904.186732 eV Total energy + Delta-G solvation = -2698.563675 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.94430 -36.63802 -33.50388 -33.23188 -31.67310 -30.08111 -26.91865 -26.59955 -25.92154 -23.80606 -22.68981 -20.99377 -19.32103 -18.91831 -16.86877 -16.20251 -15.72556 -15.09788 -14.56505 -13.88841 -13.75821 -13.47116 -12.94875 -12.81726 -12.73958 -12.55434 -12.14496 -12.02662 -11.72110 -11.50457 -11.03147 -10.95554 -10.77684 -10.75498 -10.67221 -10.38741 -10.18071 -10.02901 -9.78006 -9.71276 -9.56413 -9.08948 -8.89597 -8.40980 -6.95691 -6.41081 -4.16533 3.37712 3.38842 3.57302 4.09685 4.46052 4.83132 5.22726 5.28149 5.32640 5.44240 5.55473 5.63032 5.73615 5.89828 6.01043 6.06309 6.09993 6.13094 6.15977 6.20124 6.29818 6.30143 6.32536 6.33757 6.50886 6.62172 6.71048 6.77869 6.81462 6.86651 6.99385 7.12903 7.27336 7.36025 7.70135 7.94050 8.09831 8.43962 8.50321 8.77949 9.57550 10.94503 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022388 B = 0.009305 C = 0.008386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.349545 B = 3008.500327 C = 3338.001894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C 0.198 3.802 4 H 0.045 0.955 5 C -0.624 4.624 6 H 0.052 0.948 7 C 0.028 3.972 8 N -0.907 5.907 9 Si 1.061 2.939 10 H -0.289 1.289 11 H -0.282 1.282 12 H -0.289 1.289 13 N -0.540 5.540 14 C 0.072 3.928 15 C -0.177 4.177 16 C 0.067 3.933 17 O -0.393 6.393 18 C 0.114 3.886 19 C -0.175 4.175 20 C -0.137 4.137 21 C 0.055 3.945 22 H 0.041 0.959 23 H 0.029 0.971 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.270 0.730 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.050 0.950 36 H 0.107 0.893 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.043 0.957 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.145 2.504 8.750 10.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 C 0.092 3.908 4 H 0.063 0.937 5 C -0.663 4.663 6 H 0.070 0.930 7 C -0.178 4.178 8 N -0.543 5.543 9 Si 0.889 3.111 10 H -0.215 1.215 11 H -0.208 1.208 12 H -0.216 1.216 13 N -0.263 5.263 14 C -0.058 4.058 15 C -0.214 4.214 16 C -0.009 4.009 17 O -0.314 6.314 18 C 0.075 3.925 19 C -0.232 4.232 20 C -0.195 4.195 21 C -0.073 4.073 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.125 0.875 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.380 2.698 7.822 9.362 hybrid contribution -0.183 -0.267 0.876 0.934 sum -4.563 2.431 8.697 10.118 Atomic orbital electron populations 1.21764 0.98031 0.98947 1.01263 1.21692 0.93116 0.99429 1.00263 1.19483 0.93975 0.90372 0.86949 0.93676 1.22462 0.92381 1.55749 0.95742 0.92972 1.25715 1.06645 0.93193 0.92216 1.70827 1.08044 1.46058 1.29369 0.83653 0.74822 0.76505 0.76076 1.21530 1.20758 1.21560 1.59710 1.59272 1.02548 1.04751 1.21023 0.96597 0.98967 0.89230 1.22594 1.03855 0.96390 0.98589 1.22223 0.93259 0.87917 0.97525 1.88194 1.65772 1.43019 1.34380 1.21327 0.93381 0.94786 0.82995 1.22774 0.96741 1.03779 0.99870 1.21845 1.01133 0.96429 1.00056 1.22035 0.97121 0.88929 0.99237 0.94014 0.95191 0.92562 0.92922 0.93711 0.91766 0.91359 0.95071 0.88736 0.91502 0.90682 0.93610 0.94046 0.93079 0.87513 0.92477 0.91333 0.92507 0.93858 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.79 37.16 0.36 -2.25 16 2 C -0.11 -2.29 5.27 -26.73 -0.14 -2.43 16 3 C 0.20 4.59 1.51 -68.87 -0.10 4.48 16 4 H 0.05 1.16 6.03 -51.93 -0.31 0.85 16 5 C -0.62 -16.32 7.53 -34.44 -0.26 -16.58 16 6 H 0.05 1.39 5.94 -52.49 -0.31 1.08 16 7 C 0.03 0.77 5.45 -17.82 -0.10 0.67 16 8 N -0.91 -26.18 13.63 55.43 0.76 -25.43 16 9 Si 1.06 24.68 29.91 -169.99 -5.08 19.59 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.54 -10.72 1.60 -232.98 -0.37 -11.10 16 14 C 0.07 1.35 4.17 -6.43 -0.03 1.32 16 15 C -0.18 -2.75 5.56 -27.14 -0.15 -2.90 16 16 C 0.07 1.07 6.26 36.02 0.23 1.30 16 17 O -0.39 -6.87 10.22 -35.23 -0.36 -7.23 16 18 C 0.11 1.94 1.07 -91.76 -0.10 1.84 16 19 C -0.17 -2.78 7.18 37.16 0.27 -2.51 16 20 C -0.14 -2.04 8.43 37.15 0.31 -1.72 16 21 C 0.05 1.08 4.30 -4.57 -0.02 1.06 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.99 7.18 -51.93 -0.37 0.62 16 25 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.04 0.94 6.21 -51.93 -0.32 0.62 16 27 H 0.27 7.75 6.60 -40.82 -0.27 7.48 16 28 H 0.07 1.31 5.89 -51.93 -0.31 1.00 16 29 H 0.03 0.67 5.69 -51.93 -0.30 0.37 16 30 H 0.09 1.48 4.54 -51.93 -0.24 1.24 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.79 6.60 -51.93 -0.34 0.45 16 34 H 0.04 0.62 8.07 -51.92 -0.42 0.20 16 35 H 0.05 0.78 7.89 -51.93 -0.41 0.37 16 36 H 0.11 1.81 3.39 -51.93 -0.18 1.63 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.96 8.01 -51.93 -0.42 0.55 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 41 H 0.08 1.59 7.08 -51.93 -0.37 1.22 16 LS Contribution 296.15 15.07 4.46 4.46 Total: -1.00 -27.54 296.15 -6.99 -34.53 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.67 Total: 2.89 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 0.27 Total: -17.72 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.38 Total: -36.52 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.36 Total: -7.23 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -5.08 Total: 19.59 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.54 -6.99 -34.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380158135.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.933 kcal (2) G-P(sol) polarization free energy of solvation -27.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds