Wall clock time and date at job start Sun Mar 29 2020 23:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46905 * 2 1 4 4 H 1.08998 * 109.47205 * 303.88283 * 3 2 1 5 5 C 1.50708 * 109.46749 * 183.88819 * 3 2 1 6 6 H 1.07998 * 119.99646 * 274.56853 * 5 3 2 7 7 C 1.37872 * 119.99909 * 94.57696 * 5 3 2 8 8 N 1.31519 * 120.00318 * 353.27010 * 7 5 3 9 9 Si 1.86796 * 119.99968 * 173.26782 * 7 5 3 10 10 H 1.48503 * 109.46926 * 59.99922 * 9 7 5 11 11 H 1.48501 * 109.47507 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47510 * 300.00140 * 9 7 5 13 13 N 1.46892 * 109.47258 * 63.88599 * 3 2 1 14 14 C 1.40465 * 110.99997 * 66.05014 * 13 3 2 15 15 C 1.54397 * 111.45209 * 187.82923 * 14 13 3 16 16 C 1.50728 * 109.12854 * 284.55926 * 15 14 13 17 17 O 1.44234 * 112.84563 * 91.52852 * 16 15 14 18 18 C 1.43938 * 116.11513 * 318.68612 * 17 16 15 19 19 C 1.52998 * 108.99959 * 79.86307 * 18 17 16 20 20 C 1.52992 * 109.00074 * 198.62900 * 18 17 16 21 21 C 1.47596 * 111.00190 * 194.49318 * 13 3 2 22 22 H 1.08998 * 109.47579 * 59.99948 * 1 2 3 23 23 H 1.09002 * 109.47165 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47014 * 299.99592 * 1 2 3 25 25 H 1.08996 * 109.47117 * 239.99916 * 2 1 3 26 26 H 1.08995 * 109.47077 * 120.00089 * 2 1 3 27 27 H 0.97003 * 119.99716 * 4.60222 * 8 7 5 28 28 H 1.09007 * 109.07925 * 308.32822 * 14 13 3 29 29 H 1.08997 * 109.09032 * 67.31486 * 14 13 3 30 30 H 1.08996 * 109.52842 * 44.45746 * 15 14 13 31 31 H 1.09000 * 109.52794 * 164.67054 * 15 14 13 32 32 H 1.08994 * 108.80457 * 212.39356 * 16 15 14 33 33 H 1.08996 * 108.80893 * 330.77339 * 16 15 14 34 34 H 1.09008 * 109.46892 * 35.12508 * 19 18 17 35 35 H 1.08992 * 109.47348 * 155.12465 * 19 18 17 36 36 H 1.09005 * 109.47516 * 275.12972 * 19 18 17 37 37 H 1.08999 * 109.47595 * 59.99931 * 20 18 17 38 38 H 1.08997 * 109.47344 * 180.02562 * 20 18 17 39 39 H 1.08999 * 109.46719 * 300.00135 * 20 18 17 40 40 H 1.09005 * 109.64139 * 272.67953 * 21 13 3 41 41 H 1.09006 * 109.64002 * 33.29851 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6209 1.9760 -0.8531 5 6 3.5439 1.4436 -0.0964 6 1 4.1423 1.3484 0.7976 7 6 4.1558 1.5662 -1.3257 8 7 3.4334 1.5491 -2.4246 9 14 6.0111 1.7567 -1.4307 10 1 6.6657 0.5715 -0.8208 11 1 6.4176 1.8679 -2.8547 12 1 6.4252 2.9815 -0.7002 13 7 1.6284 2.1074 1.2435 14 6 2.2611 1.5294 2.3565 15 6 1.6938 2.0856 3.6804 16 6 2.2327 3.4755 3.9034 17 8 1.3776 4.5016 3.3590 18 6 0.8027 4.2282 2.0681 19 6 -0.4037 3.3040 2.2457 20 6 0.3324 5.5433 1.4437 21 6 1.7921 3.5706 1.1402 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8899 27 1 2.4655 1.5175 -2.3682 28 1 2.1117 0.4499 2.3305 29 1 3.3292 1.7414 2.3094 30 1 0.6059 2.1212 3.6242 31 1 1.9962 1.4409 4.5057 32 1 2.3429 3.6419 4.9749 33 1 3.2133 3.5517 3.4337 34 1 -0.9158 3.5499 3.1761 35 1 -1.0886 3.4356 1.4082 36 1 -0.0660 2.2682 2.2797 37 1 1.1819 6.2171 1.3323 38 1 -0.1051 5.3450 0.4652 39 1 -0.4152 6.0048 2.0888 40 1 2.8058 3.8473 1.4300 41 1 1.6009 3.8892 0.1155 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380158135.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:45 Heat of formation + Delta-G solvation = -48.818913 kcal Electronic energy + Delta-G solvation = -19603.410504 eV Core-core repulsion = 16904.186732 eV Total energy + Delta-G solvation = -2699.223773 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.43895 -38.26192 -35.06081 -34.81703 -33.48875 -31.53787 -28.32152 -28.11792 -27.59316 -25.58956 -24.30231 -22.49714 -21.07296 -20.34574 -18.76360 -17.65582 -17.26936 -16.68233 -16.03448 -15.75184 -15.36758 -15.07675 -14.54711 -14.38154 -14.27635 -13.92978 -13.60183 -13.45950 -13.09551 -12.87358 -12.75154 -12.53191 -12.48869 -12.28197 -12.20229 -12.03909 -11.93493 -11.60014 -11.45296 -11.25971 -11.04187 -10.85514 -10.51494 -10.39605 -8.79102 -8.50578 -6.33245 1.46410 1.51807 1.71084 2.51189 2.79414 3.11227 3.29239 3.90770 3.94535 4.05197 4.16400 4.24463 4.34397 4.44540 4.54402 4.57543 4.68049 4.69621 4.73530 4.83870 4.87781 4.90425 4.93862 5.05159 5.07070 5.10234 5.17433 5.22073 5.31288 5.36944 5.45265 5.46656 5.63595 5.73198 5.99072 6.05884 6.34081 6.52502 6.61081 6.80686 7.47286 8.76984 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022388 B = 0.009305 C = 0.008386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.349545 B = 3008.500327 C = 3338.001894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 C 0.200 3.800 4 H 0.016 0.984 5 C -0.625 4.625 6 H 0.043 0.957 7 C -0.021 4.021 8 N -0.934 5.934 9 Si 1.101 2.899 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.524 5.524 14 C 0.071 3.929 15 C -0.164 4.164 16 C 0.063 3.937 17 O -0.400 6.400 18 C 0.115 3.885 19 C -0.167 4.167 20 C -0.135 4.135 21 C 0.060 3.940 22 H 0.035 0.965 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.023 0.977 26 H 0.049 0.951 27 H 0.260 0.740 28 H 0.067 0.933 29 H 0.002 0.998 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.024 0.976 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.017 0.983 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.077 2.539 10.719 12.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.138 4.138 3 C 0.093 3.907 4 H 0.034 0.966 5 C -0.664 4.664 6 H 0.062 0.938 7 C -0.221 4.221 8 N -0.572 5.572 9 Si 0.925 3.075 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.205 1.205 13 N -0.246 5.246 14 C -0.058 4.058 15 C -0.201 4.201 16 C -0.013 4.013 17 O -0.321 6.321 18 C 0.076 3.924 19 C -0.225 4.225 20 C -0.193 4.193 21 C -0.068 4.068 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.042 0.958 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.020 0.980 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.124 0.876 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.035 0.965 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.323 2.733 9.818 11.497 hybrid contribution 0.123 -0.274 0.312 0.433 sum -5.200 2.459 10.129 11.649 Atomic orbital electron populations 1.21635 0.95093 1.00574 1.01498 1.21520 0.95676 0.97600 0.98994 1.19334 0.92252 0.91456 0.87616 0.96578 1.22762 0.94193 1.54309 0.95128 0.93835 1.26891 1.09974 0.92947 0.92273 1.70928 1.07573 1.48569 1.30096 0.83116 0.71017 0.77347 0.76045 1.19965 1.21016 1.20499 1.59764 1.58592 1.02494 1.03740 1.21077 0.95045 0.99073 0.90648 1.22514 1.04026 0.96458 0.97092 1.22353 0.92009 0.87879 0.99017 1.88193 1.65936 1.43831 1.34136 1.21336 0.92785 0.95864 0.82407 1.22680 0.96177 1.02631 1.00966 1.21849 1.01485 0.95338 1.00617 1.22025 0.96770 0.88956 0.99083 0.94570 0.92864 0.91456 0.95787 0.93276 0.92899 0.91494 0.97994 0.87940 0.88589 0.87560 0.95731 0.92427 0.92517 0.88488 0.92883 0.90796 0.90621 0.96512 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 9.79 71.98 0.70 -3.90 16 2 C -0.10 -4.29 5.27 30.59 0.16 -4.13 16 3 C 0.20 9.50 1.51 44.17 0.07 9.57 16 4 H 0.02 0.87 6.03 -2.39 -0.01 0.85 16 5 C -0.62 -33.54 7.53 25.60 0.19 -33.35 16 6 H 0.04 2.38 5.94 -2.91 -0.02 2.36 16 7 C -0.02 -1.16 5.45 84.65 0.46 -0.70 16 8 N -0.93 -55.62 13.63 21.45 0.29 -55.33 16 9 Si 1.10 50.45 29.91 68.60 2.05 52.50 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 13 N -0.52 -20.79 1.60 -891.02 -1.43 -22.22 16 14 C 0.07 2.64 4.17 87.94 0.37 3.01 16 15 C -0.16 -4.66 5.56 30.33 0.17 -4.50 16 16 C 0.06 1.89 6.26 71.24 0.45 2.33 16 17 O -0.40 -13.14 10.22 -148.98 -1.52 -14.67 16 18 C 0.12 3.74 1.07 -11.53 -0.01 3.73 16 19 C -0.17 -4.88 7.18 71.98 0.52 -4.37 16 20 C -0.14 -3.81 8.43 71.98 0.61 -3.20 16 21 C 0.06 2.39 4.30 85.44 0.37 2.75 16 22 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.07 2.22 7.18 -2.39 -0.02 2.20 16 25 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 2.05 6.21 -2.39 -0.01 2.03 16 27 H 0.26 15.57 6.60 -92.71 -0.61 14.95 16 28 H 0.07 2.49 5.89 -2.38 -0.01 2.48 16 29 H 0.00 0.09 5.69 -2.39 -0.01 0.08 16 30 H 0.10 2.85 4.54 -2.39 -0.01 2.83 16 31 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.02 0.83 6.60 -2.39 -0.02 0.82 16 34 H 0.06 1.51 8.07 -2.38 -0.02 1.49 16 35 H 0.06 1.59 7.89 -2.39 -0.02 1.57 16 36 H 0.10 3.03 3.39 -2.38 -0.01 3.02 16 37 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 1.98 8.01 -2.39 -0.02 1.96 16 39 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.02 0.74 6.85 -2.38 -0.02 0.73 16 41 H 0.06 2.48 7.08 -2.38 -0.02 2.46 16 Total: -1.00 -60.21 296.15 4.60 -55.61 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 1.16 Total: 16.85 kcal Atomic # 6 Polarization: -36.80 SS G_CDS: 4.05 Total: -32.76 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -1.13 Total: -77.54 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -1.52 Total: -14.67 kcal Atomic # 14 Polarization: 50.45 SS G_CDS: 2.05 Total: 52.50 kcal Total: -60.21 4.60 -55.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380158135.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.796 kcal (2) G-P(sol) polarization free energy of solvation -60.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds