Wall clock time and date at job start Sun Mar 29 2020 23:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47078 * 2 1 4 4 H 1.08998 * 109.47151 * 305.11890 * 3 2 1 5 5 C 1.50702 * 109.47017 * 185.12451 * 3 2 1 6 6 H 1.08004 * 119.99778 * 275.05494 * 5 3 2 7 7 C 1.37873 * 120.00258 * 95.05671 * 5 3 2 8 8 N 1.31521 * 120.00255 * 184.81299 * 7 5 3 9 9 Si 1.86799 * 120.00236 * 4.81479 * 7 5 3 10 10 H 1.48506 * 109.47248 * 84.85834 * 9 7 5 11 11 H 1.48497 * 109.47448 * 204.86106 * 9 7 5 12 12 H 1.48503 * 109.46957 * 324.86408 * 9 7 5 13 13 N 1.46894 * 109.47608 * 65.12144 * 3 2 1 14 14 C 1.44274 * 111.00349 * 66.04699 * 13 3 2 15 15 C 1.54062 * 111.91906 * 219.34928 * 14 13 3 16 16 C 1.54223 * 112.32391 * 318.78288 * 15 14 13 17 17 C 1.50466 * 113.07471 * 318.43404 * 16 15 14 18 18 H 1.09002 * 109.56800 * 332.27816 * 17 16 15 19 19 C 1.53001 * 109.67912 * 211.95974 * 17 16 15 20 20 O 1.42898 * 109.46957 * 65.56979 * 19 17 16 21 21 C 1.54506 * 108.84862 * 92.08293 * 17 16 15 22 22 C 1.45856 * 111.59767 * 282.81714 * 21 17 16 23 23 H 1.08996 * 109.47840 * 300.00731 * 1 2 3 24 24 H 1.09003 * 109.46848 * 60.00547 * 1 2 3 25 25 H 1.09004 * 109.47423 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47840 * 239.99269 * 2 1 3 27 27 H 1.09003 * 109.46848 * 119.99453 * 2 1 3 28 28 H 0.96993 * 120.00304 * 179.97438 * 8 7 5 29 29 H 1.09007 * 108.97346 * 339.95009 * 14 13 3 30 30 H 1.08995 * 108.97930 * 98.73904 * 14 13 3 31 31 H 1.09007 * 108.91558 * 79.58779 * 15 14 13 32 32 H 1.08998 * 108.92093 * 198.13856 * 15 14 13 33 33 H 1.09005 * 108.80591 * 197.47085 * 16 15 14 34 34 H 1.09005 * 108.61117 * 79.25982 * 16 15 14 35 35 H 1.09000 * 109.46726 * 185.57009 * 19 17 16 36 36 H 1.08994 * 109.47006 * 305.56870 * 19 17 16 37 37 H 0.96698 * 113.99871 * 179.97438 * 20 19 17 38 38 H 1.09004 * 109.05096 * 162.26769 * 21 17 16 39 39 H 1.08999 * 108.99573 * 43.32586 * 21 17 16 40 40 H 1.09005 * 108.78960 * 300.43465 * 22 21 17 41 41 H 1.09003 * 108.79514 * 182.21896 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6037 1.9821 -0.8406 5 6 3.5416 1.4444 -0.1269 6 1 4.1580 1.3349 0.7532 7 6 4.1285 1.5858 -1.3664 8 7 5.4346 1.4928 -1.4901 9 14 3.0688 1.9097 -2.8702 10 1 2.8032 3.3663 -2.9843 11 1 3.7787 1.4393 -4.0868 12 1 1.7819 1.1810 -2.7351 13 7 1.6539 2.0984 1.2564 14 6 2.3266 1.4967 2.3819 15 6 1.4013 1.3763 3.6078 16 6 0.5253 2.6300 3.8059 17 6 1.2734 3.9148 3.5742 18 1 2.3308 3.7661 3.7931 19 6 0.7107 5.0097 4.4827 20 8 0.9721 4.6771 5.8476 21 6 1.1045 4.3311 2.0959 22 6 1.9600 3.5438 1.2152 23 1 -0.3634 0.5139 0.8898 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8898 27 1 1.8932 -0.5138 0.8901 28 1 5.8475 1.5919 -2.3621 29 1 2.6709 0.5020 2.0986 30 1 3.1892 2.1077 2.6474 31 1 0.7542 0.5088 3.4782 32 1 2.0121 1.2294 4.4985 33 1 0.1362 2.6295 4.8241 34 1 -0.3129 2.5821 3.1107 35 1 1.1863 5.9607 4.2429 36 1 -0.3651 5.0925 4.3285 37 1 0.6427 5.3289 6.4813 38 1 1.3607 5.3855 1.9917 39 1 0.0644 4.1873 1.8034 40 1 2.9988 3.6913 1.5110 41 1 1.8345 3.9003 0.1928 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382002963.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:44 Heat of formation + Delta-G solvation = -62.730964 kcal Electronic energy + Delta-G solvation = -18953.768543 eV Core-core repulsion = 16253.941499 eV Total energy + Delta-G solvation = -2699.827044 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.09379 -36.99236 -34.89512 -32.21258 -31.97088 -31.50538 -27.94056 -26.33488 -24.87836 -22.87584 -22.42033 -20.45297 -19.55224 -18.44639 -17.22439 -16.77186 -15.53832 -15.23598 -14.45757 -14.20640 -14.11690 -13.88846 -13.21274 -12.78106 -12.74564 -12.47338 -12.15679 -11.95849 -11.69480 -11.55164 -11.19584 -10.90162 -10.86638 -10.47177 -10.21161 -10.15515 -10.04190 -9.91175 -9.78957 -9.72405 -9.64800 -9.48846 -9.21068 -8.56021 -7.12897 -6.11754 -4.12115 3.25037 3.34404 3.37219 4.28059 4.38253 4.84225 5.15471 5.19434 5.25120 5.30061 5.52891 5.72027 5.85397 5.86800 5.90536 5.99377 6.03054 6.14104 6.19743 6.32040 6.32798 6.45472 6.53759 6.66111 6.68321 6.74400 6.75880 6.78651 6.85749 6.91611 6.94298 7.07932 7.24773 7.32257 7.62404 7.65212 8.14997 8.36070 8.48978 8.93509 9.53082 11.01415 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028963 B = 0.007409 C = 0.006849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.531398 B = 3778.046451 C = 4086.940084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C 0.178 3.822 4 H 0.039 0.961 5 C -0.542 4.542 6 H 0.075 0.925 7 C 0.075 3.925 8 N -0.898 5.898 9 Si 0.872 3.128 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.262 1.262 13 N -0.518 5.518 14 C 0.063 3.937 15 C -0.108 4.108 16 C -0.096 4.096 17 C -0.083 4.083 18 H 0.074 0.926 19 C 0.081 3.919 20 O -0.572 6.572 21 C -0.102 4.102 22 C 0.063 3.937 23 H 0.059 0.941 24 H 0.038 0.962 25 H 0.031 0.969 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.263 0.737 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.372 0.628 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.611 5.066 8.815 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C 0.071 3.929 4 H 0.057 0.943 5 C -0.580 4.580 6 H 0.093 0.907 7 C -0.127 4.127 8 N -0.535 5.535 9 Si 0.699 3.301 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.186 1.186 13 N -0.241 5.241 14 C -0.067 4.067 15 C -0.147 4.147 16 C -0.133 4.133 17 C -0.101 4.101 18 H 0.093 0.907 19 C 0.004 3.996 20 O -0.377 6.377 21 C -0.140 4.140 22 C -0.065 4.065 23 H 0.078 0.922 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.218 0.782 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.700 4.476 8.438 14.343 hybrid contribution 0.316 0.810 -0.859 1.223 sum -10.384 5.286 7.578 13.900 Atomic orbital electron populations 1.21753 0.97874 0.99107 1.01332 1.21742 0.93388 0.98916 1.00676 1.19828 0.94325 0.90918 0.87813 0.94285 1.21679 0.90594 1.50699 0.95076 0.90671 1.25040 0.94677 0.94304 0.98709 1.69926 1.09540 1.49733 1.24333 0.86943 0.81282 0.79065 0.82804 1.20261 1.21587 1.18625 1.61969 1.56835 1.01463 1.03880 1.21735 0.94043 1.00256 0.90620 1.21966 0.98170 0.97170 0.97360 1.21106 0.98640 0.93393 1.00181 1.20937 1.01093 0.94473 0.93640 0.90722 1.22303 0.98450 0.97326 0.81571 1.86523 1.83304 1.51308 1.16553 1.20629 1.01311 0.98535 0.93481 1.20664 0.97459 0.89691 0.98663 0.92176 0.94274 0.95008 0.93018 0.92860 0.92718 0.91303 0.94994 0.92825 0.93364 0.93058 0.92121 0.94093 0.93994 0.78190 0.92644 0.91797 0.94332 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.80 37.15 0.36 -2.22 16 2 C -0.11 -2.30 5.29 -26.73 -0.14 -2.44 16 3 C 0.18 4.07 1.30 -68.87 -0.09 3.98 16 4 H 0.04 0.93 4.99 -51.93 -0.26 0.67 16 5 C -0.54 -14.58 7.70 -34.44 -0.27 -14.85 16 6 H 0.08 2.23 6.87 -52.48 -0.36 1.86 16 7 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 9 Si 0.87 21.24 26.99 -169.99 -4.59 16.65 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.26 -6.13 6.82 56.52 0.39 -5.74 16 13 N -0.52 -10.37 3.66 -232.95 -0.85 -11.22 16 14 C 0.06 1.22 3.56 -4.67 -0.02 1.21 16 15 C -0.11 -1.77 6.14 -25.54 -0.16 -1.93 16 16 C -0.10 -1.44 4.93 -27.36 -0.13 -1.58 16 17 C -0.08 -1.22 2.10 -91.09 -0.19 -1.41 16 18 H 0.07 1.25 7.15 -51.93 -0.37 0.88 16 19 C 0.08 0.97 6.30 37.16 0.23 1.21 16 20 O -0.57 -6.95 12.95 -35.23 -0.46 -7.41 16 21 C -0.10 -1.54 4.92 -29.32 -0.14 -1.68 16 22 C 0.06 1.21 4.38 -6.71 -0.03 1.18 16 23 H 0.06 1.06 7.76 -51.93 -0.40 0.66 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.05 1.11 6.25 -51.93 -0.32 0.79 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 29 H 0.07 1.45 5.29 -51.93 -0.27 1.18 16 30 H 0.03 0.67 6.39 -51.93 -0.33 0.34 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.75 7.19 -51.93 -0.37 0.38 16 34 H 0.06 0.93 7.38 -51.93 -0.38 0.55 16 35 H 0.04 0.45 8.06 -51.93 -0.42 0.03 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.37 2.64 9.12 45.56 0.42 3.05 16 38 H 0.05 0.75 7.96 -51.93 -0.41 0.33 16 39 H 0.06 0.94 7.58 -51.93 -0.39 0.55 16 40 H 0.04 0.81 7.22 -51.93 -0.37 0.43 16 41 H 0.06 1.18 7.61 -51.93 -0.40 0.78 16 LS Contribution 304.45 15.07 4.59 4.59 Total: -1.00 -29.77 304.45 -7.55 -37.32 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.35 Total: 2.83 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -0.67 Total: -16.50 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.08 Total: -37.48 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.46 Total: -7.41 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.59 Total: 16.65 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.77 -7.55 -37.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382002963.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.413 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds