Wall clock time and date at job start Sun Mar 29 2020 23:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47078 * 2 1 4 4 H 1.08998 * 109.47151 * 305.11890 * 3 2 1 5 5 C 1.50702 * 109.47017 * 185.12451 * 3 2 1 6 6 H 1.08004 * 119.99778 * 275.05494 * 5 3 2 7 7 C 1.37873 * 120.00258 * 95.05671 * 5 3 2 8 8 N 1.31521 * 120.00255 * 184.81299 * 7 5 3 9 9 Si 1.86799 * 120.00236 * 4.81479 * 7 5 3 10 10 H 1.48506 * 109.47248 * 84.85834 * 9 7 5 11 11 H 1.48497 * 109.47448 * 204.86106 * 9 7 5 12 12 H 1.48503 * 109.46957 * 324.86408 * 9 7 5 13 13 N 1.46894 * 109.47608 * 65.12144 * 3 2 1 14 14 C 1.44274 * 111.00349 * 66.04699 * 13 3 2 15 15 C 1.54062 * 111.91906 * 219.34928 * 14 13 3 16 16 C 1.54223 * 112.32391 * 318.78288 * 15 14 13 17 17 C 1.50466 * 113.07471 * 318.43404 * 16 15 14 18 18 H 1.09002 * 109.56800 * 332.27816 * 17 16 15 19 19 C 1.53001 * 109.67912 * 211.95974 * 17 16 15 20 20 O 1.42898 * 109.46957 * 65.56979 * 19 17 16 21 21 C 1.54506 * 108.84862 * 92.08293 * 17 16 15 22 22 C 1.45856 * 111.59767 * 282.81714 * 21 17 16 23 23 H 1.08996 * 109.47840 * 300.00731 * 1 2 3 24 24 H 1.09003 * 109.46848 * 60.00547 * 1 2 3 25 25 H 1.09004 * 109.47423 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47840 * 239.99269 * 2 1 3 27 27 H 1.09003 * 109.46848 * 119.99453 * 2 1 3 28 28 H 0.96993 * 120.00304 * 179.97438 * 8 7 5 29 29 H 1.09007 * 108.97346 * 339.95009 * 14 13 3 30 30 H 1.08995 * 108.97930 * 98.73904 * 14 13 3 31 31 H 1.09007 * 108.91558 * 79.58779 * 15 14 13 32 32 H 1.08998 * 108.92093 * 198.13856 * 15 14 13 33 33 H 1.09005 * 108.80591 * 197.47085 * 16 15 14 34 34 H 1.09005 * 108.61117 * 79.25982 * 16 15 14 35 35 H 1.09000 * 109.46726 * 185.57009 * 19 17 16 36 36 H 1.08994 * 109.47006 * 305.56870 * 19 17 16 37 37 H 0.96698 * 113.99871 * 179.97438 * 20 19 17 38 38 H 1.09004 * 109.05096 * 162.26769 * 21 17 16 39 39 H 1.08999 * 108.99573 * 43.32586 * 21 17 16 40 40 H 1.09005 * 108.78960 * 300.43465 * 22 21 17 41 41 H 1.09003 * 108.79514 * 182.21896 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6037 1.9821 -0.8406 5 6 3.5416 1.4444 -0.1269 6 1 4.1580 1.3349 0.7532 7 6 4.1285 1.5858 -1.3664 8 7 5.4346 1.4928 -1.4901 9 14 3.0688 1.9097 -2.8702 10 1 2.8032 3.3663 -2.9843 11 1 3.7787 1.4393 -4.0868 12 1 1.7819 1.1810 -2.7351 13 7 1.6539 2.0984 1.2564 14 6 2.3266 1.4967 2.3819 15 6 1.4013 1.3763 3.6078 16 6 0.5253 2.6300 3.8059 17 6 1.2734 3.9148 3.5742 18 1 2.3308 3.7661 3.7931 19 6 0.7107 5.0097 4.4827 20 8 0.9721 4.6771 5.8476 21 6 1.1045 4.3311 2.0959 22 6 1.9600 3.5438 1.2152 23 1 -0.3634 0.5139 0.8898 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8898 27 1 1.8932 -0.5138 0.8901 28 1 5.8475 1.5919 -2.3621 29 1 2.6709 0.5020 2.0986 30 1 3.1892 2.1077 2.6474 31 1 0.7542 0.5088 3.4782 32 1 2.0121 1.2294 4.4985 33 1 0.1362 2.6295 4.8241 34 1 -0.3129 2.5821 3.1107 35 1 1.1863 5.9607 4.2429 36 1 -0.3651 5.0925 4.3285 37 1 0.6427 5.3289 6.4813 38 1 1.3607 5.3855 1.9917 39 1 0.0644 4.1873 1.8034 40 1 2.9988 3.6913 1.5110 41 1 1.8345 3.9003 0.1928 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382002963.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:44 Heat of formation + Delta-G solvation = -84.002454 kcal Electronic energy + Delta-G solvation = -18954.690944 eV Core-core repulsion = 16253.941499 eV Total energy + Delta-G solvation = -2700.749445 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56199 -38.18118 -36.25855 -34.25718 -33.39882 -33.02236 -29.55260 -27.84390 -26.40679 -24.53881 -23.77203 -21.99760 -20.93709 -20.15088 -18.75009 -18.14602 -17.22659 -16.54471 -16.24005 -15.62180 -15.30094 -15.25538 -14.75691 -14.67758 -14.17740 -13.95016 -13.75951 -13.53619 -13.02980 -12.99866 -12.88895 -12.52749 -12.47701 -11.97260 -11.82503 -11.62975 -11.51093 -11.44086 -11.35118 -11.28981 -11.07906 -10.94392 -10.72506 -10.67558 -8.90066 -8.31266 -6.35142 1.30926 1.33460 1.44125 2.31840 3.02636 3.34174 3.37738 3.98589 4.05166 4.15485 4.31567 4.38083 4.48869 4.50807 4.58875 4.60498 4.69099 4.74117 4.79556 4.83312 4.88834 4.99287 5.03842 5.14440 5.25492 5.28820 5.34878 5.40272 5.43750 5.48146 5.49876 5.52544 5.59026 5.67186 5.71312 6.18927 6.47667 6.61431 6.75466 7.01670 7.33807 8.85673 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028963 B = 0.007409 C = 0.006849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.531398 B = 3778.046451 C = 4086.940084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.108 4.108 3 C 0.179 3.821 4 H 0.038 0.962 5 C -0.535 4.535 6 H 0.031 0.969 7 C 0.016 3.984 8 N -0.949 5.949 9 Si 0.934 3.066 10 H -0.267 1.267 11 H -0.290 1.290 12 H -0.241 1.241 13 N -0.503 5.503 14 C 0.071 3.929 15 C -0.101 4.101 16 C -0.089 4.089 17 C -0.084 4.084 18 H 0.045 0.955 19 C 0.087 3.913 20 O -0.593 6.593 21 C -0.096 4.096 22 C 0.066 3.934 23 H 0.066 0.934 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.037 0.963 27 H 0.048 0.952 28 H 0.264 0.736 29 H 0.045 0.955 30 H 0.005 0.995 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.395 0.605 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.006 0.994 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.925 5.891 9.166 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.147 4.147 3 C 0.071 3.929 4 H 0.056 0.944 5 C -0.575 4.575 6 H 0.049 0.951 7 C -0.182 4.182 8 N -0.589 5.589 9 Si 0.758 3.242 10 H -0.192 1.192 11 H -0.216 1.216 12 H -0.165 1.165 13 N -0.226 5.226 14 C -0.059 4.059 15 C -0.140 4.140 16 C -0.127 4.127 17 C -0.103 4.103 18 H 0.064 0.936 19 C 0.010 3.990 20 O -0.401 6.401 21 C -0.133 4.133 22 C -0.062 4.062 23 H 0.085 0.915 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.023 0.977 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.244 0.756 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.024 0.976 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.043 5.313 8.826 17.416 hybrid contribution 1.458 0.536 -0.856 1.774 sum -12.585 5.850 7.970 16.003 Atomic orbital electron populations 1.21638 0.94656 1.00863 1.01801 1.21647 0.96166 0.97031 0.99833 1.19791 0.91299 0.92564 0.89201 0.94391 1.21911 0.92801 1.49261 0.93478 0.95057 1.25895 0.95789 0.94384 1.02122 1.70083 1.11673 1.52030 1.25139 0.85927 0.80157 0.79526 0.78544 1.19248 1.21612 1.16469 1.62106 1.55827 1.01943 1.02738 1.21675 0.94185 0.98216 0.91794 1.21890 0.97914 0.98737 0.95423 1.21067 0.98177 0.92537 1.00921 1.20895 0.99562 0.95716 0.94080 0.93649 1.22180 0.99496 0.96247 0.81099 1.86456 1.83837 1.52793 1.17037 1.20538 1.01036 0.98809 0.92961 1.20752 0.96742 0.89518 0.99187 0.91546 0.93885 0.92671 0.94436 0.93330 0.92748 0.93604 0.97701 0.91758 0.92979 0.91952 0.91676 0.92900 0.91901 0.75565 0.90556 0.90207 0.97576 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 9.80 71.98 0.71 -3.65 16 2 C -0.11 -4.48 5.29 30.59 0.16 -4.32 16 3 C 0.18 8.20 1.30 44.17 0.06 8.25 16 4 H 0.04 1.76 4.99 -2.39 -0.01 1.75 16 5 C -0.54 -30.01 7.70 25.60 0.20 -29.81 16 6 H 0.03 1.98 6.87 -2.91 -0.02 1.96 16 7 C 0.02 0.92 5.47 84.65 0.46 1.38 16 8 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 9 Si 0.93 43.96 26.99 68.60 1.85 45.81 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 12 H -0.24 -10.48 6.82 99.48 0.68 -9.80 16 13 N -0.50 -20.06 3.66 -890.91 -3.26 -23.32 16 14 C 0.07 2.83 3.56 87.15 0.31 3.14 16 15 C -0.10 -3.21 6.14 31.37 0.19 -3.02 16 16 C -0.09 -2.48 4.93 30.19 0.15 -2.33 16 17 C -0.08 -2.31 2.10 -11.10 -0.02 -2.34 16 18 H 0.04 1.52 7.15 -2.39 -0.02 1.50 16 19 C 0.09 1.81 6.30 71.98 0.45 2.26 16 20 O -0.59 -12.71 12.95 -148.98 -1.93 -14.64 16 21 C -0.10 -2.71 4.92 28.92 0.14 -2.56 16 22 C 0.07 2.52 4.38 83.94 0.37 2.89 16 23 H 0.07 2.11 7.76 -2.39 -0.02 2.09 16 24 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.05 2.03 6.25 -2.39 -0.01 2.01 16 28 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 29 H 0.05 2.02 5.29 -2.38 -0.01 2.01 16 30 H 0.00 0.21 6.39 -2.39 -0.02 0.19 16 31 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.62 7.19 -2.38 -0.02 1.61 16 34 H 0.06 1.77 7.38 -2.38 -0.02 1.75 16 35 H 0.05 0.98 8.06 -2.39 -0.02 0.96 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.39 4.33 9.12 -74.06 -0.68 3.66 16 38 H 0.08 1.86 7.96 -2.38 -0.02 1.84 16 39 H 0.08 2.07 7.58 -2.39 -0.02 2.05 16 40 H 0.01 0.26 7.22 -2.38 -0.02 0.24 16 41 H 0.05 1.94 7.61 -2.39 -0.02 1.92 16 Total: -1.00 -66.60 304.45 0.43 -66.17 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.29 Total: 15.30 kcal Atomic # 6 Polarization: -33.29 SS G_CDS: 3.18 Total: -30.11 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -2.96 Total: -82.55 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -1.93 Total: -14.64 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.85 Total: 45.81 kcal Total: -66.60 0.43 -66.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382002963.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.830 kcal (2) G-P(sol) polarization free energy of solvation -66.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds