Wall clock time and date at job start Sun Mar 29 2020 23:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47351 * 2 1 4 4 H 1.08997 * 109.47150 * 55.18451 * 3 2 1 5 5 C 1.50700 * 109.46845 * 175.18530 * 3 2 1 6 6 H 1.08001 * 119.99825 * 120.00518 * 5 3 2 7 7 C 1.37871 * 120.00489 * 299.99452 * 5 3 2 8 8 N 1.31522 * 119.99313 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00557 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47076 * 90.00274 * 9 7 5 11 11 H 1.48497 * 109.47095 * 210.00344 * 9 7 5 12 12 H 1.48491 * 109.46852 * 329.99844 * 9 7 5 13 13 N 1.46900 * 109.46972 * 295.18317 * 3 2 1 14 14 C 1.47805 * 110.99819 * 290.77265 * 13 3 2 15 15 C 1.45869 * 112.92216 * 153.87814 * 14 13 3 16 16 C 1.54505 * 111.59150 * 61.32331 * 15 14 13 17 17 C 1.50468 * 108.85321 * 282.80924 * 16 15 14 18 18 H 1.08996 * 108.77056 * 331.24388 * 17 16 15 19 19 C 1.52994 * 108.77274 * 213.07427 * 17 16 15 20 20 O 1.42900 * 109.47535 * 65.00013 * 19 17 16 21 21 C 1.54225 * 113.06641 * 92.08995 * 17 16 15 22 22 C 1.44270 * 110.99885 * 168.80283 * 13 3 2 23 23 H 1.09003 * 109.46921 * 59.99789 * 1 2 3 24 24 H 1.08995 * 109.47507 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47315 * 300.00354 * 1 2 3 26 26 H 1.09001 * 109.47315 * 239.99646 * 2 1 3 27 27 H 1.09003 * 109.46921 * 120.00211 * 2 1 3 28 28 H 0.97005 * 119.99773 * 179.97438 * 8 7 5 29 29 H 1.09005 * 108.79459 * 274.76189 * 14 13 3 30 30 H 1.08992 * 108.79782 * 33.10308 * 14 13 3 31 31 H 1.08989 * 109.05573 * 181.87286 * 15 14 13 32 32 H 1.09000 * 109.05333 * 300.78069 * 15 14 13 33 33 H 1.08997 * 109.57789 * 42.62802 * 16 15 14 34 34 H 1.09002 * 109.57159 * 163.00418 * 16 15 14 35 35 H 1.09005 * 109.47077 * 185.00281 * 19 17 16 36 36 H 1.09006 * 109.46982 * 304.99535 * 19 17 16 37 37 H 0.96696 * 114.00145 * 179.97438 * 20 19 17 38 38 H 1.09006 * 108.96710 * 197.65883 * 21 17 16 39 39 H 1.09002 * 108.83712 * 79.12636 * 21 17 16 40 40 H 1.08999 * 108.97915 * 339.94808 * 22 13 3 41 41 H 1.08995 * 108.98339 * 98.74639 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6079 1.9806 0.8437 5 6 3.5422 1.4440 0.1193 6 1 4.1452 1.8894 -0.6582 7 6 4.1470 0.8770 1.2209 8 7 3.4127 0.3343 2.1675 9 14 6.0091 0.8795 1.3691 10 1 6.4480 2.1116 2.0721 11 1 6.4460 -0.3123 2.1396 12 1 6.6135 0.8412 0.0133 13 7 1.6476 2.1005 -1.2534 14 6 2.3876 1.5367 -2.4019 15 6 1.6683 1.6733 -3.6635 16 6 1.4205 3.1563 -4.0191 17 6 0.2824 3.6734 -3.1817 18 1 -0.3850 2.8444 -2.9466 19 6 -0.4945 4.7114 -3.9940 20 8 -1.1021 4.0769 -5.1211 21 6 0.7488 4.3221 -1.8625 22 6 1.8783 3.5230 -1.1846 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 3.8381 -0.0650 2.9425 29 1 3.3464 2.0483 -2.4872 30 1 2.5703 0.4783 -2.2165 31 1 2.2526 1.2095 -4.4582 32 1 0.7093 1.1614 -3.5836 33 1 2.3196 3.7367 -3.8119 34 1 1.1645 3.2407 -5.0752 35 1 -1.2672 5.1582 -3.3683 36 1 0.1881 5.4882 -4.3386 37 1 -1.6126 4.6765 -5.6821 38 1 -0.0985 4.3850 -1.1797 39 1 1.1063 5.3301 -2.0731 40 1 1.9449 3.8212 -0.1383 41 1 2.8217 3.7535 -1.6794 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382002986.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:46 Heat of formation + Delta-G solvation = -62.778563 kcal Electronic energy + Delta-G solvation = -18907.088989 eV Core-core repulsion = 16207.259881 eV Total energy + Delta-G solvation = -2699.829108 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.98053 -36.92964 -34.76852 -32.33592 -31.95762 -31.07848 -27.49654 -25.89179 -25.04925 -22.99832 -22.17175 -20.52289 -19.26127 -18.62326 -17.19642 -16.13999 -15.44108 -15.00906 -14.67241 -14.39522 -14.12028 -13.42939 -13.16263 -12.77221 -12.54000 -12.50543 -11.76052 -11.67317 -11.45306 -11.33186 -11.13277 -10.88133 -10.67303 -10.51676 -10.29980 -10.12784 -9.95235 -9.82175 -9.75409 -9.73541 -9.44124 -9.28480 -9.00122 -8.33264 -7.10064 -5.96489 -4.09918 3.27155 3.34730 3.37625 4.33230 4.41007 4.97592 5.16828 5.27861 5.30118 5.38070 5.51696 5.74139 5.85659 5.88725 5.92276 6.13778 6.19939 6.28580 6.41219 6.47181 6.53001 6.57696 6.63873 6.73093 6.76292 6.78813 6.89235 6.96491 7.03773 7.20641 7.24163 7.44256 7.66083 7.68254 7.80923 8.05507 8.20026 8.44316 8.55008 9.01860 9.58038 11.02488 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031884 B = 0.006810 C = 0.006353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.979343 B = 4110.348741 C = 4406.529229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.523 5.523 14 C 0.062 3.938 15 C -0.110 4.110 16 C -0.105 4.105 17 C -0.073 4.073 18 H 0.081 0.919 19 C 0.076 3.924 20 O -0.572 6.572 21 C -0.102 4.102 22 C 0.068 3.932 23 H 0.048 0.952 24 H 0.024 0.976 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.091 0.909 28 H 0.260 0.740 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.371 0.629 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.946 6.597 -9.838 13.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.108 3.892 4 H 0.055 0.945 5 C -0.581 4.581 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.247 5.247 14 C -0.066 4.066 15 C -0.148 4.148 16 C -0.142 4.142 17 C -0.092 4.092 18 H 0.100 0.900 19 C -0.002 4.002 20 O -0.376 6.376 21 C -0.141 4.141 22 C -0.061 4.061 23 H 0.067 0.933 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.217 0.783 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.149 5.881 -9.445 12.713 hybrid contribution 1.723 0.695 0.136 1.863 sum -4.426 6.575 -9.309 12.227 Atomic orbital electron populations 1.21697 0.98914 0.98318 1.00523 1.21588 0.92218 0.99247 1.01749 1.19411 0.92948 0.91321 0.85518 0.94527 1.21819 0.92841 1.37919 1.05494 0.92641 1.24922 0.97722 0.95092 0.95736 1.69884 1.34734 1.38350 1.09469 0.86694 0.86363 0.77499 0.78041 1.20803 1.21214 1.20083 1.61949 1.55669 1.02069 1.04970 1.20780 0.94396 1.00848 0.90572 1.20631 1.01124 0.95811 0.97186 1.21318 0.97637 0.96571 0.98700 1.20808 0.97033 0.97752 0.93593 0.90036 1.22433 0.95332 0.95274 0.87154 1.86530 1.70862 1.39896 1.40330 1.21968 0.99354 0.97496 0.95237 1.21624 0.94872 0.90166 0.99485 0.93291 0.95731 0.94390 0.94930 0.89104 0.92953 0.95544 0.91287 0.93103 0.91976 0.92829 0.92195 0.94233 0.94317 0.78319 0.92476 0.93313 0.92010 0.95232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.80 37.15 0.36 -2.47 16 2 C -0.11 -2.61 5.21 -26.74 -0.14 -2.75 16 3 C 0.21 5.22 1.53 -68.87 -0.11 5.12 16 4 H 0.04 0.99 7.73 -51.93 -0.40 0.59 16 5 C -0.54 -14.35 7.38 -34.44 -0.25 -14.60 16 6 H 0.06 1.49 6.44 -52.49 -0.34 1.15 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -24.83 11.29 55.43 0.63 -24.21 16 9 Si 0.89 21.12 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.52 -10.85 3.61 -232.94 -0.84 -11.69 16 14 C 0.06 1.23 3.74 -6.70 -0.03 1.20 16 15 C -0.11 -1.84 5.53 -29.32 -0.16 -2.00 16 16 C -0.10 -1.61 5.04 -27.21 -0.14 -1.74 16 17 C -0.07 -1.10 2.03 -91.25 -0.19 -1.28 16 18 H 0.08 1.40 7.38 -51.93 -0.38 1.02 16 19 C 0.08 0.93 6.18 37.15 0.23 1.16 16 20 O -0.57 -7.03 12.89 -35.23 -0.45 -7.49 16 21 C -0.10 -1.58 5.49 -25.53 -0.14 -1.72 16 22 C 0.07 1.31 4.66 -4.67 -0.02 1.29 16 23 H 0.05 0.98 7.75 -51.93 -0.40 0.58 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.76 6.28 -51.93 -0.33 0.44 16 27 H 0.09 2.41 5.96 -51.93 -0.31 2.11 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.03 0.55 6.27 -51.93 -0.33 0.23 16 30 H 0.07 1.48 5.84 -51.93 -0.30 1.18 16 31 H 0.05 0.78 8.14 -51.94 -0.42 0.36 16 32 H 0.06 1.08 7.59 -51.93 -0.39 0.69 16 33 H 0.05 0.83 7.15 -51.93 -0.37 0.46 16 34 H 0.06 0.88 7.15 -51.93 -0.37 0.51 16 35 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.37 2.70 9.12 45.56 0.42 3.11 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.66 7.98 -51.93 -0.41 0.25 16 40 H 0.06 1.27 7.33 -51.93 -0.38 0.89 16 41 H 0.03 0.58 6.50 -51.93 -0.34 0.24 16 LS Contribution 304.15 15.07 4.58 4.58 Total: -1.00 -28.20 304.15 -8.09 -36.30 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.31 Total: 2.49 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -0.67 Total: -16.07 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: -0.22 Total: -35.90 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.45 Total: -7.49 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.20 -8.09 -36.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382002986.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.482 kcal (2) G-P(sol) polarization free energy of solvation -28.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds