Wall clock time and date at job start Sun Mar 29 2020 23:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47351 * 2 1 4 4 H 1.08997 * 109.47150 * 55.18451 * 3 2 1 5 5 C 1.50700 * 109.46845 * 175.18530 * 3 2 1 6 6 H 1.08001 * 119.99825 * 120.00518 * 5 3 2 7 7 C 1.37871 * 120.00489 * 299.99452 * 5 3 2 8 8 N 1.31522 * 119.99313 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00557 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47076 * 90.00274 * 9 7 5 11 11 H 1.48497 * 109.47095 * 210.00344 * 9 7 5 12 12 H 1.48491 * 109.46852 * 329.99844 * 9 7 5 13 13 N 1.46900 * 109.46972 * 295.18317 * 3 2 1 14 14 C 1.47805 * 110.99819 * 290.77265 * 13 3 2 15 15 C 1.45869 * 112.92216 * 153.87814 * 14 13 3 16 16 C 1.54505 * 111.59150 * 61.32331 * 15 14 13 17 17 C 1.50468 * 108.85321 * 282.80924 * 16 15 14 18 18 H 1.08996 * 108.77056 * 331.24388 * 17 16 15 19 19 C 1.52994 * 108.77274 * 213.07427 * 17 16 15 20 20 O 1.42900 * 109.47535 * 65.00013 * 19 17 16 21 21 C 1.54225 * 113.06641 * 92.08995 * 17 16 15 22 22 C 1.44270 * 110.99885 * 168.80283 * 13 3 2 23 23 H 1.09003 * 109.46921 * 59.99789 * 1 2 3 24 24 H 1.08995 * 109.47507 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47315 * 300.00354 * 1 2 3 26 26 H 1.09001 * 109.47315 * 239.99646 * 2 1 3 27 27 H 1.09003 * 109.46921 * 120.00211 * 2 1 3 28 28 H 0.97005 * 119.99773 * 179.97438 * 8 7 5 29 29 H 1.09005 * 108.79459 * 274.76189 * 14 13 3 30 30 H 1.08992 * 108.79782 * 33.10308 * 14 13 3 31 31 H 1.08989 * 109.05573 * 181.87286 * 15 14 13 32 32 H 1.09000 * 109.05333 * 300.78069 * 15 14 13 33 33 H 1.08997 * 109.57789 * 42.62802 * 16 15 14 34 34 H 1.09002 * 109.57159 * 163.00418 * 16 15 14 35 35 H 1.09005 * 109.47077 * 185.00281 * 19 17 16 36 36 H 1.09006 * 109.46982 * 304.99535 * 19 17 16 37 37 H 0.96696 * 114.00145 * 179.97438 * 20 19 17 38 38 H 1.09006 * 108.96710 * 197.65883 * 21 17 16 39 39 H 1.09002 * 108.83712 * 79.12636 * 21 17 16 40 40 H 1.08999 * 108.97915 * 339.94808 * 22 13 3 41 41 H 1.08995 * 108.98339 * 98.74639 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6079 1.9806 0.8437 5 6 3.5422 1.4440 0.1193 6 1 4.1452 1.8894 -0.6582 7 6 4.1470 0.8770 1.2209 8 7 3.4127 0.3343 2.1675 9 14 6.0091 0.8795 1.3691 10 1 6.4480 2.1116 2.0721 11 1 6.4460 -0.3123 2.1396 12 1 6.6135 0.8412 0.0133 13 7 1.6476 2.1005 -1.2534 14 6 2.3876 1.5367 -2.4019 15 6 1.6683 1.6733 -3.6635 16 6 1.4205 3.1563 -4.0191 17 6 0.2824 3.6734 -3.1817 18 1 -0.3850 2.8444 -2.9466 19 6 -0.4945 4.7114 -3.9940 20 8 -1.1021 4.0769 -5.1211 21 6 0.7488 4.3221 -1.8625 22 6 1.8783 3.5230 -1.1846 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 3.8381 -0.0650 2.9425 29 1 3.3464 2.0483 -2.4872 30 1 2.5703 0.4783 -2.2165 31 1 2.2526 1.2095 -4.4582 32 1 0.7093 1.1614 -3.5836 33 1 2.3196 3.7367 -3.8119 34 1 1.1645 3.2407 -5.0752 35 1 -1.2672 5.1582 -3.3683 36 1 0.1881 5.4882 -4.3386 37 1 -1.6126 4.6765 -5.6821 38 1 -0.0985 4.3850 -1.1797 39 1 1.1063 5.3301 -2.0731 40 1 1.9449 3.8212 -0.1383 41 1 2.8217 3.7535 -1.6794 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382002986.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:45 Heat of formation + Delta-G solvation = -81.413088 kcal Electronic energy + Delta-G solvation = -18907.897043 eV Core-core repulsion = 16207.259881 eV Total energy + Delta-G solvation = -2700.637162 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.46453 -38.13066 -36.24489 -34.12917 -33.39883 -32.85840 -29.13998 -27.43586 -26.57783 -24.77382 -23.51914 -22.15945 -20.85127 -20.14027 -18.22361 -18.07888 -17.15330 -16.43288 -16.14865 -15.85378 -15.49411 -15.01307 -14.74982 -14.38160 -14.10401 -13.91716 -13.33453 -13.23655 -12.99441 -12.95031 -12.80048 -12.64663 -12.48448 -12.13168 -11.86491 -11.63677 -11.60257 -11.34364 -11.20024 -11.16833 -10.97214 -10.83778 -10.70752 -10.40971 -8.89939 -8.01838 -6.25027 1.36041 1.38360 1.46852 2.39997 3.15850 3.40574 3.44839 3.98220 4.10318 4.17173 4.36650 4.45959 4.49161 4.62042 4.69549 4.71855 4.73820 4.81575 4.87902 4.91514 4.94154 5.02288 5.13818 5.20766 5.25701 5.35732 5.44583 5.48265 5.51683 5.55822 5.56403 5.64558 5.67756 5.82771 6.10152 6.23143 6.46181 6.78128 6.98617 7.03713 7.46539 8.92570 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031884 B = 0.006810 C = 0.006353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.979343 B = 4110.348741 C = 4406.529229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.220 3.780 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.048 0.952 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.517 5.517 14 C 0.071 3.929 15 C -0.106 4.106 16 C -0.098 4.098 17 C -0.073 4.073 18 H 0.058 0.942 19 C 0.082 3.918 20 O -0.590 6.590 21 C -0.093 4.093 22 C 0.067 3.933 23 H 0.055 0.945 24 H 0.043 0.957 25 H 0.032 0.968 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.261 0.739 29 H 0.013 0.987 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.394 0.606 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 7.643 -11.485 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.113 3.887 4 H 0.021 0.979 5 C -0.589 4.589 6 H 0.066 0.934 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.771 3.229 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.198 1.198 13 N -0.241 5.241 14 C -0.057 4.057 15 C -0.144 4.144 16 C -0.135 4.135 17 C -0.092 4.092 18 H 0.077 0.923 19 C 0.005 3.995 20 O -0.399 6.399 21 C -0.131 4.131 22 C -0.063 4.063 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.243 0.757 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.057 0.943 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.546 6.947 -11.117 14.653 hybrid contribution 1.838 0.376 0.635 1.981 sum -4.707 7.323 -10.482 13.626 Atomic orbital electron populations 1.21548 0.96406 0.99646 1.00559 1.21429 0.94413 0.98366 1.00064 1.19185 0.91721 0.91601 0.86191 0.97881 1.22038 0.94052 1.37570 1.05273 0.93362 1.25612 1.01692 0.94960 0.95580 1.70008 1.36222 1.38964 1.09848 0.85760 0.81602 0.77536 0.77955 1.20385 1.20845 1.19818 1.62003 1.55366 1.02929 1.03756 1.20749 0.94241 0.99131 0.91534 1.20570 1.00600 0.97454 0.95771 1.21261 0.97723 0.95070 0.99456 1.20738 0.96819 0.97980 0.93666 0.92342 1.22276 0.95772 0.94243 0.87232 1.86460 1.71401 1.41341 1.40654 1.21851 0.97865 0.97961 0.95415 1.21692 0.96472 0.89462 0.98628 0.92570 0.93749 0.94901 0.95212 0.92036 0.92970 0.96896 0.93439 0.91457 0.92445 0.92978 0.90950 0.92984 0.92595 0.75690 0.92279 0.90721 0.94304 0.95851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.12 9.80 71.98 0.71 -4.41 16 2 C -0.10 -5.07 5.21 30.59 0.16 -4.91 16 3 C 0.22 11.07 1.53 44.17 0.07 11.14 16 4 H 0.00 0.19 7.73 -2.39 -0.02 0.17 16 5 C -0.55 -29.88 7.38 25.60 0.19 -29.69 16 6 H 0.05 2.64 6.44 -2.91 -0.02 2.62 16 7 C 0.02 1.18 5.29 84.65 0.45 1.62 16 8 N -0.91 -52.28 11.29 21.45 0.24 -52.04 16 9 Si 0.95 43.81 29.54 68.60 2.03 45.84 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 13 N -0.52 -21.73 3.61 -890.88 -3.22 -24.95 16 14 C 0.07 2.83 3.74 83.94 0.31 3.14 16 15 C -0.11 -3.43 5.53 28.92 0.16 -3.27 16 16 C -0.10 -2.77 5.04 30.29 0.15 -2.62 16 17 C -0.07 -2.03 2.03 -11.20 -0.02 -2.06 16 18 H 0.06 1.91 7.38 -2.39 -0.02 1.89 16 19 C 0.08 1.73 6.18 71.98 0.45 2.18 16 20 O -0.59 -12.56 12.89 -148.98 -1.92 -14.48 16 21 C -0.09 -2.70 5.49 31.37 0.17 -2.53 16 22 C 0.07 2.57 4.66 87.16 0.41 2.98 16 23 H 0.06 2.21 7.75 -2.39 -0.02 2.20 16 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 26 H 0.03 1.42 6.28 -2.39 -0.01 1.41 16 27 H 0.06 3.37 5.96 -2.39 -0.01 3.35 16 28 H 0.26 14.31 8.31 -92.70 -0.77 13.53 16 29 H 0.01 0.54 6.27 -2.38 -0.01 0.52 16 30 H 0.05 2.07 5.84 -2.39 -0.01 2.06 16 31 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.06 1.93 7.59 -2.39 -0.02 1.91 16 33 H 0.05 1.50 7.15 -2.39 -0.02 1.49 16 34 H 0.07 1.91 7.15 -2.39 -0.02 1.89 16 35 H 0.05 0.98 8.12 -2.38 -0.02 0.96 16 36 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.39 4.32 9.12 -74.06 -0.68 3.65 16 38 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.07 1.81 7.98 -2.39 -0.02 1.80 16 40 H 0.04 1.64 7.33 -2.39 -0.02 1.62 16 41 H 0.02 0.91 6.50 -2.39 -0.02 0.90 16 Total: -1.00 -61.08 304.15 0.65 -60.43 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.32 Total: 13.64 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 3.20 Total: -28.44 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -2.98 Total: -76.99 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -1.92 Total: -14.48 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -61.08 0.65 -60.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382002986.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.985 kcal (2) G-P(sol) polarization free energy of solvation -61.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds