Wall clock time and date at job start Sun Mar 29 2020 23:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 N 1.46910 * 109.47127 * 65.00091 * 3 2 1 14 14 C 1.44294 * 110.99924 * 66.04642 * 13 3 2 15 15 C 1.53987 * 108.31912 * 221.35362 * 14 13 3 16 16 C 1.45878 * 112.66023 * 278.60168 * 15 14 13 17 17 C 1.54527 * 111.66957 * 61.49976 * 16 15 14 18 18 H 1.08994 * 109.57471 * 42.57160 * 17 16 15 19 19 C 1.53006 * 109.56879 * 162.94516 * 17 16 15 20 20 O 1.42902 * 109.46901 * 294.99697 * 19 17 16 21 21 C 1.50536 * 108.86124 * 282.75030 * 17 16 15 22 22 C 1.47940 * 111.00156 * 193.46805 * 13 3 2 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.69926 * 341.05854 * 14 13 3 30 30 H 1.09005 * 109.69548 * 101.64526 * 14 13 3 31 31 H 1.09000 * 108.83860 * 39.41813 * 15 14 13 32 32 H 1.08992 * 108.84728 * 157.77939 * 15 14 13 33 33 H 1.08996 * 109.03652 * 182.05847 * 16 15 14 34 34 H 1.08996 * 109.04216 * 300.93620 * 16 15 14 35 35 H 1.09002 * 109.47414 * 54.99522 * 19 17 16 36 36 H 1.08999 * 109.46697 * 174.99907 * 19 17 16 37 37 H 0.96697 * 114.00445 * 180.02562 * 20 19 17 38 38 H 1.08997 * 108.79294 * 212.64454 * 21 17 16 39 39 H 1.08996 * 108.79546 * 330.97867 * 21 17 16 40 40 H 1.09009 * 108.71382 * 313.17525 * 22 13 3 41 41 H 1.09004 * 108.71672 * 71.18314 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 7 1.6515 2.0992 1.2553 14 6 2.3220 1.4980 2.3826 15 6 1.3106 1.3727 3.5370 16 6 1.1479 2.6179 4.2793 17 6 0.6084 3.7523 3.3794 18 1 -0.1841 3.3650 2.7393 19 6 0.0592 4.8821 4.2530 20 8 -1.0739 4.4104 4.9849 21 6 1.7343 4.2753 2.5280 22 6 1.8369 3.5643 1.1667 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8292 -0.0604 -2.9503 29 1 2.6893 0.5094 2.1072 30 1 3.1566 2.1273 2.6921 31 1 0.3443 1.0779 3.1278 32 1 1.6522 0.5966 4.2218 33 1 0.4507 2.4536 5.1008 34 1 2.1131 2.9169 4.6882 35 1 0.8305 5.2107 4.9495 36 1 -0.2392 5.7181 3.6204 37 1 -1.4748 5.0755 5.5610 38 1 1.5797 5.3406 2.3569 39 1 2.6731 4.1392 3.0649 40 1 2.8190 3.7673 0.7393 41 1 1.0773 3.9733 0.5004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382003004.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:48 Heat of formation + Delta-G solvation = -64.989131 kcal Electronic energy + Delta-G solvation = -18888.137446 eV Core-core repulsion = 16188.212480 eV Total energy + Delta-G solvation = -2699.924966 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.96599 -36.86923 -34.92933 -32.27945 -31.99339 -30.96020 -27.49234 -26.05751 -24.86512 -23.00056 -22.35271 -20.04598 -19.64053 -18.56786 -17.15806 -16.18681 -15.64182 -14.92350 -14.78566 -14.48764 -13.75613 -13.56267 -13.11856 -12.76641 -12.48803 -12.43171 -12.13308 -11.71616 -11.51890 -11.14950 -11.10366 -10.78797 -10.68036 -10.56607 -10.29415 -10.21983 -10.03481 -9.83797 -9.75587 -9.62322 -9.51017 -9.34025 -8.97746 -8.33279 -6.95915 -5.95574 -4.09246 3.26211 3.35049 3.38140 4.32349 4.41046 4.96314 5.06965 5.21768 5.27141 5.38131 5.52297 5.62688 5.84264 5.91299 5.96441 6.01721 6.22203 6.29850 6.40720 6.51562 6.53840 6.60381 6.62233 6.68796 6.74116 6.81398 6.85111 6.93248 7.09768 7.21513 7.24592 7.46948 7.66363 7.67230 7.83016 8.09190 8.24030 8.42753 8.64210 9.02972 9.58283 11.02772 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031024 B = 0.006864 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.305770 B = 4077.982664 C = 4456.359219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 C 0.216 3.784 4 H 0.035 0.965 5 C -0.539 4.539 6 H 0.054 0.946 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.542 5.542 14 C 0.076 3.924 15 C -0.118 4.118 16 C -0.099 4.099 17 C -0.077 4.077 18 H 0.088 0.912 19 C 0.080 3.920 20 O -0.571 6.571 21 C -0.111 4.111 22 C 0.069 3.931 23 H 0.037 0.963 24 H 0.048 0.952 25 H 0.024 0.976 26 H 0.033 0.967 27 H 0.091 0.909 28 H 0.260 0.740 29 H 0.074 0.926 30 H 0.025 0.975 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.039 0.961 36 H 0.041 0.959 37 H 0.372 0.628 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.040 0.960 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.066 6.545 10.565 13.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.110 3.890 4 H 0.053 0.947 5 C -0.579 4.579 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.266 5.266 14 C -0.053 4.053 15 C -0.156 4.156 16 C -0.136 4.136 17 C -0.096 4.096 18 H 0.107 0.893 19 C 0.003 3.997 20 O -0.376 6.376 21 C -0.149 4.149 22 C -0.059 4.059 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.217 0.783 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.375 5.830 10.123 12.859 hybrid contribution 1.916 0.723 -0.026 2.048 sum -3.459 6.553 10.097 12.524 Atomic orbital electron populations 1.21707 0.98904 0.98318 1.00550 1.21603 0.92252 0.99149 1.01775 1.19289 0.92792 0.91081 0.85828 0.94732 1.21830 0.92895 1.37782 1.05350 0.92739 1.24922 0.97691 0.95155 0.95747 1.69891 1.34606 1.38490 1.09416 0.86649 0.86403 0.77700 0.77890 1.20023 1.21011 1.21092 1.61134 1.58800 1.01627 1.05014 1.21563 0.93290 0.99834 0.90592 1.20577 1.01357 0.96404 0.97289 1.20495 0.99577 0.95665 0.97863 1.20862 0.98394 0.94401 0.95937 0.89349 1.22389 0.87101 0.96439 0.93807 1.86531 1.46898 1.42290 1.61845 1.21383 0.97858 0.98887 0.96800 1.22138 1.00130 0.89259 0.94404 0.94396 0.93251 0.95733 0.94851 0.89103 0.93007 0.90737 0.95672 0.91566 0.93585 0.92448 0.93578 0.94288 0.94079 0.78278 0.92541 0.92645 0.94165 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.80 37.16 0.36 -2.48 16 2 C -0.11 -2.60 5.15 -26.74 -0.14 -2.74 16 3 C 0.22 5.29 1.67 -68.86 -0.11 5.17 16 4 H 0.03 0.94 8.04 -51.93 -0.42 0.53 16 5 C -0.54 -14.31 6.81 -34.44 -0.23 -14.55 16 6 H 0.05 1.47 6.93 -52.49 -0.36 1.10 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.89 -24.86 11.30 55.43 0.63 -24.24 16 9 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.54 -11.25 3.38 -228.04 -0.77 -12.02 16 14 C 0.08 1.51 3.88 -4.70 -0.02 1.49 16 15 C -0.12 -1.99 5.37 -29.59 -0.16 -2.14 16 16 C -0.10 -1.49 4.72 -29.30 -0.14 -1.63 16 17 C -0.08 -1.15 2.13 -91.05 -0.19 -1.34 16 18 H 0.09 1.51 7.78 -51.93 -0.40 1.11 16 19 C 0.08 0.97 6.26 37.16 0.23 1.20 16 20 O -0.57 -6.96 12.98 -35.23 -0.46 -7.42 16 21 C -0.11 -1.70 4.83 -27.48 -0.13 -1.84 16 22 C 0.07 1.31 5.29 -2.77 -0.01 1.29 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.99 7.75 -51.93 -0.40 0.59 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.03 0.78 6.28 -51.93 -0.33 0.45 16 27 H 0.09 2.42 5.95 -51.93 -0.31 2.11 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.07 1.62 5.49 -51.93 -0.29 1.34 16 30 H 0.02 0.50 6.63 -51.93 -0.34 0.16 16 31 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.86 7.45 -51.93 -0.39 0.47 16 34 H 0.05 0.67 7.59 -51.93 -0.39 0.28 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.04 0.45 7.98 -51.93 -0.41 0.04 16 37 H 0.37 2.65 9.12 45.56 0.42 3.06 16 38 H 0.06 0.75 7.62 -51.93 -0.40 0.35 16 39 H 0.05 0.86 6.65 -51.93 -0.35 0.51 16 40 H 0.04 0.85 7.16 -51.92 -0.37 0.48 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 305.26 15.07 4.60 4.60 Total: -1.00 -28.33 305.26 -8.08 -36.41 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.41 Total: 2.41 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -0.64 Total: -15.84 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.15 Total: -36.26 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.46 Total: -7.42 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.33 -8.08 -36.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382003004.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.581 kcal (2) G-P(sol) polarization free energy of solvation -28.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds