Wall clock time and date at job start Sun Mar 29 2020 23:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 N 1.46910 * 109.47127 * 65.00091 * 3 2 1 14 14 C 1.44294 * 110.99924 * 66.04642 * 13 3 2 15 15 C 1.53987 * 108.31912 * 221.35362 * 14 13 3 16 16 C 1.45878 * 112.66023 * 278.60168 * 15 14 13 17 17 C 1.54527 * 111.66957 * 61.49976 * 16 15 14 18 18 H 1.08994 * 109.57471 * 42.57160 * 17 16 15 19 19 C 1.53006 * 109.56879 * 162.94516 * 17 16 15 20 20 O 1.42902 * 109.46901 * 294.99697 * 19 17 16 21 21 C 1.50536 * 108.86124 * 282.75030 * 17 16 15 22 22 C 1.47940 * 111.00156 * 193.46805 * 13 3 2 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.69926 * 341.05854 * 14 13 3 30 30 H 1.09005 * 109.69548 * 101.64526 * 14 13 3 31 31 H 1.09000 * 108.83860 * 39.41813 * 15 14 13 32 32 H 1.08992 * 108.84728 * 157.77939 * 15 14 13 33 33 H 1.08996 * 109.03652 * 182.05847 * 16 15 14 34 34 H 1.08996 * 109.04216 * 300.93620 * 16 15 14 35 35 H 1.09002 * 109.47414 * 54.99522 * 19 17 16 36 36 H 1.08999 * 109.46697 * 174.99907 * 19 17 16 37 37 H 0.96697 * 114.00445 * 180.02562 * 20 19 17 38 38 H 1.08997 * 108.79294 * 212.64454 * 21 17 16 39 39 H 1.08996 * 108.79546 * 330.97867 * 21 17 16 40 40 H 1.09009 * 108.71382 * 313.17525 * 22 13 3 41 41 H 1.09004 * 108.71672 * 71.18314 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 7 1.6515 2.0992 1.2553 14 6 2.3220 1.4980 2.3826 15 6 1.3106 1.3727 3.5370 16 6 1.1479 2.6179 4.2793 17 6 0.6084 3.7523 3.3794 18 1 -0.1841 3.3650 2.7393 19 6 0.0592 4.8821 4.2530 20 8 -1.0739 4.4104 4.9849 21 6 1.7343 4.2753 2.5280 22 6 1.8369 3.5643 1.1667 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8292 -0.0604 -2.9503 29 1 2.6893 0.5094 2.1072 30 1 3.1566 2.1273 2.6921 31 1 0.3443 1.0779 3.1278 32 1 1.6522 0.5966 4.2218 33 1 0.4507 2.4536 5.1008 34 1 2.1131 2.9169 4.6882 35 1 0.8305 5.2107 4.9495 36 1 -0.2392 5.7181 3.6204 37 1 -1.4748 5.0755 5.5610 38 1 1.5797 5.3406 2.3569 39 1 2.6731 4.1392 3.0649 40 1 2.8190 3.7673 0.7393 41 1 1.0773 3.9733 0.5004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382003004.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:47 Heat of formation + Delta-G solvation = -83.560531 kcal Electronic energy + Delta-G solvation = -18888.942763 eV Core-core repulsion = 16188.212480 eV Total energy + Delta-G solvation = -2700.730282 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.40666 -38.10318 -36.34994 -34.15385 -33.40547 -32.69224 -29.10963 -27.61654 -26.47265 -24.69520 -23.75204 -21.68671 -20.99169 -20.24109 -18.20583 -18.08863 -17.31599 -16.48312 -16.07749 -15.87744 -15.32377 -15.09167 -14.66155 -14.33206 -14.00009 -13.80482 -13.72642 -13.28679 -13.13823 -12.94165 -12.69056 -12.59241 -12.34796 -12.10400 -12.06765 -11.61202 -11.43746 -11.34011 -11.28696 -11.19154 -11.06600 -10.87099 -10.66399 -10.41600 -8.76330 -8.00105 -6.24455 1.35152 1.38257 1.47617 2.39968 3.15800 3.38151 3.52012 3.81807 4.11536 4.18099 4.36807 4.43899 4.51170 4.61104 4.66268 4.72693 4.73920 4.79014 4.87557 4.93309 4.99633 5.04798 5.13461 5.20620 5.27968 5.31461 5.43787 5.46613 5.52510 5.54985 5.59046 5.65263 5.69159 5.84253 6.11637 6.26888 6.46773 6.88293 7.00871 7.03839 7.46699 8.92948 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031024 B = 0.006864 C = 0.006282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.305770 B = 4077.982664 C = 4456.359219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.223 3.777 4 H -0.001 1.001 5 C -0.546 4.546 6 H 0.046 0.954 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.946 3.054 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.282 1.282 13 N -0.537 5.537 14 C 0.081 3.919 15 C -0.107 4.107 16 C -0.096 4.096 17 C -0.077 4.077 18 H 0.063 0.937 19 C 0.086 3.914 20 O -0.591 6.591 21 C -0.101 4.101 22 C 0.067 3.933 23 H 0.030 0.970 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.032 0.968 27 H 0.061 0.939 28 H 0.261 0.739 29 H 0.050 0.950 30 H 0.021 0.979 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.394 0.606 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.014 0.986 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.205 7.507 12.430 15.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.115 3.885 4 H 0.017 0.983 5 C -0.586 4.586 6 H 0.065 0.935 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.772 3.228 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.208 1.208 13 N -0.261 5.261 14 C -0.048 4.048 15 C -0.145 4.145 16 C -0.133 4.133 17 C -0.095 4.095 18 H 0.082 0.918 19 C 0.009 3.991 20 O -0.399 6.399 21 C -0.138 4.138 22 C -0.061 4.061 23 H 0.050 0.950 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.243 0.757 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.032 0.968 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.526 6.809 12.015 14.875 hybrid contribution 1.931 0.435 -0.605 2.070 sum -3.594 7.244 11.410 13.985 Atomic orbital electron populations 1.21561 0.96467 0.99646 1.00528 1.21437 0.94373 0.98236 1.00151 1.19060 0.91572 0.91389 0.86436 0.98306 1.22031 0.94055 1.37381 1.05109 0.93539 1.25618 1.01705 0.95029 0.95592 1.70015 1.36137 1.39138 1.09819 0.85701 0.81581 0.77713 0.77781 1.19752 1.20587 1.20765 1.61133 1.58544 1.02615 1.03768 1.21538 0.94072 0.98135 0.91082 1.20467 0.99586 0.98123 0.96339 1.20456 1.00303 0.94778 0.97786 1.20795 0.97320 0.95448 0.95972 0.91831 1.22252 0.87672 0.95165 0.94022 1.86462 1.47037 1.43921 1.62475 1.21277 0.98335 0.99821 0.94413 1.22210 0.98464 0.88385 0.97051 0.95046 0.92517 0.93710 0.94966 0.92076 0.92982 0.93196 0.96088 0.92700 0.92132 0.91620 0.92630 0.92526 0.92723 0.75659 0.89903 0.92528 0.96803 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.16 9.80 71.98 0.71 -4.45 16 2 C -0.10 -5.03 5.15 30.59 0.16 -4.87 16 3 C 0.22 11.24 1.67 44.16 0.07 11.32 16 4 H 0.00 -0.06 8.04 -2.39 -0.02 -0.08 16 5 C -0.55 -29.77 6.81 25.60 0.17 -29.59 16 6 H 0.05 2.55 6.93 -2.91 -0.02 2.53 16 7 C 0.02 1.11 5.29 84.65 0.45 1.56 16 8 N -0.91 -52.47 11.30 21.45 0.24 -52.23 16 9 Si 0.95 43.87 29.54 68.60 2.03 45.89 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 N -0.54 -22.62 3.38 -875.37 -2.96 -25.58 16 14 C 0.08 3.18 3.88 87.12 0.34 3.52 16 15 C -0.11 -3.45 5.37 28.74 0.15 -3.29 16 16 C -0.10 -2.66 4.72 28.93 0.14 -2.53 16 17 C -0.08 -2.10 2.13 -11.07 -0.02 -2.12 16 18 H 0.06 2.08 7.78 -2.39 -0.02 2.06 16 19 C 0.09 1.78 6.26 71.98 0.45 2.23 16 20 O -0.59 -12.48 12.98 -148.98 -1.93 -14.41 16 21 C -0.10 -2.90 4.83 30.11 0.15 -2.75 16 22 C 0.07 2.56 5.29 86.41 0.46 3.01 16 23 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 2.24 7.75 -2.39 -0.02 2.22 16 25 H 0.04 1.64 8.14 -2.38 -0.02 1.63 16 26 H 0.03 1.54 6.28 -2.39 -0.01 1.52 16 27 H 0.06 3.35 5.95 -2.39 -0.01 3.34 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.05 2.20 5.49 -2.39 -0.01 2.19 16 30 H 0.02 0.83 6.63 -2.38 -0.02 0.82 16 31 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.76 7.45 -2.39 -0.02 1.74 16 34 H 0.06 1.46 7.59 -2.39 -0.02 1.44 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 0.99 7.98 -2.39 -0.02 0.97 16 37 H 0.39 4.24 9.12 -74.06 -0.68 3.57 16 38 H 0.08 1.96 7.62 -2.39 -0.02 1.94 16 39 H 0.06 1.63 6.65 -2.39 -0.02 1.62 16 40 H 0.01 0.59 7.16 -2.38 -0.02 0.57 16 41 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -61.64 305.26 0.91 -60.73 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.32 Total: 13.56 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: 3.22 Total: -27.97 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -2.72 Total: -77.81 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -1.93 Total: -14.41 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -61.64 0.91 -60.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382003004.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.826 kcal (2) G-P(sol) polarization free energy of solvation -61.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds