Wall clock time and date at job start Sun Mar 29 2020 22:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47437 * 2 1 4 4 C 1.52995 * 109.47325 * 179.07021 * 3 2 1 5 5 H 1.09007 * 109.47077 * 305.61433 * 4 3 2 6 6 C 1.52997 * 109.47563 * 185.61030 * 4 3 2 7 7 N 1.46897 * 109.47507 * 179.97438 * 6 4 3 8 8 C 1.46902 * 111.00202 * 180.02562 * 7 6 4 9 9 C 1.52995 * 109.47006 * 184.81836 * 8 7 6 10 10 C 1.50696 * 115.55281 * 56.09146 * 9 8 7 11 11 H 1.08003 * 120.00234 * 264.70753 * 10 9 8 12 12 C 1.37877 * 120.00199 * 84.70298 * 10 9 8 13 13 N 1.31522 * 119.99920 * 1.59980 * 12 10 9 14 14 Si 1.86806 * 120.00273 * 181.59849 * 12 10 9 15 15 H 1.48500 * 109.46900 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46655 * 120.00162 * 14 12 10 17 17 H 1.48498 * 109.46966 * 240.00105 * 14 12 10 18 18 C 1.53001 * 117.50020 * 270.41790 * 9 8 7 19 19 C 1.53000 * 117.49590 * 201.76061 * 9 8 7 20 20 O 1.42900 * 109.47148 * 65.60812 * 4 3 2 21 21 C 1.42901 * 114.00117 * 254.78411 * 20 4 3 22 22 H 1.09003 * 109.46872 * 300.00084 * 1 2 3 23 23 H 1.09003 * 109.46996 * 59.99669 * 1 2 3 24 24 H 1.08998 * 109.47608 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46996 * 120.00366 * 2 1 3 26 26 H 1.09003 * 109.46872 * 239.99916 * 2 1 3 27 27 H 1.09004 * 109.47096 * 299.06853 * 3 2 1 28 28 H 1.08999 * 109.46802 * 59.06742 * 3 2 1 29 29 H 1.09005 * 109.46941 * 299.99853 * 6 4 3 30 30 H 1.09001 * 109.47018 * 59.99677 * 6 4 3 31 31 H 1.00896 * 110.99885 * 303.96084 * 7 6 4 32 32 H 1.09004 * 109.46954 * 304.81961 * 8 7 6 33 33 H 1.08995 * 109.46843 * 64.81389 * 8 7 6 34 34 H 0.96998 * 119.99984 * 179.97438 * 13 12 10 35 35 H 1.09001 * 117.49676 * 0.02562 * 18 9 8 36 36 H 1.09002 * 117.50102 * 145.02137 * 18 9 8 37 37 H 1.09002 * 117.49784 * 214.97734 * 19 9 8 38 38 H 1.09000 * 117.50245 * 359.97438 * 19 9 8 39 39 H 1.08999 * 109.46944 * 295.48921 * 21 20 4 40 40 H 1.09003 * 109.47410 * 55.49023 * 21 20 4 41 41 H 1.09002 * 109.47254 * 175.49218 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5699 1.4425 0.0234 5 1 3.9204 0.8485 0.8676 6 6 4.0779 2.8787 0.1644 7 7 5.5466 2.8787 0.1875 8 6 6.0711 4.2442 0.3229 9 6 7.5975 4.2165 0.2226 10 6 8.1554 3.5901 -1.0293 11 1 8.4481 2.5505 -1.0288 12 6 8.2922 4.3441 -2.1755 13 7 7.9653 5.6180 -2.1675 14 14 8.9419 3.5564 -3.7398 15 1 9.2342 2.1225 -3.4874 16 1 7.9215 3.6718 -4.8127 17 1 10.1856 4.2487 -4.1629 18 6 8.3874 4.0279 1.5193 19 6 8.3666 5.3929 0.8271 20 8 4.0649 0.8795 -1.1931 21 6 4.5796 -0.4462 -1.0529 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.6905 1.9515 -0.8982 28 1 1.6632 1.9610 0.8815 29 1 3.7274 3.4726 -0.6798 30 1 3.7002 3.3082 1.0924 31 1 5.8967 2.2827 0.9225 32 1 5.6660 4.8695 -0.4727 33 1 5.7778 4.6518 1.2903 34 1 8.0619 6.1486 -2.9738 35 1 7.8195 3.9231 2.4438 36 1 9.3108 3.4510 1.4668 37 1 9.2764 5.7136 0.3194 38 1 7.7852 6.1869 1.2958 39 1 5.4549 -0.4293 -0.4036 40 1 3.8152 -1.0885 -0.6156 41 1 4.8614 -0.8321 -2.0327 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382374791.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:14 Heat of formation + Delta-G solvation = -36.517372 kcal Electronic energy + Delta-G solvation = -17951.345933 eV Core-core repulsion = 15252.655595 eV Total energy + Delta-G solvation = -2698.690338 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.46947 -36.79799 -34.51010 -34.02591 -31.70899 -30.04620 -26.45273 -26.11970 -25.12690 -23.18539 -21.31821 -20.96298 -20.81543 -18.88363 -16.79318 -15.99769 -15.35829 -14.99258 -14.74725 -14.40408 -14.04959 -13.58016 -13.49436 -13.24502 -12.98531 -12.50232 -12.41754 -12.05218 -11.57937 -11.49825 -11.34020 -11.01278 -10.91248 -10.81458 -10.62186 -10.56978 -10.35263 -10.34168 -10.06558 -9.38203 -9.03149 -8.78038 -8.24032 -7.94315 -7.38267 -5.83453 -3.84604 3.42329 3.50063 3.54824 4.12878 4.56745 4.61418 4.95615 4.98405 5.16129 5.27173 5.39786 5.46893 5.51356 5.58189 5.63620 5.69957 5.78653 5.79710 5.88318 5.89554 6.00766 6.04596 6.20042 6.22106 6.26590 6.37270 6.41689 6.56926 6.70054 6.80979 6.99707 7.21071 7.57684 7.60002 7.63829 8.07094 8.09242 8.27869 8.66427 9.13203 9.78212 11.26518 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023813 B = 0.006036 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.525251 B = 4637.915093 C = 5274.559624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.136 4.136 4 C 0.095 3.905 5 H 0.055 0.945 6 C 0.056 3.944 7 N -0.656 5.656 8 C 0.109 3.891 9 C 0.049 3.951 10 C -0.459 4.459 11 H 0.057 0.943 12 C 0.067 3.933 13 N -0.889 5.889 14 Si 0.889 3.111 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.289 1.289 18 C -0.219 4.219 19 C -0.154 4.154 20 O -0.361 6.361 21 C 0.034 3.966 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.025 0.975 31 H 0.325 0.675 32 H 0.072 0.928 33 H -0.008 1.008 34 H 0.255 0.745 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.042 0.958 40 H 0.031 0.969 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.251 -9.057 5.770 15.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.174 4.174 4 C 0.036 3.964 5 H 0.073 0.927 6 C -0.074 4.074 7 N -0.285 5.285 8 C -0.020 4.020 9 C 0.049 3.951 10 C -0.497 4.497 11 H 0.076 0.924 12 C -0.134 4.134 13 N -0.528 5.528 14 Si 0.718 3.282 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.216 1.216 18 C -0.256 4.256 19 C -0.192 4.192 20 O -0.279 6.279 21 C -0.063 4.063 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.043 0.957 31 H 0.142 0.858 32 H 0.090 0.910 33 H 0.010 0.990 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.203 -8.796 4.775 15.023 hybrid contribution 0.125 -0.234 0.305 0.404 sum -11.078 -9.030 5.080 15.168 Atomic orbital electron populations 1.21768 0.96018 1.01290 1.01741 1.21559 0.95701 0.97098 1.01897 1.22046 0.95612 0.97073 1.02694 1.22139 0.92082 0.94691 0.87461 0.92723 1.22143 0.90440 0.95075 0.99743 1.60136 1.04353 1.11903 1.52148 1.21510 0.96410 0.87781 0.96315 1.18861 0.88306 0.97152 0.90805 1.20266 1.40124 0.96014 0.93329 0.92436 1.24907 0.95413 0.94717 0.98367 1.70018 1.48884 1.06106 1.27764 0.86581 0.78115 0.79531 0.83963 1.19863 1.21196 1.21574 1.23025 1.03318 1.02372 0.96897 1.22477 1.03386 0.89916 1.03447 1.88010 1.80210 1.28984 1.30655 1.22773 0.97155 0.84155 1.02217 0.92932 0.92690 0.93031 0.92523 0.91493 0.90952 0.91376 0.90659 0.95736 0.85830 0.90980 0.99017 0.93538 0.92355 0.90632 0.89870 0.92327 0.93921 0.95012 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.13 -1.29 5.08 -26.73 -0.14 -1.43 16 3 C -0.14 -1.62 4.92 -26.74 -0.13 -1.75 16 4 C 0.09 1.38 2.45 -26.74 -0.07 1.31 16 5 H 0.05 0.73 7.66 -51.93 -0.40 0.33 16 6 C 0.06 0.95 5.37 -3.83 -0.02 0.93 16 7 N -0.66 -13.36 6.06 -113.78 -0.69 -14.05 16 8 C 0.11 2.48 5.56 -3.83 -0.02 2.46 16 9 C 0.05 1.24 1.65 -155.66 -0.26 0.98 16 10 C -0.46 -12.82 8.55 -34.44 -0.29 -13.12 16 11 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 12 C 0.07 1.90 5.42 -17.82 -0.10 1.81 16 13 N -0.89 -26.00 12.74 55.43 0.71 -25.30 16 14 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 15 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 16 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 C -0.22 -4.86 9.93 -26.69 -0.27 -5.12 16 19 C -0.15 -3.73 9.27 -26.69 -0.25 -3.97 16 20 O -0.36 -6.10 9.91 -35.23 -0.35 -6.45 16 21 C 0.03 0.46 10.35 101.05 1.05 1.51 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.74 6.67 -51.93 -0.35 0.40 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.33 6.19 8.78 -39.29 -0.35 5.84 16 32 H 0.07 1.84 8.13 -51.93 -0.42 1.42 16 33 H -0.01 -0.17 8.10 -51.93 -0.42 -0.59 16 34 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 37 H 0.08 2.16 8.14 -51.93 -0.42 1.74 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.03 0.35 6.44 -51.93 -0.33 0.02 16 41 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 333.94 15.07 5.03 5.03 Total: -1.00 -29.87 333.94 -8.17 -38.04 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.73 Total: 2.84 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -0.12 Total: -17.36 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.02 Total: -39.35 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.35 Total: -6.45 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.87 -8.17 -38.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382374791.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.525 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds