Wall clock time and date at job start Sun Mar 29 2020 22:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46919 * 2 1 4 4 C 1.53002 * 109.47149 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46737 * 55.00324 * 4 3 2 6 6 C 1.52997 * 109.47022 * 175.00105 * 4 3 2 7 7 N 1.46906 * 109.46777 * 179.81255 * 6 4 3 8 8 C 1.46897 * 111.00023 * 88.00819 * 7 6 4 9 9 C 1.53000 * 109.46918 * 184.72372 * 8 7 6 10 10 C 1.50693 * 115.55401 * 304.53906 * 9 8 7 11 11 H 1.08009 * 120.00078 * 144.65829 * 10 9 8 12 12 C 1.37879 * 120.00179 * 324.66822 * 10 9 8 13 13 N 1.31514 * 119.99630 * 356.90009 * 12 10 9 14 14 Si 1.86798 * 120.00242 * 176.89897 * 12 10 9 15 15 H 1.48504 * 109.46846 * 59.99605 * 14 12 10 16 16 H 1.48490 * 109.47352 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47023 * 299.99955 * 14 12 10 18 18 C 1.53005 * 117.49568 * 158.87186 * 9 8 7 19 19 C 1.53001 * 117.49678 * 90.21500 * 9 8 7 20 20 O 1.42900 * 109.47181 * 295.00165 * 4 3 2 21 21 C 1.42908 * 113.99732 * 143.45312 * 20 4 3 22 22 H 1.08994 * 109.47216 * 299.99671 * 1 2 3 23 23 H 1.09003 * 109.47149 * 59.99728 * 1 2 3 24 24 H 1.09001 * 109.46652 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47616 * 240.00442 * 2 1 3 26 26 H 1.08997 * 109.47271 * 119.99547 * 2 1 3 27 27 H 1.09002 * 109.47139 * 60.00381 * 3 2 1 28 28 H 1.08993 * 109.47232 * 300.00016 * 3 2 1 29 29 H 1.08992 * 109.47207 * 299.81263 * 6 4 3 30 30 H 1.09004 * 109.46965 * 59.81623 * 6 4 3 31 31 H 1.00905 * 110.99427 * 211.95799 * 7 6 4 32 32 H 1.09000 * 109.47135 * 304.72426 * 8 7 6 33 33 H 1.08996 * 109.47381 * 64.72370 * 8 7 6 34 34 H 0.96998 * 119.99791 * 185.01907 * 13 12 10 35 35 H 1.09004 * 117.49835 * 359.97438 * 18 9 8 36 36 H 1.09001 * 117.49775 * 145.02309 * 18 9 8 37 37 H 1.09002 * 117.49883 * 214.97866 * 19 9 8 38 38 H 1.09001 * 117.49783 * 359.97012 * 19 9 8 39 39 H 1.09000 * 109.47285 * 305.66958 * 21 20 4 40 40 H 1.08995 * 109.46958 * 65.67239 * 21 20 4 41 41 H 1.08997 * 109.46871 * 185.66807 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9336 0.8531 -0.8410 6 6 4.0799 2.8796 -0.1250 7 7 5.5490 2.8800 -0.1199 8 6 6.0802 2.7116 -1.4791 9 6 7.6050 2.5989 -1.4203 10 6 8.3148 3.7364 -0.7325 11 1 9.2026 3.5445 -0.1481 12 6 7.8308 5.0222 -0.8491 13 7 6.7858 5.2649 -1.6097 14 14 8.6595 6.4193 0.0732 15 1 10.0754 6.5281 -0.3612 16 1 7.9535 7.6926 -0.2187 17 1 8.6089 6.1479 1.5323 18 6 8.3109 1.9402 -2.6072 19 6 8.2047 1.1991 -1.2721 20 8 4.0458 0.8734 1.2220 21 6 5.2285 0.0850 1.0737 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5137 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.7198 3.3127 -1.0582 30 1 3.7135 3.4699 0.7148 31 1 5.9088 3.7203 0.3074 32 1 5.6657 1.8057 -1.9215 33 1 5.8027 3.5726 -2.0870 34 1 6.4896 6.1779 -1.7499 35 1 7.6890 1.5868 -3.4298 36 1 9.2889 2.3294 -2.8903 37 1 9.1128 1.1011 -0.6773 38 1 7.5129 0.3586 -1.2159 39 1 5.0630 -0.6793 0.3144 40 1 6.0564 0.7256 0.7701 41 1 5.4682 -0.3925 2.0238 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382374794.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:16 Heat of formation + Delta-G solvation = -37.207549 kcal Electronic energy + Delta-G solvation = -18400.368239 eV Core-core repulsion = 15701.647973 eV Total energy + Delta-G solvation = -2698.720266 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.23259 -36.72236 -34.45913 -33.65153 -32.14801 -29.69352 -26.15679 -25.75532 -25.30401 -23.35707 -21.15913 -20.92546 -20.30353 -18.97654 -16.55029 -15.98196 -15.27881 -14.75241 -14.67132 -14.50190 -14.07250 -13.69805 -13.18287 -12.96423 -12.54787 -12.44968 -12.33549 -11.99613 -11.48920 -11.20549 -11.07506 -11.02672 -10.85032 -10.70881 -10.60223 -10.48503 -10.41437 -10.17999 -9.95456 -9.31716 -9.10843 -8.89249 -8.69379 -8.12508 -7.11288 -5.95792 -4.11685 3.26973 3.32264 3.35860 4.34172 4.37394 4.84232 5.00046 5.13322 5.21396 5.44618 5.54991 5.64871 5.70876 5.79697 5.90484 5.93587 5.97929 6.07652 6.10761 6.17434 6.23793 6.29130 6.36438 6.41898 6.46019 6.59810 6.66714 6.72691 6.79217 6.89173 6.98461 7.25972 7.37331 7.60706 7.83958 7.99575 8.34183 8.45198 8.67039 8.90679 9.48607 10.93405 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026960 B = 0.006362 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.322449 B = 4400.294553 C = 4827.801470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.119 4.119 4 C 0.099 3.901 5 H 0.053 0.947 6 C 0.041 3.959 7 N -0.670 5.670 8 C 0.101 3.899 9 C 0.060 3.940 10 C -0.472 4.472 11 H 0.058 0.942 12 C 0.066 3.934 13 N -0.889 5.889 14 Si 0.894 3.106 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.274 1.274 18 C -0.210 4.210 19 C -0.205 4.205 20 O -0.380 6.380 21 C 0.034 3.966 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.354 0.646 32 H 0.016 0.984 33 H 0.082 0.918 34 H 0.260 0.740 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.021 0.979 40 H 0.077 0.923 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.571 -6.862 1.840 11.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.157 4.157 4 C 0.040 3.960 5 H 0.071 0.929 6 C -0.090 4.090 7 N -0.302 5.302 8 C -0.028 4.028 9 C 0.059 3.941 10 C -0.510 4.510 11 H 0.076 0.924 12 C -0.135 4.135 13 N -0.528 5.528 14 Si 0.721 3.279 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.248 4.248 19 C -0.242 4.242 20 O -0.299 6.299 21 C -0.063 4.063 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.174 0.826 32 H 0.035 0.965 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.040 0.960 40 H 0.096 0.904 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.766 -7.322 2.170 11.626 hybrid contribution 0.533 1.494 -0.339 1.622 sum -8.233 -5.828 1.831 10.252 Atomic orbital electron populations 1.21774 0.96301 1.01155 1.01574 1.21466 0.95200 0.97115 1.02114 1.21733 0.94685 0.97016 1.02271 1.22130 0.92188 0.94554 0.87096 0.92905 1.22325 0.91561 0.95423 0.99703 1.60337 1.03419 1.45247 1.21160 1.21596 0.93169 0.98509 0.89543 1.18955 0.91355 0.89246 0.94558 1.20565 1.10233 0.90668 1.29501 0.92396 1.24986 0.94653 0.98689 0.95207 1.69841 1.24826 1.19912 1.38231 0.86619 0.79534 0.81184 0.80537 1.20361 1.21339 1.19989 1.22964 1.02366 1.08093 0.91412 1.22820 1.02536 0.97903 1.00938 1.87729 1.43291 1.67886 1.30999 1.22833 0.89374 0.94128 0.99926 0.92842 0.93003 0.93134 0.92586 0.91440 0.91406 0.91240 0.94661 0.92342 0.82596 0.96535 0.90043 0.92918 0.92004 0.90683 0.91074 0.91643 0.95989 0.90438 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.12 -1.47 5.83 -26.73 -0.16 -1.63 16 3 C -0.12 -1.62 4.92 -26.73 -0.13 -1.75 16 4 C 0.10 1.64 2.42 -26.73 -0.06 1.58 16 5 H 0.05 0.92 7.09 -51.93 -0.37 0.55 16 6 C 0.04 0.76 5.63 -3.82 -0.02 0.74 16 7 N -0.67 -14.46 4.73 -113.78 -0.54 -15.00 16 8 C 0.10 2.32 4.55 -3.83 -0.02 2.30 16 9 C 0.06 1.45 2.12 -155.66 -0.33 1.12 16 10 C -0.47 -12.42 8.48 -34.44 -0.29 -12.71 16 11 H 0.06 1.55 7.82 -52.48 -0.41 1.14 16 12 C 0.07 1.70 4.49 -17.82 -0.08 1.62 16 13 N -0.89 -23.37 10.18 55.43 0.56 -22.80 16 14 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 C -0.21 -4.76 9.96 -26.69 -0.27 -5.03 16 19 C -0.20 -4.48 9.93 -26.69 -0.27 -4.74 16 20 O -0.38 -6.74 9.80 -35.23 -0.35 -7.08 16 21 C 0.03 0.57 10.67 101.05 1.08 1.64 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.87 7.82 -51.93 -0.41 0.47 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.04 0.67 7.81 -51.93 -0.41 0.26 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.35 8.46 7.07 -39.29 -0.28 8.18 16 32 H 0.02 0.36 7.52 -51.93 -0.39 -0.03 16 33 H 0.08 2.09 5.84 -51.93 -0.30 1.79 16 34 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.72 8.14 -51.93 -0.42 1.29 16 37 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.02 0.34 7.97 -51.93 -0.41 -0.08 16 40 H 0.08 1.49 6.76 -51.93 -0.35 1.14 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 326.20 15.07 4.92 4.92 Total: -1.00 -25.90 326.20 -8.14 -34.04 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -7.53 Total: 8.53 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -0.18 Total: -18.01 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.03 Total: -37.80 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.35 Total: -7.08 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -25.90 -8.14 -34.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382374794.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.171 kcal (2) G-P(sol) polarization free energy of solvation -25.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds