Wall clock time and date at job start Sun Mar 29 2020 23:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47333 * 2 1 4 4 H 1.09006 * 109.46950 * 304.52189 * 3 2 1 5 5 C 1.50695 * 109.47708 * 184.51983 * 3 2 1 6 6 H 1.07998 * 120.00160 * 245.41499 * 5 3 2 7 7 C 1.37884 * 119.99936 * 65.40836 * 5 3 2 8 8 N 1.31510 * 120.00023 * 192.32375 * 7 5 3 9 9 Si 1.86798 * 119.99985 * 12.32260 * 7 5 3 10 10 H 1.48502 * 109.47299 * 95.31471 * 9 7 5 11 11 H 1.48495 * 109.47197 * 215.31571 * 9 7 5 12 12 H 1.48500 * 109.47138 * 335.31510 * 9 7 5 13 13 N 1.46896 * 109.47245 * 64.51529 * 3 2 1 14 14 C 1.46900 * 111.00340 * 257.31338 * 13 3 2 15 15 C 1.53001 * 109.47421 * 184.23519 * 14 13 3 16 16 C 1.53001 * 109.47355 * 180.02562 * 15 14 13 17 17 C 1.53174 * 109.54116 * 294.55543 * 16 15 14 18 18 C 1.53093 * 109.16033 * 183.15125 * 17 16 15 19 19 O 1.42906 * 109.41678 * 57.61168 * 18 17 16 20 20 C 1.42898 * 114.09467 * 298.84374 * 19 18 17 21 21 C 1.53092 * 109.41994 * 61.15274 * 20 19 18 22 22 H 1.08996 * 109.47547 * 296.37245 * 1 2 3 23 23 H 1.09004 * 109.47274 * 56.37246 * 1 2 3 24 24 H 1.08999 * 109.47423 * 176.36806 * 1 2 3 25 25 H 1.09001 * 109.47725 * 240.00070 * 2 1 3 26 26 H 1.08998 * 109.47136 * 119.99461 * 2 1 3 27 27 H 0.96998 * 119.99964 * 179.97438 * 8 7 5 28 28 H 1.00903 * 111.00064 * 21.26802 * 13 3 2 29 29 H 1.09003 * 109.47082 * 304.23718 * 14 13 3 30 30 H 1.09005 * 109.46932 * 64.23493 * 14 13 3 31 31 H 1.09003 * 109.47155 * 300.00154 * 15 14 13 32 32 H 1.09005 * 109.47089 * 60.00069 * 15 14 13 33 33 H 1.09000 * 109.54236 * 54.82363 * 16 15 14 34 34 H 1.08999 * 109.52458 * 303.06001 * 17 16 15 35 35 H 1.09002 * 109.52279 * 63.25236 * 17 16 15 36 36 H 1.08999 * 109.48519 * 297.62704 * 18 17 16 37 37 H 1.09004 * 109.47851 * 177.59438 * 18 17 16 38 38 H 1.09005 * 109.47851 * 301.16994 * 20 19 18 39 39 H 1.08997 * 109.49001 * 181.14675 * 20 19 18 40 40 H 1.09001 * 109.52800 * 182.48428 * 21 20 19 41 41 H 1.09007 * 109.51663 * 62.29810 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6120 1.9792 -0.8468 5 6 3.5428 1.4441 -0.1120 6 1 4.1448 1.8113 0.7060 7 6 4.1491 0.9766 -1.2587 8 7 5.4444 0.7491 -1.2717 9 14 3.1309 0.6662 -2.7936 10 1 3.1938 1.8571 -3.6786 11 1 3.6694 -0.5151 -3.5144 12 1 1.7199 0.4099 -2.4082 13 7 1.6414 2.1028 1.2502 14 6 0.4953 2.9954 1.0320 15 6 0.1768 3.7428 2.3285 16 6 -1.0173 4.6720 2.1014 17 6 -0.6326 5.7652 1.0998 18 6 -1.8064 6.7348 0.9388 19 8 -2.1464 7.2849 2.2132 20 6 -2.5597 6.3137 3.1764 21 6 -1.4163 5.3271 3.4273 22 1 -0.3634 0.4565 0.9206 23 1 -0.3634 0.5691 -0.8557 24 1 -0.3634 -1.0256 -0.0651 25 1 1.8934 -0.5138 -0.8900 26 1 1.8932 -0.5137 0.8900 27 1 5.8709 0.4199 -2.0783 28 1 1.4395 1.4242 1.9691 29 1 0.7381 3.7137 0.2488 30 1 -0.3710 2.4070 0.7296 31 1 -0.0660 3.0246 3.1117 32 1 1.0431 4.3312 2.6309 33 1 -1.8574 4.0974 1.7113 34 1 0.2390 6.3063 1.4681 35 1 -0.4005 5.3113 0.1364 36 1 -2.6656 6.2013 0.5323 37 1 -1.5231 7.5389 0.2596 38 1 -3.4288 5.7745 2.7991 39 1 -2.8193 6.8142 4.1092 40 1 -1.7444 4.5597 4.1285 41 1 -0.5605 5.8594 3.8426 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389346864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:06 Heat of formation + Delta-G solvation = -68.498552 kcal Electronic energy + Delta-G solvation = -17981.621648 eV Core-core repulsion = 15281.544502 eV Total energy + Delta-G solvation = -2700.077146 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.53151 -37.08019 -35.08698 -32.37600 -31.46379 -31.12953 -28.86905 -26.87525 -24.14686 -23.50823 -22.43812 -21.08956 -20.14659 -19.67915 -16.71005 -16.26245 -16.10203 -15.44714 -14.95227 -14.78742 -14.41420 -14.06282 -13.85481 -13.17315 -13.02392 -12.72221 -12.25956 -12.20593 -11.89921 -11.63448 -11.61672 -11.42718 -11.12785 -10.87806 -10.76442 -10.71819 -10.42982 -10.26596 -10.11552 -9.91870 -9.58477 -9.33128 -9.25311 -8.40029 -7.29470 -6.02679 -3.95657 3.27870 3.37316 3.39306 3.77081 4.44882 4.57577 4.68071 4.80765 4.93619 5.08457 5.21312 5.24068 5.34844 5.36692 5.48828 5.55535 5.67706 5.71045 5.74487 5.82770 5.86949 5.93787 5.99506 6.01299 6.07295 6.14264 6.24391 6.43805 6.48402 6.56996 6.61923 6.77172 6.89527 7.07865 7.19797 7.79568 7.98623 8.38958 8.76379 9.13877 9.63208 11.11046 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033560 B = 0.004972 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.128345 B = 5629.740007 C = 5780.654911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.151 4.151 3 C 0.192 3.808 4 H 0.022 0.978 5 C -0.497 4.497 6 H 0.080 0.920 7 C 0.069 3.931 8 N -0.898 5.898 9 Si 0.859 3.141 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.254 1.254 13 N -0.673 5.673 14 C 0.056 3.944 15 C -0.109 4.109 16 C -0.087 4.087 17 C -0.153 4.153 18 C 0.060 3.940 19 O -0.386 6.386 20 C 0.061 3.939 21 C -0.150 4.150 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.041 0.959 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.262 0.738 28 H 0.325 0.675 29 H 0.066 0.934 30 H 0.018 0.982 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.092 0.908 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.606 7.205 6.064 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.190 4.190 3 C 0.084 3.916 4 H 0.039 0.961 5 C -0.535 4.535 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.537 5.537 9 Si 0.687 3.313 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.178 1.178 13 N -0.303 5.303 14 C -0.074 4.074 15 C -0.147 4.147 16 C -0.107 4.107 17 C -0.191 4.191 18 C -0.017 4.017 19 O -0.305 6.305 20 C -0.016 4.016 21 C -0.188 4.188 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.142 0.858 29 H 0.084 0.916 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.110 0.890 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.966 7.842 5.920 18.747 hybrid contribution -1.109 -1.281 -1.188 2.069 sum -17.075 6.560 4.732 18.894 Atomic orbital electron populations 1.21943 0.98571 1.00125 1.00469 1.22621 0.92707 1.01726 1.01955 1.19576 0.96566 0.88114 0.87384 0.96051 1.21037 0.89076 1.40743 1.02638 0.90222 1.24922 0.94695 0.95046 0.98530 1.69946 1.09925 1.45582 1.28239 0.87281 0.81959 0.77875 0.84212 1.20870 1.21423 1.17801 1.60589 1.35149 1.24179 1.10340 1.22097 0.92380 0.96042 0.96845 1.21592 0.97148 0.97877 0.98083 1.21177 0.98567 0.95941 0.94967 1.22300 0.99044 0.97092 1.00616 1.22614 0.96436 0.97435 0.85167 1.87909 1.86894 1.33603 1.22124 1.22565 0.95644 0.90865 0.92520 1.22246 0.99587 0.98999 0.97981 0.93568 0.93715 0.94023 0.92108 0.92366 0.92849 0.85784 0.91558 0.96369 0.92467 0.91030 0.91505 0.90724 0.90384 0.93470 0.89015 0.93502 0.89192 0.91039 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.86 37.15 0.33 -2.32 16 2 C -0.15 -3.18 4.48 -26.73 -0.12 -3.30 16 3 C 0.19 4.46 1.74 -68.87 -0.12 4.34 16 4 H 0.02 0.52 6.21 -51.93 -0.32 0.20 16 5 C -0.50 -14.03 9.29 -34.44 -0.32 -14.35 16 6 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 7 C 0.07 1.99 5.37 -17.82 -0.10 1.90 16 8 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 9 Si 0.86 21.14 25.74 -169.99 -4.38 16.77 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.25 -5.81 5.34 56.52 0.30 -5.51 16 13 N -0.67 -13.50 6.04 -107.95 -0.65 -14.15 16 14 C 0.06 0.92 4.89 -3.82 -0.02 0.91 16 15 C -0.11 -1.47 4.98 -26.73 -0.13 -1.60 16 16 C -0.09 -0.99 2.27 -90.44 -0.21 -1.20 16 17 C -0.15 -1.77 5.10 -26.59 -0.14 -1.90 16 18 C 0.06 0.63 6.84 37.21 0.25 0.89 16 19 O -0.39 -4.60 10.77 -35.23 -0.38 -4.98 16 20 C 0.06 0.58 6.84 37.20 0.25 0.84 16 21 C -0.15 -1.51 5.42 -26.59 -0.14 -1.65 16 22 H 0.05 0.72 6.35 -51.93 -0.33 0.39 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 1.37 4.80 -51.93 -0.25 1.12 16 26 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.33 6.07 7.92 -39.29 -0.31 5.76 16 29 H 0.07 1.16 6.52 -51.93 -0.34 0.82 16 30 H 0.02 0.29 6.14 -51.93 -0.32 -0.03 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.93 6.75 -51.93 -0.35 0.58 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 308.97 15.07 4.66 4.66 Total: -1.00 -30.40 308.97 -7.80 -38.20 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -7.37 Total: 3.81 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -0.45 Total: -17.45 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.12 Total: -41.01 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.38 Total: -4.98 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.38 Total: 16.77 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.40 -7.80 -38.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389346864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.298 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds