Wall clock time and date at job start Sun Mar 29 2020 23:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47333 * 2 1 4 4 H 1.09006 * 109.46950 * 304.52189 * 3 2 1 5 5 C 1.50695 * 109.47708 * 184.51983 * 3 2 1 6 6 H 1.07998 * 120.00160 * 245.41499 * 5 3 2 7 7 C 1.37884 * 119.99936 * 65.40836 * 5 3 2 8 8 N 1.31510 * 120.00023 * 192.32375 * 7 5 3 9 9 Si 1.86798 * 119.99985 * 12.32260 * 7 5 3 10 10 H 1.48502 * 109.47299 * 95.31471 * 9 7 5 11 11 H 1.48495 * 109.47197 * 215.31571 * 9 7 5 12 12 H 1.48500 * 109.47138 * 335.31510 * 9 7 5 13 13 N 1.46896 * 109.47245 * 64.51529 * 3 2 1 14 14 C 1.46900 * 111.00340 * 257.31338 * 13 3 2 15 15 C 1.53001 * 109.47421 * 184.23519 * 14 13 3 16 16 C 1.53001 * 109.47355 * 180.02562 * 15 14 13 17 17 C 1.53174 * 109.54116 * 294.55543 * 16 15 14 18 18 C 1.53093 * 109.16033 * 183.15125 * 17 16 15 19 19 O 1.42906 * 109.41678 * 57.61168 * 18 17 16 20 20 C 1.42898 * 114.09467 * 298.84374 * 19 18 17 21 21 C 1.53092 * 109.41994 * 61.15274 * 20 19 18 22 22 H 1.08996 * 109.47547 * 296.37245 * 1 2 3 23 23 H 1.09004 * 109.47274 * 56.37246 * 1 2 3 24 24 H 1.08999 * 109.47423 * 176.36806 * 1 2 3 25 25 H 1.09001 * 109.47725 * 240.00070 * 2 1 3 26 26 H 1.08998 * 109.47136 * 119.99461 * 2 1 3 27 27 H 0.96998 * 119.99964 * 179.97438 * 8 7 5 28 28 H 1.00903 * 111.00064 * 21.26802 * 13 3 2 29 29 H 1.09003 * 109.47082 * 304.23718 * 14 13 3 30 30 H 1.09005 * 109.46932 * 64.23493 * 14 13 3 31 31 H 1.09003 * 109.47155 * 300.00154 * 15 14 13 32 32 H 1.09005 * 109.47089 * 60.00069 * 15 14 13 33 33 H 1.09000 * 109.54236 * 54.82363 * 16 15 14 34 34 H 1.08999 * 109.52458 * 303.06001 * 17 16 15 35 35 H 1.09002 * 109.52279 * 63.25236 * 17 16 15 36 36 H 1.08999 * 109.48519 * 297.62704 * 18 17 16 37 37 H 1.09004 * 109.47851 * 177.59438 * 18 17 16 38 38 H 1.09005 * 109.47851 * 301.16994 * 20 19 18 39 39 H 1.08997 * 109.49001 * 181.14675 * 20 19 18 40 40 H 1.09001 * 109.52800 * 182.48428 * 21 20 19 41 41 H 1.09007 * 109.51663 * 62.29810 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6120 1.9792 -0.8468 5 6 3.5428 1.4441 -0.1120 6 1 4.1448 1.8113 0.7060 7 6 4.1491 0.9766 -1.2587 8 7 5.4444 0.7491 -1.2717 9 14 3.1309 0.6662 -2.7936 10 1 3.1938 1.8571 -3.6786 11 1 3.6694 -0.5151 -3.5144 12 1 1.7199 0.4099 -2.4082 13 7 1.6414 2.1028 1.2502 14 6 0.4953 2.9954 1.0320 15 6 0.1768 3.7428 2.3285 16 6 -1.0173 4.6720 2.1014 17 6 -0.6326 5.7652 1.0998 18 6 -1.8064 6.7348 0.9388 19 8 -2.1464 7.2849 2.2132 20 6 -2.5597 6.3137 3.1764 21 6 -1.4163 5.3271 3.4273 22 1 -0.3634 0.4565 0.9206 23 1 -0.3634 0.5691 -0.8557 24 1 -0.3634 -1.0256 -0.0651 25 1 1.8934 -0.5138 -0.8900 26 1 1.8932 -0.5137 0.8900 27 1 5.8709 0.4199 -2.0783 28 1 1.4395 1.4242 1.9691 29 1 0.7381 3.7137 0.2488 30 1 -0.3710 2.4070 0.7296 31 1 -0.0660 3.0246 3.1117 32 1 1.0431 4.3312 2.6309 33 1 -1.8574 4.0974 1.7113 34 1 0.2390 6.3063 1.4681 35 1 -0.4005 5.3113 0.1364 36 1 -2.6656 6.2013 0.5323 37 1 -1.5231 7.5389 0.2596 38 1 -3.4288 5.7745 2.7991 39 1 -2.8193 6.8142 4.1092 40 1 -1.7444 4.5597 4.1285 41 1 -0.5605 5.8594 3.8426 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389346864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:06 Heat of formation + Delta-G solvation = -89.565446 kcal Electronic energy + Delta-G solvation = -17982.535177 eV Core-core repulsion = 15281.544502 eV Total energy + Delta-G solvation = -2700.990675 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.39886 -38.62385 -36.24457 -34.36436 -32.90348 -31.97663 -30.27734 -28.51969 -25.35767 -24.46371 -23.97151 -22.30831 -21.64405 -20.83896 -18.80104 -17.21026 -16.91935 -16.72212 -16.70669 -15.90133 -15.63572 -15.30323 -15.05975 -14.86054 -14.35688 -14.06817 -13.74364 -13.47120 -13.10088 -13.06154 -12.96960 -12.64732 -12.35713 -12.31372 -12.16547 -12.10646 -11.74546 -11.68513 -11.30148 -11.25313 -11.17170 -11.03930 -10.58487 -10.37056 -8.90312 -8.25814 -6.23913 1.32684 1.36391 1.45663 2.36290 3.01235 3.07702 3.45983 3.78312 3.90354 4.03622 4.13117 4.24183 4.31739 4.34983 4.41577 4.45631 4.51181 4.54801 4.68792 4.72401 4.80149 4.82476 4.84781 4.95078 5.00890 5.10123 5.12572 5.14306 5.18394 5.22336 5.32046 5.36808 5.52117 5.55032 5.74997 6.09879 6.30594 6.75735 6.82388 6.87296 7.39998 8.92047 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033560 B = 0.004972 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.128345 B = 5629.740007 C = 5780.654911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.149 4.149 3 C 0.198 3.802 4 H 0.020 0.980 5 C -0.505 4.505 6 H 0.028 0.972 7 C 0.010 3.990 8 N -0.951 5.951 9 Si 0.928 3.072 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.223 1.223 13 N -0.690 5.690 14 C 0.059 3.941 15 C -0.100 4.100 16 C -0.083 4.083 17 C -0.154 4.154 18 C 0.061 3.939 19 O -0.407 6.407 20 C 0.057 3.943 21 C -0.147 4.147 22 H 0.062 0.938 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.263 0.737 28 H 0.334 0.666 29 H 0.052 0.948 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.053 6.900 5.873 22.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.189 4.189 3 C 0.089 3.911 4 H 0.037 0.963 5 C -0.543 4.543 6 H 0.047 0.953 7 C -0.187 4.187 8 N -0.592 5.592 9 Si 0.752 3.248 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.145 1.145 13 N -0.320 5.320 14 C -0.070 4.070 15 C -0.138 4.138 16 C -0.102 4.102 17 C -0.191 4.191 18 C -0.015 4.015 19 O -0.326 6.326 20 C -0.019 4.019 21 C -0.184 4.184 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.152 0.848 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.123 0.877 40 H 0.106 0.894 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.445 7.545 5.756 21.637 hybrid contribution 0.047 -1.139 -1.009 1.523 sum -19.398 6.406 4.747 20.973 Atomic orbital electron populations 1.21845 0.94890 1.01943 1.01518 1.22468 0.95928 0.99377 1.01083 1.19349 0.93074 0.90002 0.88708 0.96253 1.21368 0.91942 1.39845 1.01184 0.95328 1.25805 0.95799 0.94930 1.02126 1.70109 1.12236 1.47487 1.29331 0.86172 0.81754 0.77588 0.79246 1.20736 1.21288 1.14545 1.60395 1.37688 1.24607 1.09327 1.22124 0.91442 0.95331 0.98084 1.21496 0.97485 0.97990 0.96797 1.21139 0.97751 0.95473 0.95790 1.22284 0.99077 0.97415 1.00352 1.22656 0.96320 0.97503 0.85071 1.87888 1.87036 1.34844 1.22829 1.22731 0.95678 0.90678 0.92827 1.22217 0.99471 0.99398 0.97356 0.91913 0.93369 0.91773 0.93616 0.92805 0.92794 0.84825 0.92931 0.94594 0.91260 0.92922 0.90286 0.92394 0.90930 0.92098 0.88371 0.92137 0.87719 0.89386 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 8.86 71.98 0.64 -3.74 16 2 C -0.15 -5.99 4.48 30.59 0.14 -5.85 16 3 C 0.20 9.06 1.74 44.17 0.08 9.13 16 4 H 0.02 0.90 6.21 -2.38 -0.01 0.89 16 5 C -0.50 -29.39 9.29 25.60 0.24 -29.15 16 6 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 7 C 0.01 0.58 5.37 84.66 0.45 1.04 16 8 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 9 Si 0.93 43.73 25.74 68.60 1.77 45.49 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.22 -9.30 5.34 99.48 0.53 -8.77 16 13 N -0.69 -27.20 6.04 -495.45 -2.99 -30.19 16 14 C 0.06 1.85 4.89 86.30 0.42 2.27 16 15 C -0.10 -2.53 4.98 30.59 0.15 -2.37 16 16 C -0.08 -1.69 2.27 -10.68 -0.02 -1.71 16 17 C -0.15 -3.37 5.10 30.68 0.16 -3.21 16 18 C 0.06 1.17 6.84 72.01 0.49 1.66 16 19 O -0.41 -8.89 10.77 -148.98 -1.60 -10.49 16 20 C 0.06 0.94 6.84 72.01 0.49 1.44 16 21 C -0.15 -2.59 5.42 30.68 0.17 -2.42 16 22 H 0.06 1.69 6.35 -2.39 -0.02 1.67 16 23 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 24 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.05 1.95 4.80 -2.39 -0.01 1.94 16 26 H 0.05 2.17 8.05 -2.39 -0.02 2.15 16 27 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 28 H 0.33 12.05 7.92 -89.69 -0.71 11.34 16 29 H 0.05 1.78 6.52 -2.39 -0.02 1.77 16 30 H 0.04 1.01 6.14 -2.38 -0.01 1.00 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.65 6.75 -2.39 -0.02 1.64 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 37 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.06 1.22 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -67.66 308.97 0.97 -66.69 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.10 Total: 21.71 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 3.40 Total: -32.93 kcal Atomic # 7 Polarization: -87.78 SS G_CDS: -2.69 Total: -90.47 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -1.60 Total: -10.49 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.77 Total: 45.49 kcal Total: -67.66 0.97 -66.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389346864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.876 kcal (2) G-P(sol) polarization free energy of solvation -67.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds