Wall clock time and date at job start Sun Mar 29 2020 23:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47527 * 2 1 4 4 H 1.09000 * 109.46841 * 185.18138 * 3 2 1 5 5 C 1.50703 * 109.46777 * 305.17417 * 3 2 1 6 6 H 1.08001 * 119.99552 * 119.99945 * 5 3 2 7 7 C 1.37870 * 120.00197 * 300.00219 * 5 3 2 8 8 N 1.31520 * 119.99868 * 179.97438 * 7 5 3 9 9 Si 1.86805 * 120.00134 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.46695 * 90.00443 * 9 7 5 11 11 H 1.48502 * 109.47042 * 210.00135 * 9 7 5 12 12 H 1.48494 * 109.46997 * 330.00167 * 9 7 5 13 13 N 1.46900 * 109.47092 * 65.17436 * 3 2 1 14 14 C 1.46903 * 110.99487 * 85.90794 * 13 3 2 15 15 C 1.53007 * 109.46578 * 174.84743 * 14 13 3 16 16 C 1.52998 * 109.46959 * 179.97438 * 15 14 13 17 17 C 1.53177 * 109.54468 * 294.55929 * 16 15 14 18 18 C 1.53100 * 109.16352 * 183.15411 * 17 16 15 19 19 O 1.42904 * 109.41371 * 57.60619 * 18 17 16 20 20 C 1.42903 * 114.09354 * 298.83727 * 19 18 17 21 21 C 1.53093 * 109.41608 * 61.16828 * 20 19 18 22 22 H 1.08999 * 109.46570 * 54.85847 * 1 2 3 23 23 H 1.09000 * 109.46967 * 294.86142 * 1 2 3 24 24 H 1.09000 * 109.47407 * 174.85878 * 1 2 3 25 25 H 1.09008 * 109.47213 * 119.99882 * 2 1 3 26 26 H 1.09003 * 109.47077 * 239.99508 * 2 1 3 27 27 H 0.96999 * 119.99824 * 179.97438 * 8 7 5 28 28 H 1.00898 * 110.99816 * 321.95269 * 13 3 2 29 29 H 1.08994 * 109.46864 * 294.84073 * 14 13 3 30 30 H 1.08994 * 109.47486 * 54.84761 * 14 13 3 31 31 H 1.09004 * 109.46869 * 299.99833 * 15 14 13 32 32 H 1.08994 * 109.47198 * 59.99841 * 15 14 13 33 33 H 1.09011 * 109.54263 * 54.82034 * 16 15 14 34 34 H 1.09004 * 109.51578 * 303.05390 * 17 16 15 35 35 H 1.08992 * 109.52418 * 63.24152 * 17 16 15 36 36 H 1.09000 * 109.47466 * 297.61885 * 18 17 16 37 37 H 1.09002 * 109.47520 * 177.58933 * 18 17 16 38 38 H 1.09000 * 109.48763 * 301.17929 * 20 19 18 39 39 H 1.09002 * 109.48760 * 181.14726 * 20 19 18 40 40 H 1.08999 * 109.52555 * 182.47995 * 21 20 19 41 41 H 1.08996 * 109.52467 * 62.28750 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1261 1.4437 -0.0928 5 6 1.4359 2.1889 -1.1614 6 1 0.8268 3.0628 -0.9835 7 6 1.6606 1.7561 -2.4510 8 7 1.1328 2.4072 -3.4645 9 14 2.7146 0.2448 -2.7588 10 1 1.8540 -0.9654 -2.7672 11 1 3.3969 0.3761 -4.0712 12 1 3.7305 0.1224 -1.6827 13 7 1.6551 2.0980 1.2570 14 6 2.6441 1.8365 2.3114 15 6 2.2784 2.6366 3.5632 16 6 3.3080 2.3638 4.6616 17 6 3.2217 0.8963 5.0918 18 6 4.1995 0.6520 6.2443 19 8 3.8912 1.5358 7.3241 20 6 4.0016 2.9217 6.9934 21 6 3.0158 3.2572 5.8711 22 1 -0.3632 0.5915 -0.8404 23 1 -0.3633 0.4321 0.9324 24 1 -0.3634 -1.0235 -0.0921 25 1 1.8934 -0.5138 0.8901 26 1 1.8933 -0.5139 -0.8900 27 1 1.2912 2.1029 -4.3718 28 1 0.7326 1.8102 1.5470 29 1 2.6493 0.7727 2.5488 30 1 3.6329 2.1362 1.9645 31 1 2.2731 3.7005 3.3257 32 1 1.2896 2.3368 3.9101 33 1 4.3085 2.5764 4.2845 34 1 2.2070 0.6725 5.4214 35 1 3.4824 0.2541 4.2506 36 1 5.2178 0.8371 5.9023 37 1 4.1115 -0.3803 6.5829 38 1 5.0173 3.1365 6.6613 39 1 3.7712 3.5246 7.8717 40 1 3.1293 4.3034 5.5872 41 1 1.9971 3.0810 6.2164 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389346867.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:08 Heat of formation + Delta-G solvation = -65.913868 kcal Electronic energy + Delta-G solvation = -17968.761071 eV Core-core repulsion = 15268.796005 eV Total energy + Delta-G solvation = -2699.965065 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.56710 -37.10772 -35.18805 -32.46928 -31.37605 -31.14962 -28.63864 -26.56258 -24.13180 -23.56189 -23.14745 -21.21415 -20.08747 -19.45927 -16.44003 -16.27914 -16.13473 -15.38123 -15.04415 -14.89695 -14.60375 -13.83162 -13.74887 -13.36934 -12.97667 -12.69729 -12.46960 -12.37983 -12.06382 -11.72524 -11.44329 -11.29696 -11.02442 -10.84948 -10.69946 -10.54803 -10.46557 -10.27237 -10.17641 -9.85460 -9.60296 -9.33513 -9.09616 -8.52313 -7.36442 -6.03073 -3.98565 3.26301 3.35511 3.38202 3.73254 4.41746 4.55241 4.64734 4.77766 4.88844 5.05684 5.18432 5.26959 5.29825 5.34614 5.48598 5.51293 5.63092 5.68883 5.82888 5.87911 5.90131 5.96799 5.98176 6.01781 6.11636 6.18332 6.24015 6.46742 6.51108 6.56287 6.80004 6.84078 7.01545 7.03950 7.28132 7.74939 7.95481 8.37539 8.72809 9.08548 9.60237 11.10431 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.041429 B = 0.004701 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.690510 B = 5955.314390 C = 6108.595860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.158 4.158 3 C 0.185 3.815 4 H 0.031 0.969 5 C -0.489 4.489 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.902 5.902 9 Si 0.881 3.119 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.271 1.271 13 N -0.674 5.674 14 C 0.057 3.943 15 C -0.108 4.108 16 C -0.089 4.089 17 C -0.153 4.153 18 C 0.060 3.940 19 O -0.387 6.387 20 C 0.060 3.940 21 C -0.150 4.150 22 H 0.081 0.919 23 H 0.040 0.960 24 H 0.029 0.971 25 H 0.031 0.969 26 H 0.048 0.952 27 H 0.262 0.738 28 H 0.330 0.670 29 H 0.018 0.982 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.894 -2.658 18.055 18.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.197 4.197 3 C 0.076 3.924 4 H 0.049 0.951 5 C -0.528 4.528 6 H 0.099 0.901 7 C -0.132 4.132 8 N -0.541 5.541 9 Si 0.712 3.288 10 H -0.207 1.207 11 H -0.225 1.225 12 H -0.196 1.196 13 N -0.304 5.304 14 C -0.073 4.073 15 C -0.146 4.146 16 C -0.108 4.108 17 C -0.190 4.190 18 C -0.016 4.016 19 O -0.306 6.306 20 C -0.016 4.016 21 C -0.188 4.188 22 H 0.100 0.900 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.149 0.851 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.099 -2.096 17.855 18.687 hybrid contribution 0.463 -1.814 -0.482 1.934 sum 5.562 -3.910 17.373 18.657 Atomic orbital electron populations 1.21647 0.95783 0.99564 1.02479 1.22492 0.97277 1.01122 0.98805 1.19699 0.95843 0.88178 0.88682 0.95105 1.20917 1.31061 1.12667 0.88126 0.90079 1.24897 0.95563 0.96604 0.96185 1.69885 1.45096 1.40283 0.98792 0.86966 0.81157 0.83930 0.76791 1.20660 1.22453 1.19634 1.60608 1.04091 1.62686 1.03023 1.21988 0.97255 0.96289 0.91792 1.21575 0.97832 1.01438 0.93747 1.21191 1.00177 0.94375 0.95015 1.22306 1.00770 0.97341 0.98619 1.22599 0.97345 0.93981 0.87724 1.87905 1.90400 1.15975 1.36304 1.22584 0.98176 0.82544 0.98342 1.22243 1.00540 1.00283 0.95729 0.90011 0.94084 0.95139 0.95001 0.93395 0.92761 0.85107 0.96435 0.91890 0.91016 0.92388 0.91118 0.91109 0.90558 0.93329 0.89140 0.93344 0.89136 0.90758 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.40 37.16 0.35 -2.41 16 2 C -0.16 -3.38 5.22 -26.73 -0.14 -3.52 16 3 C 0.19 4.32 1.93 -68.86 -0.13 4.19 16 4 H 0.03 0.76 6.76 -51.93 -0.35 0.41 16 5 C -0.49 -13.55 7.83 -34.44 -0.27 -13.82 16 6 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 7 C 0.07 1.95 5.42 -17.82 -0.10 1.86 16 8 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 9 Si 0.88 21.90 24.32 -169.99 -4.13 17.76 16 10 H -0.28 -6.79 6.92 56.52 0.39 -6.40 16 11 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 13 N -0.67 -13.57 6.21 -107.95 -0.67 -14.25 16 14 C 0.06 0.93 5.28 -3.82 -0.02 0.91 16 15 C -0.11 -1.45 4.99 -26.73 -0.13 -1.58 16 16 C -0.09 -0.99 2.27 -90.44 -0.21 -1.20 16 17 C -0.15 -1.65 5.10 -26.59 -0.14 -1.78 16 18 C 0.06 0.60 6.84 37.21 0.25 0.86 16 19 O -0.39 -4.46 10.77 -35.23 -0.38 -4.84 16 20 C 0.06 0.57 6.84 37.21 0.25 0.83 16 21 C -0.15 -1.49 5.42 -26.59 -0.14 -1.63 16 22 H 0.08 1.88 6.85 -51.93 -0.36 1.52 16 23 H 0.04 0.73 6.63 -51.93 -0.34 0.39 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.03 0.61 7.50 -51.92 -0.39 0.22 16 26 H 0.05 1.09 3.42 -51.93 -0.18 0.92 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.33 6.32 6.70 -39.29 -0.26 6.06 16 29 H 0.02 0.28 6.05 -51.93 -0.31 -0.04 16 30 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.84 6.75 -51.93 -0.35 0.49 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 306.89 15.07 4.62 4.62 Total: -1.00 -29.82 306.89 -7.41 -37.23 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.21 Total: 3.40 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -0.42 Total: -17.31 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.10 Total: -40.88 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.38 Total: -4.84 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.13 Total: 17.76 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.82 -7.41 -37.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389346867.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.683 kcal (2) G-P(sol) polarization free energy of solvation -29.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds