Wall clock time and date at job start Sun Mar 29 2020 23:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46772 * 2 1 4 4 H 1.08999 * 109.47029 * 56.54046 * 3 2 1 5 5 C 1.53005 * 109.47181 * 176.53515 * 3 2 1 6 6 N 1.46895 * 109.47323 * 296.54024 * 3 2 1 7 7 C 1.46904 * 110.99962 * 169.93955 * 6 3 2 8 8 C 1.52997 * 109.46998 * 282.89490 * 7 6 3 9 9 O 1.42903 * 109.46939 * 67.62382 * 8 7 6 10 10 C 1.46904 * 110.99972 * 293.89236 * 6 3 2 11 11 C 1.53002 * 109.47294 * 163.12908 * 10 6 3 12 12 C 1.50700 * 115.54954 * 148.41085 * 11 10 6 13 13 H 1.07998 * 119.99926 * 118.67556 * 12 11 10 14 14 C 1.37876 * 119.99705 * 298.67008 * 12 11 10 15 15 N 1.31516 * 120.00409 * 353.33684 * 14 12 11 16 16 Si 1.86798 * 119.99814 * 173.33832 * 14 12 11 17 17 H 1.48500 * 109.47335 * 89.99839 * 16 14 12 18 18 H 1.48499 * 109.47002 * 209.99992 * 16 14 12 19 19 H 1.48501 * 109.47014 * 329.99834 * 16 14 12 20 20 C 1.52992 * 117.49848 * 2.69588 * 11 10 6 21 21 C 1.52992 * 60.00136 * 252.51665 * 20 11 10 22 22 H 1.09001 * 109.47064 * 54.97019 * 1 2 3 23 23 H 1.09004 * 109.47471 * 294.97001 * 1 2 3 24 24 H 1.09001 * 109.47194 * 174.96541 * 1 2 3 25 25 H 1.09000 * 109.47215 * 119.99534 * 2 1 3 26 26 H 1.08996 * 109.47507 * 240.00263 * 2 1 3 27 27 H 1.08999 * 109.46705 * 60.00333 * 5 3 2 28 28 H 1.09000 * 109.46912 * 179.97438 * 5 3 2 29 29 H 1.08994 * 109.47329 * 300.00776 * 5 3 2 30 30 H 1.08993 * 109.47476 * 42.89962 * 7 6 3 31 31 H 1.09000 * 109.46928 * 162.89895 * 7 6 3 32 32 H 1.09006 * 109.47060 * 187.61639 * 8 7 6 33 33 H 1.09002 * 109.47340 * 307.62092 * 8 7 6 34 34 H 0.96700 * 113.99780 * 179.97438 * 9 8 7 35 35 H 1.09007 * 109.47065 * 283.12508 * 10 6 3 36 36 H 1.08996 * 109.47162 * 43.11869 * 10 6 3 37 37 H 0.96998 * 120.00275 * 185.00697 * 15 14 12 38 38 H 1.09005 * 117.49755 * 0.02562 * 20 11 10 39 39 H 1.08998 * 117.49871 * 145.02031 * 20 11 10 40 40 H 1.09000 * 117.49916 * 252.50836 * 21 20 11 41 41 H 1.09004 * 117.52161 * 107.48723 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6268 1.9739 0.8573 5 6 3.5675 1.4435 0.0872 6 7 1.6197 2.1105 -1.2390 7 6 1.8810 3.5546 -1.1732 8 6 0.8128 4.2272 -0.3087 9 8 0.9650 3.8075 1.0488 10 6 2.2742 1.5098 -2.4090 11 6 1.5253 1.9196 -3.6787 12 6 2.3724 2.0555 -4.9177 13 1 2.1797 1.4278 -5.7751 14 6 3.3934 2.9812 -4.9565 15 7 3.5459 3.8340 -3.9670 16 14 4.5601 3.0243 -6.4147 17 1 4.0230 3.9418 -7.4515 18 1 5.8920 3.5066 -5.9689 19 1 4.6929 1.6587 -6.9829 20 6 0.3418 2.8765 -3.5231 21 6 0.0958 1.4030 -3.8534 22 1 -0.3633 0.5899 -0.8415 23 1 -0.3634 0.4338 0.9316 24 1 -0.3634 -1.0237 -0.0902 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.9806 0.9121 -0.7702 28 1 3.9307 2.4712 0.0867 29 1 3.8793 0.9479 1.0065 30 1 2.8641 3.7264 -0.7353 31 1 1.8525 3.9751 -2.1784 32 1 0.9253 5.3098 -0.3689 33 1 -0.1766 3.9442 -0.6678 34 1 0.3197 4.1959 1.6553 35 1 3.3055 1.8581 -2.4671 36 1 2.2623 0.4240 -2.3144 37 1 4.2174 4.5315 -4.0269 38 1 0.0969 3.2144 -2.5161 39 1 0.1757 3.6048 -4.3168 40 1 -0.2321 1.1619 -4.8645 41 1 -0.3110 0.7709 -3.0640 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389362010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:11 Heat of formation + Delta-G solvation = -22.797523 kcal Electronic energy + Delta-G solvation = -19360.586669 eV Core-core repulsion = 16662.491269 eV Total energy + Delta-G solvation = -2698.095400 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.72477 -36.19245 -35.42392 -32.21663 -31.91786 -29.21827 -28.14045 -25.73747 -24.31636 -23.17975 -21.43124 -20.65438 -19.58367 -17.88044 -17.01613 -16.32664 -15.28031 -14.66910 -14.48075 -14.27906 -13.43608 -13.38171 -13.12004 -12.85717 -12.56307 -12.34913 -11.96204 -11.42421 -11.37142 -11.02759 -10.95645 -10.82603 -10.63881 -10.63109 -10.44600 -10.26080 -10.09236 -9.86329 -9.83607 -9.28899 -9.08867 -8.81502 -8.41639 -7.84896 -7.17365 -6.01992 -4.04917 3.28426 3.36075 3.39943 4.40271 4.77262 4.85756 5.22690 5.43346 5.60553 5.68130 5.76190 5.81837 5.92957 5.96203 6.09641 6.15361 6.22441 6.36179 6.39425 6.47979 6.55369 6.58337 6.61907 6.72359 6.82703 6.85129 6.96366 7.01307 7.04067 7.23864 7.33398 7.39976 7.64368 7.69747 7.91347 7.99326 8.17816 8.28155 8.60719 8.95823 9.57490 11.04413 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024545 B = 0.008539 C = 0.008184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.500848 B = 3278.202686 C = 3420.613942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C 0.070 3.930 4 H 0.102 0.898 5 C -0.179 4.179 6 N -0.520 5.520 7 C 0.050 3.950 8 C 0.078 3.922 9 O -0.569 6.569 10 C 0.096 3.904 11 C 0.051 3.949 12 C -0.490 4.490 13 H 0.057 0.943 14 C 0.071 3.929 15 N -0.879 5.879 16 Si 0.888 3.112 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.180 4.180 21 C -0.205 4.205 22 H 0.071 0.929 23 H 0.042 0.958 24 H 0.036 0.964 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.032 0.968 31 H 0.132 0.868 32 H 0.036 0.964 33 H 0.048 0.952 34 H 0.361 0.639 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.259 0.741 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.084 -1.284 8.638 9.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C -0.039 4.039 4 H 0.119 0.881 5 C -0.238 4.238 6 N -0.244 5.244 7 C -0.078 4.078 8 C 0.001 3.999 9 O -0.374 6.374 10 C -0.031 4.031 11 C 0.050 3.950 12 C -0.529 4.529 13 H 0.075 0.925 14 C -0.131 4.131 15 N -0.517 5.517 16 Si 0.716 3.284 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.218 4.218 21 C -0.242 4.242 22 H 0.090 0.910 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.150 0.850 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.207 0.793 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.919 -1.585 8.399 9.403 hybrid contribution 1.106 0.612 -0.531 1.371 sum -2.814 -0.973 7.868 8.413 Atomic orbital electron populations 1.21624 0.95805 1.00050 1.02133 1.21578 0.96426 0.96541 1.00644 1.21989 0.92165 0.94670 0.95070 0.88074 1.22405 0.99018 1.01602 1.00807 1.62231 1.57908 1.02442 1.01770 1.22437 0.94755 0.88979 1.01602 1.22486 0.99924 0.96309 0.81230 1.86541 1.59009 1.72521 1.19354 1.21635 0.97514 0.95930 0.88000 1.18888 0.85130 0.97527 0.93404 1.20591 1.13794 1.20046 0.98430 0.92488 1.24920 0.96911 0.95535 0.95726 1.69860 1.34501 1.16248 1.31062 0.86659 0.80575 0.78294 0.82878 1.20829 1.21302 1.19937 1.22933 1.07824 0.91129 0.99909 1.22790 1.04406 0.97905 0.99065 0.91000 0.93880 0.94471 0.93244 0.92179 0.92729 0.92780 0.93743 0.95013 0.85040 0.94546 0.93337 0.79291 0.92867 0.93475 0.93121 0.89717 0.91810 0.91718 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.85 37.16 0.37 -1.75 16 2 C -0.11 -1.84 5.33 -26.73 -0.14 -1.98 16 3 C 0.07 1.23 2.21 -67.71 -0.15 1.08 16 4 H 0.10 1.80 5.17 -51.93 -0.27 1.54 16 5 C -0.18 -3.18 8.52 37.16 0.32 -2.86 16 6 N -0.52 -10.18 2.73 -226.65 -0.62 -10.80 16 7 C 0.05 1.00 4.12 -3.82 -0.02 0.99 16 8 C 0.08 1.28 7.11 37.16 0.26 1.55 16 9 O -0.57 -8.51 10.83 -35.23 -0.38 -8.89 16 10 C 0.10 2.17 3.56 -3.82 -0.01 2.16 16 11 C 0.05 1.24 1.60 -155.67 -0.25 0.99 16 12 C -0.49 -13.17 8.84 -34.44 -0.30 -13.48 16 13 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 14 C 0.07 1.90 5.17 -17.82 -0.09 1.80 16 15 N -0.88 -23.42 11.15 55.43 0.62 -22.80 16 16 Si 0.89 20.81 29.55 -169.99 -5.02 15.79 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 C -0.18 -4.11 8.08 -26.74 -0.22 -4.33 16 21 C -0.20 -4.53 9.94 -26.74 -0.27 -4.80 16 22 H 0.07 1.24 6.93 -51.93 -0.36 0.88 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.04 6.15 -51.93 -0.32 0.72 16 27 H 0.05 1.03 6.71 -51.93 -0.35 0.68 16 28 H 0.05 1.02 6.45 -51.93 -0.33 0.69 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.03 0.68 6.16 -51.93 -0.32 0.36 16 31 H 0.13 3.02 4.63 -51.93 -0.24 2.78 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.79 7.13 -51.93 -0.37 0.42 16 34 H 0.36 3.66 9.12 45.56 0.42 4.07 16 35 H 0.05 1.35 6.01 -51.92 -0.31 1.04 16 36 H 0.05 1.04 5.88 -51.93 -0.31 0.74 16 37 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 38 H 0.08 1.82 4.35 -51.93 -0.23 1.60 16 39 H 0.06 1.54 8.14 -51.93 -0.42 1.11 16 40 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.07 1.42 7.50 -51.93 -0.39 1.03 16 LS Contribution 305.23 15.07 4.60 4.60 Total: -1.00 -26.98 305.23 -7.19 -34.18 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -5.88 Total: 8.54 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -0.50 Total: -20.62 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.00 Total: -33.59 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.38 Total: -8.89 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.98 -7.19 -34.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389362010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.378 kcal (2) G-P(sol) polarization free energy of solvation -26.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds