Wall clock time and date at job start Sun Mar 29 2020 23:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46772 * 2 1 4 4 H 1.08999 * 109.47029 * 56.54046 * 3 2 1 5 5 C 1.53005 * 109.47181 * 176.53515 * 3 2 1 6 6 N 1.46895 * 109.47323 * 296.54024 * 3 2 1 7 7 C 1.46904 * 110.99962 * 169.93955 * 6 3 2 8 8 C 1.52997 * 109.46998 * 282.89490 * 7 6 3 9 9 O 1.42903 * 109.46939 * 67.62382 * 8 7 6 10 10 C 1.46904 * 110.99972 * 293.89236 * 6 3 2 11 11 C 1.53002 * 109.47294 * 163.12908 * 10 6 3 12 12 C 1.50700 * 115.54954 * 148.41085 * 11 10 6 13 13 H 1.07998 * 119.99926 * 118.67556 * 12 11 10 14 14 C 1.37876 * 119.99705 * 298.67008 * 12 11 10 15 15 N 1.31516 * 120.00409 * 353.33684 * 14 12 11 16 16 Si 1.86798 * 119.99814 * 173.33832 * 14 12 11 17 17 H 1.48500 * 109.47335 * 89.99839 * 16 14 12 18 18 H 1.48499 * 109.47002 * 209.99992 * 16 14 12 19 19 H 1.48501 * 109.47014 * 329.99834 * 16 14 12 20 20 C 1.52992 * 117.49848 * 2.69588 * 11 10 6 21 21 C 1.52992 * 60.00136 * 252.51665 * 20 11 10 22 22 H 1.09001 * 109.47064 * 54.97019 * 1 2 3 23 23 H 1.09004 * 109.47471 * 294.97001 * 1 2 3 24 24 H 1.09001 * 109.47194 * 174.96541 * 1 2 3 25 25 H 1.09000 * 109.47215 * 119.99534 * 2 1 3 26 26 H 1.08996 * 109.47507 * 240.00263 * 2 1 3 27 27 H 1.08999 * 109.46705 * 60.00333 * 5 3 2 28 28 H 1.09000 * 109.46912 * 179.97438 * 5 3 2 29 29 H 1.08994 * 109.47329 * 300.00776 * 5 3 2 30 30 H 1.08993 * 109.47476 * 42.89962 * 7 6 3 31 31 H 1.09000 * 109.46928 * 162.89895 * 7 6 3 32 32 H 1.09006 * 109.47060 * 187.61639 * 8 7 6 33 33 H 1.09002 * 109.47340 * 307.62092 * 8 7 6 34 34 H 0.96700 * 113.99780 * 179.97438 * 9 8 7 35 35 H 1.09007 * 109.47065 * 283.12508 * 10 6 3 36 36 H 1.08996 * 109.47162 * 43.11869 * 10 6 3 37 37 H 0.96998 * 120.00275 * 185.00697 * 15 14 12 38 38 H 1.09005 * 117.49755 * 0.02562 * 20 11 10 39 39 H 1.08998 * 117.49871 * 145.02031 * 20 11 10 40 40 H 1.09000 * 117.49916 * 252.50836 * 21 20 11 41 41 H 1.09004 * 117.52161 * 107.48723 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6268 1.9739 0.8573 5 6 3.5675 1.4435 0.0872 6 7 1.6197 2.1105 -1.2390 7 6 1.8810 3.5546 -1.1732 8 6 0.8128 4.2272 -0.3087 9 8 0.9650 3.8075 1.0488 10 6 2.2742 1.5098 -2.4090 11 6 1.5253 1.9196 -3.6787 12 6 2.3724 2.0555 -4.9177 13 1 2.1797 1.4278 -5.7751 14 6 3.3934 2.9812 -4.9565 15 7 3.5459 3.8340 -3.9670 16 14 4.5601 3.0243 -6.4147 17 1 4.0230 3.9418 -7.4515 18 1 5.8920 3.5066 -5.9689 19 1 4.6929 1.6587 -6.9829 20 6 0.3418 2.8765 -3.5231 21 6 0.0958 1.4030 -3.8534 22 1 -0.3633 0.5899 -0.8415 23 1 -0.3634 0.4338 0.9316 24 1 -0.3634 -1.0237 -0.0902 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 3.9806 0.9121 -0.7702 28 1 3.9307 2.4712 0.0867 29 1 3.8793 0.9479 1.0065 30 1 2.8641 3.7264 -0.7353 31 1 1.8525 3.9751 -2.1784 32 1 0.9253 5.3098 -0.3689 33 1 -0.1766 3.9442 -0.6678 34 1 0.3197 4.1959 1.6553 35 1 3.3055 1.8581 -2.4671 36 1 2.2623 0.4240 -2.3144 37 1 4.2174 4.5315 -4.0269 38 1 0.0969 3.2144 -2.5161 39 1 0.1757 3.6048 -4.3168 40 1 -0.2321 1.1619 -4.8645 41 1 -0.3110 0.7709 -3.0640 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389362010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:10 Heat of formation + Delta-G solvation = -39.200312 kcal Electronic energy + Delta-G solvation = -19361.297947 eV Core-core repulsion = 16662.491269 eV Total energy + Delta-G solvation = -2698.806679 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.31292 -37.66077 -36.92651 -34.03097 -33.54371 -30.59523 -29.71930 -27.67416 -26.02479 -24.51327 -23.03476 -22.29103 -21.29953 -19.55730 -18.24882 -18.16304 -16.92815 -16.60199 -15.94431 -15.87738 -15.03218 -14.81828 -14.57735 -14.36166 -14.04805 -13.88762 -13.56786 -13.19836 -12.92381 -12.86239 -12.67073 -12.53460 -12.23789 -12.06071 -12.00367 -11.89866 -11.67385 -11.41806 -11.23499 -11.01754 -10.80649 -10.51230 -10.31909 -9.71733 -8.81543 -8.04007 -6.13224 1.39783 1.43150 1.51262 2.44030 3.13805 3.37554 3.60715 3.71830 4.08167 4.32272 4.38403 4.47080 4.51650 4.57149 4.65638 4.70393 4.72879 4.82354 4.89168 4.91890 5.07951 5.10602 5.14089 5.15585 5.19977 5.26000 5.32233 5.46032 5.47559 5.60599 5.68192 5.70821 5.77852 5.83840 5.97830 6.38452 6.60940 6.73044 6.93832 7.07683 7.50664 8.99578 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024545 B = 0.008539 C = 0.008184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.500848 B = 3278.202686 C = 3420.613942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.112 4.112 3 C 0.069 3.931 4 H 0.109 0.891 5 C -0.173 4.173 6 N -0.510 5.510 7 C 0.052 3.948 8 C 0.091 3.909 9 O -0.578 6.578 10 C 0.115 3.885 11 C 0.026 3.974 12 C -0.515 4.515 13 H 0.044 0.956 14 C 0.034 3.966 15 N -0.890 5.890 16 Si 0.943 3.057 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.171 4.171 21 C -0.188 4.188 22 H 0.050 0.950 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.010 0.990 31 H 0.101 0.899 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.387 0.613 35 H 0.017 0.983 36 H 0.047 0.953 37 H 0.258 0.742 38 H 0.099 0.901 39 H 0.044 0.956 40 H 0.063 0.937 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.934 -1.701 10.000 11.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.149 4.149 3 C -0.039 4.039 4 H 0.126 0.874 5 C -0.232 4.232 6 N -0.233 5.233 7 C -0.076 4.076 8 C 0.013 3.987 9 O -0.386 6.386 10 C -0.013 4.013 11 C 0.025 3.975 12 C -0.554 4.554 13 H 0.062 0.938 14 C -0.167 4.167 15 N -0.528 5.528 16 Si 0.769 3.231 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.208 4.208 21 C -0.225 4.225 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.029 0.971 31 H 0.119 0.881 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.236 0.764 35 H 0.036 0.964 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.789 -1.996 9.779 11.070 hybrid contribution 1.371 0.742 -0.904 1.802 sum -3.419 -1.254 8.875 9.593 Atomic orbital electron populations 1.21555 0.94820 1.00777 1.01853 1.21568 0.97233 0.95143 1.00985 1.22096 0.92023 0.95733 0.94069 0.87359 1.22339 0.99157 1.00438 1.01254 1.62263 1.57058 1.02267 1.01731 1.22293 0.95209 0.89364 1.00741 1.22181 0.98355 0.96527 0.81618 1.86444 1.60312 1.72961 1.18875 1.21289 0.95451 0.95789 0.88795 1.18972 0.85865 0.99268 0.93400 1.20822 1.15030 1.20276 0.99236 0.93756 1.25498 0.97989 0.95339 0.97919 1.69976 1.34569 1.16256 1.31952 0.85802 0.78796 0.78098 0.80370 1.20489 1.21140 1.19918 1.22816 1.06975 0.91060 0.99971 1.22781 1.02618 0.97550 0.99524 0.93105 0.92589 0.92941 0.90999 0.93709 0.94549 0.94599 0.91217 0.97137 0.88064 0.93171 0.92893 0.76359 0.96422 0.93431 0.93317 0.88324 0.93682 0.91890 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 9.85 71.98 0.71 -2.94 16 2 C -0.11 -3.33 5.33 30.59 0.16 -3.17 16 3 C 0.07 2.33 2.21 44.92 0.10 2.43 16 4 H 0.11 3.58 5.17 -2.39 -0.01 3.57 16 5 C -0.17 -6.03 8.52 71.98 0.61 -5.42 16 6 N -0.51 -19.69 2.73 -870.97 -2.38 -22.07 16 7 C 0.05 2.08 4.12 86.30 0.36 2.44 16 8 C 0.09 2.82 7.11 71.98 0.51 3.33 16 9 O -0.58 -15.64 10.83 -148.98 -1.61 -17.26 16 10 C 0.11 5.23 3.56 86.30 0.31 5.54 16 11 C 0.03 1.26 1.60 -52.93 -0.08 1.18 16 12 C -0.52 -28.25 8.84 25.60 0.23 -28.02 16 13 H 0.04 2.47 7.82 -2.91 -0.02 2.44 16 14 C 0.03 1.81 5.17 84.65 0.44 2.25 16 15 N -0.89 -48.47 11.15 21.45 0.24 -48.23 16 16 Si 0.94 43.32 29.55 68.60 2.03 45.35 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 20 C -0.17 -7.78 8.08 30.59 0.25 -7.53 16 21 C -0.19 -8.20 9.94 30.59 0.30 -7.90 16 22 H 0.05 1.62 6.93 -2.39 -0.02 1.60 16 23 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 25 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.04 1.48 6.15 -2.39 -0.01 1.46 16 27 H 0.04 1.37 6.71 -2.39 -0.02 1.36 16 28 H 0.03 1.36 6.45 -2.39 -0.02 1.34 16 29 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.01 0.46 6.16 -2.39 -0.01 0.44 16 31 H 0.10 4.73 4.63 -2.39 -0.01 4.72 16 32 H 0.05 1.42 8.14 -2.38 -0.02 1.41 16 33 H 0.05 1.61 7.13 -2.39 -0.02 1.59 16 34 H 0.39 6.43 9.12 -74.06 -0.68 5.76 16 35 H 0.02 0.92 6.01 -2.38 -0.01 0.91 16 36 H 0.05 2.13 5.88 -2.39 -0.01 2.11 16 37 H 0.26 13.59 8.32 -92.71 -0.77 12.82 16 38 H 0.10 4.18 4.35 -2.38 -0.01 4.17 16 39 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 41 H 0.09 3.42 7.50 -2.39 -0.02 3.40 16 Total: -1.00 -58.03 305.23 2.50 -55.53 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.34 Total: 24.49 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 3.89 Total: -37.81 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -2.14 Total: -70.30 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -1.61 Total: -17.26 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -58.03 2.50 -55.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389362010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.330 kcal (2) G-P(sol) polarization free energy of solvation -58.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds