Wall clock time and date at job start Sun Mar 29 2020 23:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47283 * 2 1 4 4 H 1.09002 * 109.47476 * 302.52804 * 3 2 1 5 5 C 1.53003 * 109.47291 * 182.52323 * 3 2 1 6 6 N 1.46900 * 109.46865 * 62.52597 * 3 2 1 7 7 C 1.46896 * 111.00116 * 67.37089 * 6 3 2 8 8 C 1.53009 * 109.47327 * 213.63874 * 7 6 3 9 9 O 1.42896 * 109.46489 * 66.25682 * 8 7 6 10 10 C 1.46904 * 111.00028 * 191.32336 * 6 3 2 11 11 C 1.53005 * 109.47265 * 163.43106 * 10 6 3 12 12 C 1.50700 * 115.55863 * 92.06441 * 11 10 6 13 13 H 1.08000 * 120.00214 * 219.70663 * 12 11 10 14 14 C 1.37881 * 120.00054 * 39.71243 * 12 11 10 15 15 N 1.31515 * 119.99910 * 14.98699 * 14 12 11 16 16 Si 1.86793 * 120.00025 * 194.98771 * 14 12 11 17 17 H 1.48503 * 109.47440 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47406 * 119.99771 * 16 14 12 19 19 H 1.48507 * 109.47040 * 239.99836 * 16 14 12 20 20 C 1.52999 * 117.49713 * 306.37915 * 11 10 6 21 21 C 1.52993 * 60.03031 * 252.49675 * 20 11 10 22 22 H 1.09003 * 109.47001 * 184.93069 * 1 2 3 23 23 H 1.09000 * 109.46999 * 304.92628 * 1 2 3 24 24 H 1.08995 * 109.47549 * 64.92905 * 1 2 3 25 25 H 1.09005 * 109.47093 * 240.00143 * 2 1 3 26 26 H 1.09005 * 109.47512 * 120.00582 * 2 1 3 27 27 H 1.08998 * 109.46754 * 60.00555 * 5 3 2 28 28 H 1.09006 * 109.47060 * 180.02562 * 5 3 2 29 29 H 1.08997 * 109.47264 * 299.99896 * 5 3 2 30 30 H 1.09000 * 109.47333 * 333.64235 * 7 6 3 31 31 H 1.09002 * 109.47654 * 93.64134 * 7 6 3 32 32 H 1.08992 * 109.46876 * 186.25482 * 8 7 6 33 33 H 1.08997 * 109.46733 * 306.25977 * 8 7 6 34 34 H 0.96705 * 113.99804 * 184.98287 * 9 8 7 35 35 H 1.08997 * 109.47175 * 43.43563 * 10 6 3 36 36 H 1.08999 * 109.47351 * 283.43203 * 10 6 3 37 37 H 0.96993 * 120.00255 * 174.99229 * 15 14 12 38 38 H 1.08994 * 117.50419 * 0.02562 * 20 11 10 39 39 H 1.09007 * 117.49619 * 144.99668 * 20 11 10 40 40 H 1.09002 * 117.49937 * 107.50620 * 21 20 11 41 41 H 1.09000 * 117.50029 * 252.52284 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6401 1.9693 -0.8665 5 6 3.5687 1.4429 -0.0635 6 7 1.6008 2.1171 1.2288 7 6 2.2598 1.5425 2.4092 8 6 1.3013 1.5872 3.6010 9 8 0.1954 0.7161 3.3555 10 6 1.8357 3.5649 1.1473 11 6 1.0151 4.2762 2.2251 12 6 1.7217 4.5022 3.5369 13 1 1.1877 4.3744 4.4669 14 6 3.0499 4.8721 3.5498 15 7 3.6206 5.3122 2.4497 16 14 4.0386 4.7483 5.1298 17 1 3.1710 4.2286 6.2173 18 1 5.1839 3.8253 4.9260 19 1 4.5467 6.0930 5.5024 20 6 -0.4874 3.9916 2.2718 21 6 0.0189 5.3438 1.7659 22 1 -0.3633 -1.0239 0.0883 23 1 -0.3633 0.5884 0.8426 24 1 -0.3634 0.4354 -0.9308 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.8945 0.9424 -0.9753 28 1 3.9321 2.4706 -0.0630 29 1 3.9685 0.9162 0.8030 30 1 2.5361 0.5083 2.2037 31 1 3.1556 2.1184 2.6417 32 1 1.8251 1.2647 4.5007 33 1 0.9382 2.6058 3.7371 34 1 -0.4913 0.7511 4.0355 35 1 1.5354 3.9269 0.1641 36 1 2.8949 3.7704 1.3023 37 1 4.5329 5.6407 2.4746 38 1 -0.8913 3.2973 1.5351 39 1 -0.9649 3.9675 3.2514 40 1 -0.0519 5.5395 0.6959 41 1 -0.1250 6.2092 2.4128 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389362011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:12 Heat of formation + Delta-G solvation = -21.455986 kcal Electronic energy + Delta-G solvation = -19545.704670 eV Core-core repulsion = 16847.667443 eV Total energy + Delta-G solvation = -2698.037227 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.57528 -35.93092 -35.50192 -32.26848 -31.97086 -29.27244 -27.94766 -25.89565 -24.25641 -22.79501 -21.68701 -20.94663 -18.97069 -18.48768 -16.75830 -15.88185 -15.50206 -14.75143 -14.30174 -14.02293 -13.41870 -13.24056 -12.98623 -12.71246 -12.58584 -12.29529 -12.11821 -11.61788 -11.40862 -11.17003 -11.01142 -10.85511 -10.62465 -10.54144 -10.40175 -10.21782 -10.13621 -9.97148 -9.80397 -9.25892 -8.97744 -8.73502 -8.49138 -8.06032 -7.11493 -6.09696 -4.09250 3.18547 3.29507 3.32183 4.30467 4.76078 5.01300 5.22564 5.31487 5.62265 5.68406 5.75241 5.87801 6.01416 6.07225 6.17865 6.24152 6.31411 6.32707 6.38654 6.48666 6.53294 6.59758 6.65122 6.67660 6.76553 6.88310 6.93523 7.02932 7.10442 7.12472 7.20484 7.29027 7.52003 7.57179 7.92124 8.20738 8.27189 8.45374 8.53161 8.84480 9.44814 10.90730 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022001 B = 0.010014 C = 0.009620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.356970 B = 2795.513459 C = 2909.920614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C 0.081 3.919 4 H 0.070 0.930 5 C -0.184 4.184 6 N -0.514 5.514 7 C 0.074 3.926 8 C 0.060 3.940 9 O -0.569 6.569 10 C 0.083 3.917 11 C 0.061 3.939 12 C -0.483 4.483 13 H 0.060 0.940 14 C 0.072 3.928 15 N -0.872 5.872 16 Si 0.877 3.123 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.284 1.284 20 C -0.185 4.185 21 C -0.207 4.207 22 H 0.034 0.966 23 H 0.086 0.914 24 H 0.037 0.963 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.017 0.983 33 H 0.108 0.892 34 H 0.359 0.641 35 H 0.034 0.966 36 H 0.087 0.913 37 H 0.261 0.739 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.258 -7.306 -2.056 7.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 C -0.028 4.028 4 H 0.088 0.912 5 C -0.243 4.243 6 N -0.237 5.237 7 C -0.054 4.054 8 C -0.017 4.017 9 O -0.372 6.372 10 C -0.044 4.044 11 C 0.060 3.940 12 C -0.520 4.520 13 H 0.078 0.922 14 C -0.131 4.131 15 N -0.510 5.510 16 Si 0.704 3.296 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.210 1.210 20 C -0.223 4.223 21 C -0.245 4.245 22 H 0.053 0.947 23 H 0.104 0.896 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.035 0.965 33 H 0.126 0.874 34 H 0.202 0.798 35 H 0.053 0.947 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.180 -7.507 -2.635 8.249 hybrid contribution 1.249 0.402 1.211 1.786 sum -0.931 -7.105 -1.424 7.306 Atomic orbital electron populations 1.21632 0.95365 1.00299 1.02477 1.21514 0.96939 0.95737 1.00364 1.21699 0.92063 0.94989 0.94082 0.91206 1.22517 0.98555 1.02219 1.01012 1.62106 1.57039 1.04417 1.00145 1.21908 0.94998 0.97646 0.90849 1.22903 0.87414 0.96762 0.94641 1.86463 1.33113 1.66357 1.51233 1.21925 1.02709 0.84063 0.95663 1.18867 0.85901 0.94544 0.94717 1.20524 0.94473 1.46224 0.90780 0.92154 1.24920 0.97702 0.94722 0.95783 1.69912 1.14288 1.39857 1.26897 0.86768 0.80562 0.78013 0.84239 1.19505 1.20779 1.20996 1.22655 1.01135 0.98428 1.00044 1.23015 1.10816 0.92798 0.97911 0.94660 0.89555 0.94419 0.93437 0.92193 0.93415 0.92155 0.92843 0.93046 0.92906 0.96524 0.87441 0.79767 0.94715 0.89504 0.92893 0.90619 0.91748 0.92220 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.84 37.16 0.37 -1.83 16 2 C -0.11 -1.68 5.33 -26.74 -0.14 -1.83 16 3 C 0.08 1.41 2.30 -67.71 -0.16 1.25 16 4 H 0.07 1.23 7.82 -51.93 -0.41 0.82 16 5 C -0.18 -3.07 8.66 37.16 0.32 -2.74 16 6 N -0.51 -10.13 3.30 -226.64 -0.75 -10.88 16 7 C 0.07 1.48 3.56 -3.82 -0.01 1.47 16 8 C 0.06 1.17 6.74 37.16 0.25 1.43 16 9 O -0.57 -10.12 13.03 -35.23 -0.46 -10.58 16 10 C 0.08 1.88 4.15 -3.82 -0.02 1.86 16 11 C 0.06 1.42 0.98 -155.62 -0.15 1.27 16 12 C -0.48 -12.11 6.23 -34.44 -0.21 -12.33 16 13 H 0.06 1.53 7.42 -52.49 -0.39 1.14 16 14 C 0.07 1.82 5.07 -17.82 -0.09 1.73 16 15 N -0.87 -23.10 11.11 55.43 0.62 -22.49 16 16 Si 0.88 19.92 29.57 -169.99 -5.03 14.89 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 C -0.19 -3.99 8.68 -26.74 -0.23 -4.22 16 21 C -0.21 -4.72 9.88 -26.70 -0.26 -4.99 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.09 1.56 6.93 -51.93 -0.36 1.20 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.99 6.30 -51.93 -0.33 0.66 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 1.11 7.13 -51.93 -0.37 0.74 16 29 H 0.05 0.89 6.62 -51.93 -0.34 0.55 16 30 H 0.05 0.97 5.24 -51.93 -0.27 0.70 16 31 H 0.05 1.18 7.52 -51.93 -0.39 0.79 16 32 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.11 2.32 2.82 -51.93 -0.15 2.18 16 34 H 0.36 4.98 9.12 45.56 0.42 5.40 16 35 H 0.03 0.79 7.51 -51.93 -0.39 0.40 16 36 H 0.09 2.17 4.30 -51.93 -0.22 1.95 16 37 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 38 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 39 H 0.06 1.36 8.14 -51.92 -0.42 0.94 16 40 H 0.06 1.31 8.03 -51.93 -0.42 0.90 16 41 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 309.98 15.07 4.67 4.67 Total: -1.00 -25.97 309.98 -7.43 -33.40 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.14 Total: 9.91 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -0.34 Total: -18.92 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: -0.13 Total: -33.37 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -0.46 Total: -10.58 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.89 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -25.97 -7.43 -33.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389362011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.943 kcal (2) G-P(sol) polarization free energy of solvation -25.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds