Wall clock time and date at job start Sun Mar 29 2020 23:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47283 * 2 1 4 4 H 1.09002 * 109.47476 * 302.52804 * 3 2 1 5 5 C 1.53003 * 109.47291 * 182.52323 * 3 2 1 6 6 N 1.46900 * 109.46865 * 62.52597 * 3 2 1 7 7 C 1.46896 * 111.00116 * 67.37089 * 6 3 2 8 8 C 1.53009 * 109.47327 * 213.63874 * 7 6 3 9 9 O 1.42896 * 109.46489 * 66.25682 * 8 7 6 10 10 C 1.46904 * 111.00028 * 191.32336 * 6 3 2 11 11 C 1.53005 * 109.47265 * 163.43106 * 10 6 3 12 12 C 1.50700 * 115.55863 * 92.06441 * 11 10 6 13 13 H 1.08000 * 120.00214 * 219.70663 * 12 11 10 14 14 C 1.37881 * 120.00054 * 39.71243 * 12 11 10 15 15 N 1.31515 * 119.99910 * 14.98699 * 14 12 11 16 16 Si 1.86793 * 120.00025 * 194.98771 * 14 12 11 17 17 H 1.48503 * 109.47440 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47406 * 119.99771 * 16 14 12 19 19 H 1.48507 * 109.47040 * 239.99836 * 16 14 12 20 20 C 1.52999 * 117.49713 * 306.37915 * 11 10 6 21 21 C 1.52993 * 60.03031 * 252.49675 * 20 11 10 22 22 H 1.09003 * 109.47001 * 184.93069 * 1 2 3 23 23 H 1.09000 * 109.46999 * 304.92628 * 1 2 3 24 24 H 1.08995 * 109.47549 * 64.92905 * 1 2 3 25 25 H 1.09005 * 109.47093 * 240.00143 * 2 1 3 26 26 H 1.09005 * 109.47512 * 120.00582 * 2 1 3 27 27 H 1.08998 * 109.46754 * 60.00555 * 5 3 2 28 28 H 1.09006 * 109.47060 * 180.02562 * 5 3 2 29 29 H 1.08997 * 109.47264 * 299.99896 * 5 3 2 30 30 H 1.09000 * 109.47333 * 333.64235 * 7 6 3 31 31 H 1.09002 * 109.47654 * 93.64134 * 7 6 3 32 32 H 1.08992 * 109.46876 * 186.25482 * 8 7 6 33 33 H 1.08997 * 109.46733 * 306.25977 * 8 7 6 34 34 H 0.96705 * 113.99804 * 184.98287 * 9 8 7 35 35 H 1.08997 * 109.47175 * 43.43563 * 10 6 3 36 36 H 1.08999 * 109.47351 * 283.43203 * 10 6 3 37 37 H 0.96993 * 120.00255 * 174.99229 * 15 14 12 38 38 H 1.08994 * 117.50419 * 0.02562 * 20 11 10 39 39 H 1.09007 * 117.49619 * 144.99668 * 20 11 10 40 40 H 1.09002 * 117.49937 * 107.50620 * 21 20 11 41 41 H 1.09000 * 117.50029 * 252.52284 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6401 1.9693 -0.8665 5 6 3.5687 1.4429 -0.0635 6 7 1.6008 2.1171 1.2288 7 6 2.2598 1.5425 2.4092 8 6 1.3013 1.5872 3.6010 9 8 0.1954 0.7161 3.3555 10 6 1.8357 3.5649 1.1473 11 6 1.0151 4.2762 2.2251 12 6 1.7217 4.5022 3.5369 13 1 1.1877 4.3744 4.4669 14 6 3.0499 4.8721 3.5498 15 7 3.6206 5.3122 2.4497 16 14 4.0386 4.7483 5.1298 17 1 3.1710 4.2286 6.2173 18 1 5.1839 3.8253 4.9260 19 1 4.5467 6.0930 5.5024 20 6 -0.4874 3.9916 2.2718 21 6 0.0189 5.3438 1.7659 22 1 -0.3633 -1.0239 0.0883 23 1 -0.3633 0.5884 0.8426 24 1 -0.3634 0.4354 -0.9308 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.8945 0.9424 -0.9753 28 1 3.9321 2.4706 -0.0630 29 1 3.9685 0.9162 0.8030 30 1 2.5361 0.5083 2.2037 31 1 3.1556 2.1184 2.6417 32 1 1.8251 1.2647 4.5007 33 1 0.9382 2.6058 3.7371 34 1 -0.4913 0.7511 4.0355 35 1 1.5354 3.9269 0.1641 36 1 2.8949 3.7704 1.3023 37 1 4.5329 5.6407 2.4746 38 1 -0.8913 3.2973 1.5351 39 1 -0.9649 3.9675 3.2514 40 1 -0.0519 5.5395 0.6959 41 1 -0.1250 6.2092 2.4128 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389362011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:12 Heat of formation + Delta-G solvation = -37.194279 kcal Electronic energy + Delta-G solvation = -19546.387134 eV Core-core repulsion = 16847.667443 eV Total energy + Delta-G solvation = -2698.719691 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.17376 -37.61878 -36.95222 -34.16951 -33.44931 -30.67140 -29.51961 -27.80400 -25.90391 -24.19559 -23.24207 -22.67008 -20.78044 -20.01578 -18.38407 -17.60457 -16.96134 -16.64821 -15.90535 -15.71579 -14.93409 -14.65908 -14.43083 -14.39118 -14.09515 -13.86613 -13.62146 -13.38989 -12.97714 -12.84495 -12.68209 -12.42021 -12.30196 -12.10624 -11.92727 -11.91516 -11.59712 -11.47843 -11.31375 -10.97500 -10.79937 -10.48303 -10.24848 -9.85048 -8.75872 -8.03219 -6.07275 1.36501 1.43705 1.50732 2.41683 3.04326 3.23445 3.79608 3.86302 3.98552 4.26469 4.39038 4.42585 4.57412 4.63151 4.67077 4.73535 4.79481 4.85735 4.89833 4.91389 5.00686 5.08491 5.13169 5.17580 5.23809 5.27112 5.32945 5.35478 5.45605 5.54482 5.61343 5.65292 5.71214 5.84495 6.06618 6.48521 6.57604 6.67731 6.92254 7.23877 7.48067 8.95608 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022001 B = 0.010014 C = 0.009620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.356970 B = 2795.513459 C = 2909.920614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.100 4.100 3 C 0.075 3.925 4 H 0.068 0.932 5 C -0.176 4.176 6 N -0.508 5.508 7 C 0.079 3.921 8 C 0.067 3.933 9 O -0.571 6.571 10 C 0.096 3.904 11 C 0.042 3.958 12 C -0.483 4.483 13 H 0.054 0.946 14 C 0.035 3.965 15 N -0.898 5.898 16 Si 0.926 3.074 17 H -0.264 1.264 18 H -0.283 1.283 19 H -0.287 1.287 20 C -0.158 4.158 21 C -0.215 4.215 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.043 0.957 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.025 0.975 32 H 0.023 0.977 33 H 0.088 0.912 34 H 0.377 0.623 35 H 0.025 0.975 36 H 0.062 0.938 37 H 0.259 0.741 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 -8.868 -2.124 9.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.138 4.138 3 C -0.034 4.034 4 H 0.086 0.914 5 C -0.235 4.235 6 N -0.232 5.232 7 C -0.049 4.049 8 C -0.011 4.011 9 O -0.376 6.376 10 C -0.031 4.031 11 C 0.041 3.959 12 C -0.520 4.520 13 H 0.072 0.928 14 C -0.165 4.165 15 N -0.536 5.536 16 Si 0.752 3.248 17 H -0.188 1.188 18 H -0.209 1.209 19 H -0.213 1.213 20 C -0.195 4.195 21 C -0.253 4.253 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.062 0.938 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.106 0.894 34 H 0.224 0.776 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.746 -9.079 -2.689 9.858 hybrid contribution 1.362 0.868 1.206 2.016 sum -1.384 -8.211 -1.482 8.457 Atomic orbital electron populations 1.21558 0.95194 1.00827 1.01702 1.21463 0.96971 0.94130 1.01214 1.21845 0.92579 0.96073 0.92858 0.91370 1.22418 0.97960 1.00885 1.02215 1.62112 1.57005 1.02903 1.01162 1.21816 0.94155 0.97708 0.91205 1.22653 0.87882 0.95995 0.94583 1.86416 1.33238 1.65640 1.52318 1.21637 1.00913 0.85893 0.94696 1.18958 0.86926 0.95408 0.94602 1.20639 0.94680 1.45560 0.91164 0.92761 1.25424 0.98487 0.94733 0.97884 1.70020 1.14346 1.40928 1.28333 0.85995 0.79391 0.77605 0.81775 1.18782 1.20856 1.21294 1.22543 0.99544 0.97234 1.00198 1.23021 1.11152 0.93044 0.98107 0.93148 0.92038 0.93779 0.90956 0.92853 0.90754 0.94669 0.93170 0.91787 0.95703 0.95911 0.89407 0.77609 0.95656 0.92006 0.93145 0.90081 0.91186 0.91738 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.84 71.98 0.71 -3.16 16 2 C -0.10 -2.85 5.33 30.59 0.16 -2.69 16 3 C 0.08 2.51 2.30 44.91 0.10 2.61 16 4 H 0.07 2.30 7.82 -2.39 -0.02 2.29 16 5 C -0.18 -5.67 8.66 71.98 0.62 -5.05 16 6 N -0.51 -19.72 3.30 -870.96 -2.87 -22.59 16 7 C 0.08 3.12 3.56 86.31 0.31 3.43 16 8 C 0.07 2.53 6.74 71.99 0.49 3.01 16 9 O -0.57 -19.10 13.03 -148.98 -1.94 -21.04 16 10 C 0.10 4.37 4.15 86.30 0.36 4.73 16 11 C 0.04 1.97 0.98 -52.90 -0.05 1.91 16 12 C -0.48 -24.27 6.23 25.60 0.16 -24.11 16 13 H 0.05 2.74 7.42 -2.91 -0.02 2.72 16 14 C 0.04 1.80 5.07 84.66 0.43 2.22 16 15 N -0.90 -48.39 11.11 21.45 0.24 -48.15 16 16 Si 0.93 41.00 29.57 68.60 2.03 43.03 16 17 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 19 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 20 C -0.16 -6.63 8.68 30.59 0.27 -6.36 16 21 C -0.21 -9.75 9.88 30.61 0.30 -9.45 16 22 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.06 2.08 6.93 -2.39 -0.02 2.06 16 24 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.05 1.61 6.30 -2.38 -0.02 1.59 16 27 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.03 1.29 7.13 -2.38 -0.02 1.28 16 29 H 0.05 1.63 6.62 -2.39 -0.02 1.61 16 30 H 0.06 2.33 5.24 -2.39 -0.01 2.32 16 31 H 0.02 1.12 7.52 -2.39 -0.02 1.10 16 32 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 3.72 2.82 -2.39 -0.01 3.71 16 34 H 0.38 9.56 9.12 -74.05 -0.68 8.88 16 35 H 0.02 1.16 7.51 -2.39 -0.02 1.14 16 36 H 0.06 3.18 4.30 -2.39 -0.01 3.16 16 37 H 0.26 13.48 8.32 -92.71 -0.77 12.71 16 38 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 39 H 0.07 2.85 8.14 -2.38 -0.02 2.83 16 40 H 0.06 2.82 8.03 -2.39 -0.02 2.80 16 41 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -54.32 309.98 1.64 -52.68 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.33 Total: 28.96 kcal Atomic # 6 Polarization: -36.75 SS G_CDS: 3.85 Total: -32.90 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: -2.64 Total: -70.74 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -1.94 Total: -21.04 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -54.32 1.64 -52.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389362011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.489 kcal (2) G-P(sol) polarization free energy of solvation -54.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds