Wall clock time and date at job start Sun Mar 29 2020 22:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47122 * 2 1 4 4 C 1.52994 * 109.47167 * 180.02562 * 3 2 1 5 5 N 1.46894 * 109.47134 * 179.97438 * 4 3 2 6 6 C 1.46900 * 111.00229 * 189.99843 * 5 4 3 7 7 C 1.53007 * 109.47043 * 76.34167 * 6 5 4 8 8 O 1.42894 * 109.47150 * 65.09115 * 7 6 5 9 9 C 1.42902 * 113.99782 * 184.81139 * 8 7 6 10 10 C 1.50708 * 109.46903 * 175.19488 * 9 8 7 11 11 H 1.08000 * 119.99798 * 4.86971 * 10 9 8 12 12 C 1.37876 * 119.99804 * 184.87338 * 10 9 8 13 13 N 1.31519 * 119.99858 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00056 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47032 * 59.99788 * 14 12 10 16 16 H 1.48498 * 109.47098 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47061 * 300.00030 * 14 12 10 18 18 C 1.46901 * 111.00029 * 66.04878 * 5 4 3 19 19 C 1.53003 * 117.49912 * 256.48398 * 18 5 4 20 20 C 1.52996 * 60.00064 * 252.50682 * 19 18 5 21 21 H 1.08993 * 109.46976 * 299.99681 * 1 2 3 22 22 H 1.09000 * 109.47113 * 60.00143 * 1 2 3 23 23 H 1.09002 * 109.46538 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46899 * 240.00328 * 2 1 3 25 25 H 1.08996 * 109.47296 * 120.00326 * 2 1 3 26 26 H 1.08994 * 109.47172 * 59.99799 * 3 2 1 27 27 H 1.09008 * 109.46669 * 300.00455 * 3 2 1 28 28 H 1.09003 * 109.46997 * 60.00242 * 4 3 2 29 29 H 1.08996 * 109.47154 * 300.00267 * 4 3 2 30 30 H 1.09001 * 109.47458 * 316.34028 * 6 5 4 31 31 H 1.09004 * 109.47153 * 196.33784 * 6 5 4 32 32 H 1.08996 * 109.47004 * 185.09560 * 7 6 5 33 33 H 1.08998 * 109.46421 * 305.09189 * 7 6 5 34 34 H 1.09006 * 109.47188 * 295.19209 * 9 8 7 35 35 H 1.08992 * 109.47395 * 55.19566 * 9 8 7 36 36 H 0.97000 * 119.99798 * 180.02562 * 13 12 10 37 37 H 1.08997 * 115.55035 * 42.18356 * 18 5 4 38 38 H 1.09001 * 117.49522 * 359.97438 * 19 18 5 39 39 H 1.08995 * 117.50343 * 145.01532 * 19 18 5 40 40 H 1.09003 * 117.49717 * 252.51236 * 20 19 18 41 41 H 1.08999 * 117.52013 * 107.47964 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8275 -0.0013 6 6 5.5084 2.8736 -0.2400 7 6 5.7887 2.6304 -1.7244 8 8 5.2462 3.7053 -2.4939 9 6 5.3582 3.5230 -3.9068 10 6 4.6539 4.6508 -4.6162 11 1 4.2375 5.4696 -4.0482 12 6 4.5412 4.6373 -5.9903 13 7 5.0487 3.6404 -6.6819 14 14 3.6676 6.0348 -6.8696 15 1 4.3636 7.3141 -6.5793 16 1 3.6825 5.7848 -8.3333 17 1 2.2628 6.1168 -6.3952 18 6 3.7108 3.5098 1.2520 19 6 2.5479 4.5035 1.2154 20 6 3.9855 5.0124 1.3386 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.6767 1.9563 0.8899 27 1 1.6766 1.9563 -0.8900 28 1 3.9330 0.9289 -0.8909 29 1 3.9337 0.9286 0.8891 30 1 5.9993 2.1023 0.3536 31 1 5.8929 3.8524 0.0467 32 1 6.8651 2.5745 -1.8865 33 1 5.3257 1.6930 -2.0326 34 1 6.4108 3.5167 -4.1900 35 1 4.9005 2.5747 -4.1882 36 1 4.9697 3.6310 -7.6486 37 1 3.8416 2.9211 2.1600 38 1 2.0421 4.6512 0.2612 39 1 1.9135 4.5686 2.0992 40 1 4.2968 5.4123 2.3037 41 1 4.4256 5.4947 0.4658 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395438007.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:28 Heat of formation + Delta-G solvation = -36.411203 kcal Electronic energy + Delta-G solvation = -17754.099396 eV Core-core repulsion = 15055.413662 eV Total energy + Delta-G solvation = -2698.685734 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.69214 -36.43849 -35.33255 -33.63732 -32.54422 -29.77171 -27.66534 -26.37871 -23.36806 -22.39082 -22.15224 -21.49799 -20.94701 -19.81161 -16.32354 -16.23951 -15.79546 -15.43836 -15.01633 -14.51159 -14.30164 -13.96452 -13.63999 -13.13872 -12.94440 -12.77168 -12.31399 -12.16393 -11.64605 -11.42327 -11.26943 -11.16095 -10.97969 -10.80982 -10.77067 -10.70442 -10.52087 -10.36612 -10.10722 -10.02542 -9.75238 -9.02456 -8.70559 -8.05277 -7.99365 -6.03798 -4.04477 3.36787 3.38930 3.43375 3.89195 4.00402 4.41336 4.86885 5.00601 5.02365 5.09699 5.16478 5.19958 5.30192 5.32671 5.42108 5.53778 5.68970 5.70469 5.79062 5.81288 5.83880 5.88604 5.93056 5.99126 6.09524 6.16368 6.18501 6.21477 6.39111 6.41507 6.44697 6.52244 7.19462 7.35042 7.42896 7.52808 7.87785 8.25255 8.71371 9.10334 9.60065 11.07898 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017946 B = 0.005662 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.854137 B = 4943.891145 C = 5400.415851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.114 4.114 4 C 0.060 3.940 5 N -0.496 5.496 6 C 0.062 3.938 7 C 0.069 3.931 8 O -0.380 6.380 9 C 0.195 3.805 10 C -0.509 4.509 11 H 0.065 0.935 12 C 0.055 3.945 13 N -0.901 5.901 14 Si 0.906 3.094 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.007 3.993 19 C -0.163 4.163 20 C -0.173 4.173 21 H 0.051 0.949 22 H 0.056 0.944 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.025 0.975 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.035 0.965 34 H -0.002 1.002 35 H 0.006 0.994 36 H 0.263 0.737 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.194 -5.004 16.402 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.068 4.068 5 N -0.220 5.220 6 C -0.065 4.065 7 C -0.009 4.009 8 O -0.300 6.300 9 C 0.121 3.879 10 C -0.547 4.547 11 H 0.083 0.917 12 C -0.145 4.145 13 N -0.541 5.541 14 Si 0.734 3.266 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.102 4.102 19 C -0.200 4.200 20 C -0.210 4.210 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.016 0.984 35 H 0.024 0.976 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.121 0.879 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.474 -4.657 15.898 17.160 hybrid contribution 0.166 -0.110 -0.091 0.219 sum -4.309 -4.767 15.807 17.063 Atomic orbital electron populations 1.21748 0.95951 1.01190 1.01887 1.21498 0.95844 0.97200 1.01629 1.21566 0.94545 0.96041 1.02986 1.22146 0.95837 0.88600 1.00192 1.61657 1.13838 1.15300 1.31234 1.22127 0.87285 1.01483 0.95637 1.22236 0.96104 0.91758 0.90837 1.87921 1.81161 1.40966 1.19905 1.20154 0.95376 0.97117 0.75296 1.21025 1.35961 1.06612 0.91107 0.91671 1.24939 0.95899 0.96534 0.97158 1.69960 1.45825 1.31249 1.07025 0.86423 0.80145 0.82021 0.78034 1.20069 1.21234 1.20046 1.22333 1.04897 0.91234 0.91773 1.23027 0.91159 1.02795 1.03046 1.23046 0.99681 0.95362 1.02960 0.92995 0.92494 0.93111 0.91969 0.92625 0.92036 0.90795 0.90635 0.95648 0.94366 0.90145 0.94580 0.94650 0.98435 0.97625 0.92732 0.90364 0.87898 0.89469 0.89290 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.12 -1.35 5.93 -26.73 -0.16 -1.51 16 3 C -0.11 -1.46 5.14 -26.73 -0.14 -1.60 16 4 C 0.06 0.83 4.78 -3.83 -0.02 0.81 16 5 N -0.50 -7.80 4.51 -226.65 -1.02 -8.82 16 6 C 0.06 0.98 5.34 -3.82 -0.02 0.96 16 7 C 0.07 1.33 6.14 37.16 0.23 1.56 16 8 O -0.38 -9.49 10.27 -35.23 -0.36 -9.86 16 9 C 0.20 5.52 5.69 36.01 0.21 5.72 16 10 C -0.51 -15.37 9.43 -34.44 -0.32 -15.70 16 11 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 14 Si 0.91 22.33 29.54 -169.99 -5.02 17.31 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 18 C 0.01 0.09 4.19 -67.71 -0.28 -0.20 16 19 C -0.16 -2.07 9.81 -26.73 -0.26 -2.33 16 20 C -0.17 -2.23 9.58 -26.73 -0.26 -2.49 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.75 6.90 -51.93 -0.36 0.40 16 27 H 0.07 1.12 8.14 -51.92 -0.42 0.69 16 28 H 0.08 1.13 6.60 -51.93 -0.34 0.79 16 29 H 0.03 0.32 8.10 -51.93 -0.42 -0.10 16 30 H 0.04 0.52 7.99 -51.93 -0.41 0.10 16 31 H 0.08 1.28 6.95 -51.93 -0.36 0.92 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.04 0.68 6.67 -51.93 -0.35 0.33 16 34 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 35 H 0.01 0.17 8.12 -51.93 -0.42 -0.25 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 38 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.11 1.60 7.86 -51.93 -0.41 1.20 16 LS Contribution 333.33 15.07 5.02 5.02 Total: -1.00 -31.49 333.33 -9.09 -40.58 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -7.69 Total: -3.11 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -0.76 Total: -14.36 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.29 Total: -35.59 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.36 Total: -9.86 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.49 -9.09 -40.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395438007.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.174 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds